RNA–Protein interactions for RNA: ENST00000555565.5

TDP1-212, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 5

Gene TDP1, Length 524 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-212ENST00000555565 NISCHQ9Y2I1 1504 aa27.51■■■□□ 2
TDP1-212ENST00000555565 ABCC9O60706 1549 aa25.32■■□□□ 1.64
TDP1-212ENST00000555565 CCDC180Q9P1Z9 1646 aa24.79■■□□□ 1.56
TDP1-212ENST00000555565 DNAJC5BQ9UF47 199 aa24.34■■□□□ 1.49
TDP1-212ENST00000555565 RB1CC1Q8TDY2 1594 aa23.85■■□□□ 1.41
TDP1-212ENST00000555565 NACADO15069 1562 aa23.61■■□□□ 1.37
TDP1-212ENST00000555565 PABPN1Q86U42 306 aaKnown RBP eCLIP23.55■■□□□ 1.36
TDP1-212ENST00000555565 DCAF8L2P0C7V8 631 aa23.38■■□□□ 1.33
TDP1-212ENST00000555565 UNC13AQ9UPW8 1703 aa23.31■■□□□ 1.32
TDP1-212ENST00000555565 BICRAQ9NZM4 1560 aa23.27■■□□□ 1.32
TDP1-212ENST00000555565 MYO15BQ96JP2 1530 aa23.17■■□□□ 1.3
TDP1-212ENST00000555565 CECR2Q9BXF3 1484 aa22.87■■□□□ 1.25
TDP1-212ENST00000555565 CC2D2AQ9P2K1 1620 aa22.85■■□□□ 1.25
TDP1-212ENST00000555565 SHROOM4Q9ULL8 1493 aa22.83■■□□□ 1.25
TDP1-212ENST00000555565 DCAF1Q9Y4B6 1507 aa22.69■■□□□ 1.22
TDP1-212ENST00000555565 EIF4G1Q04637 1599 aaKnown RBP22.68■■□□□ 1.22
TDP1-212ENST00000555565 ZCCHC6Q5VYS8 1495 aaKnown RBP22.68■■□□□ 1.22
TDP1-212ENST00000555565 DNAJC5Q9H3Z4 198 aa22.63■■□□□ 1.21
TDP1-212ENST00000555565 SCRIBQ14160 1630 aa22.57■■□□□ 1.2
TDP1-212ENST00000555565 CUX2O14529 1486 aa22■■□□□ 1.11
TDP1-212ENST00000555565 NCAPD3P42695 1498 aa21.87■■□□□ 1.09
TDP1-212ENST00000555565 ERCC6Q03468 1493 aa21.83■■□□□ 1.08
TDP1-212ENST00000555565 ATAD2BQ9ULI0 1458 aa21.71■■□□□ 1.07
TDP1-212ENST00000555565 NESP48681 1621 aa21.66■■□□□ 1.06
TDP1-212ENST00000555565 HMGXB3Q12766 1538 aa21.59■■□□□ 1.05
TDP1-212ENST00000555565 SMARCA2P51531 1590 aa21.55■■□□□ 1.04
TDP1-212ENST00000555565 SMARCA4P51532 1647 aa21.51■■□□□ 1.03
TDP1-212ENST00000555565 THOC2Q8NI27 1593 aaKnown RBP21.48■■□□□ 1.03
TDP1-212ENST00000555565 BAZ1BQ9UIG0 1483 aaKnown RBP21.4■■□□□ 1.02
TDP1-212ENST00000555565 LAMC3Q9Y6N6 1575 aa21.36■■□□□ 1.01
TDP1-212ENST00000555565 PEG3Q9GZU2 1588 aa21.36■■□□□ 1.01
TDP1-212ENST00000555565 TRIM41Q8WV44 630 aa21.34■■□□□ 1.01
TDP1-212ENST00000555565 BAZ1AQ9NRL2 1556 aaPredicted RBP21.33■■□□□ 1.01
TDP1-212ENST00000555565 KIF21AQ7Z4S6 1674 aa21.28■■□□□ 1
TDP1-212ENST00000555565 PDS5BQ9NTI5 1447 aa21.27■■□□□ 1
TDP1-212ENST00000555565 MROH2BQ7Z745 1585 aa21.21■□□□□ 0.99
TDP1-212ENST00000555565 CADPSQ9ULU8 1353 aa21.16■□□□□ 0.98
TDP1-212ENST00000555565 MRC2Q9UBG0 1479 aa21.11■□□□□ 0.97
TDP1-212ENST00000555565 WDR62O43379 1518 aa21.09■□□□□ 0.97
TDP1-212ENST00000555565 OSCARQ8IYS5 282 aa20.96■□□□□ 0.95
TDP1-212ENST00000555565 CEP164Q9UPV0 1460 aa20.91■□□□□ 0.94
TDP1-212ENST00000555565 WIZO95785 1651 aa20.89■□□□□ 0.93
TDP1-212ENST00000555565 FANCD2Q9BXW9 1451 aa20.88■□□□□ 0.93
TDP1-212ENST00000555565 CFTRP13569 1480 aa20.82■□□□□ 0.92
TDP1-212ENST00000555565 URB2Q14146 1524 aaKnown RBP20.78■□□□□ 0.92
TDP1-212ENST00000555565 RIMBP3CA6NJZ7 1639 aa20.7■□□□□ 0.9
TDP1-212ENST00000555565 RIMBP3BA6NNM3 1639 aa20.7■□□□□ 0.9
TDP1-212ENST00000555565 RIMBP3Q9UFD9 1639 aa20.7■□□□□ 0.9
TDP1-212ENST00000555565 RSF1Q96T23 1441 aaPredicted RBP20.61■□□□□ 0.89
TDP1-212ENST00000555565 ZNF608Q9ULD9 1512 aaPredicted RBP20.61■□□□□ 0.89
TDP1-212ENST00000555565 ARHGEF11O15085 1522 aa20.6■□□□□ 0.89
TDP1-212ENST00000555565 TOP2AP11388 1531 aaKnown RBP20.57■□□□□ 0.88
TDP1-212ENST00000555565 IFT140Q96RY7 1462 aa20.54■□□□□ 0.88
TDP1-212ENST00000555565 CYB5RLQ6IPT4 315 aa20.51■□□□□ 0.87
TDP1-212ENST00000555565 TOPBP1Q92547 1522 aa20.45■□□□□ 0.86
TDP1-212ENST00000555565 PRDM2Q13029 1718 aa20.42■□□□□ 0.86
TDP1-212ENST00000555565 CCDC88BA6NC98 1476 aa20.41■□□□□ 0.86
TDP1-212ENST00000555565 EIF4G3O43432 1585 aaKnown RBP20.39■□□□□ 0.85
TDP1-212ENST00000555565 ARAP1Q96P48 1450 aa20.39■□□□□ 0.85
TDP1-212ENST00000555565 TRHP20396 242 aaPredicted RBP20.36■□□□□ 0.85
TDP1-212ENST00000555565 AQRO60306 1485 aaKnown RBP eCLIP20.36■□□□□ 0.852e-7■■■■□ 20.2
TDP1-212ENST00000555565 ABCC8Q09428 1581 aa20.33■□□□□ 0.84
TDP1-212ENST00000555565 TARBP1Q13395 1621 aaKnown RBP20.31■□□□□ 0.84
TDP1-212ENST00000555565 CHD1O14646 1710 aa20.3■□□□□ 0.84
TDP1-212ENST00000555565 DNMBPQ6XZF7 1577 aa20.29■□□□□ 0.84
TDP1-212ENST00000555565 FBLN2P98095 1184 aa20.25■□□□□ 0.83
TDP1-212ENST00000555565 POLA1P09884 1462 aaPredicted RBP20.22■□□□□ 0.83
TDP1-212ENST00000555565 RAD54L2Q9Y4B4 1467 aa20.17■□□□□ 0.82
TDP1-212ENST00000555565 TDRD9Q8NDG6 1382 aaKnown RBP20.16■□□□□ 0.82
TDP1-212ENST00000555565 CLASP1Q7Z460 1538 aa20.13■□□□□ 0.81
TDP1-212ENST00000555565 SOGA1O94964 1423 aa20.11■□□□□ 0.81
TDP1-212ENST00000555565 SNAPC4Q5SXM2 1469 aa20.08■□□□□ 0.81
TDP1-212ENST00000555565 AEBP2Q6ZN18 517 aaPredicted RBP20.08■□□□□ 0.81
TDP1-212ENST00000555565 CHMP7Q8WUX9 453 aaPredicted RBP20.04■□□□□ 0.8
TDP1-212ENST00000555565 SYNJ1O43426 1573 aa20■□□□□ 0.79
TDP1-212ENST00000555565 FGD5Q6ZNL6 1462 aa20■□□□□ 0.79
TDP1-212ENST00000555565 MAGI1Q96QZ7 1491 aaPredicted RBP20■□□□□ 0.79
TDP1-212ENST00000555565 WDR97A6NE52 1622 aa20■□□□□ 0.79
TDP1-212ENST00000555565 GRIN2BQ13224 1484 aa19.97■□□□□ 0.79
TDP1-212ENST00000555565 SYNJ2O15056 1496 aa19.96■□□□□ 0.79
TDP1-212ENST00000555565 GAPVD1Q14C86 1478 aa19.94■□□□□ 0.78
TDP1-212ENST00000555565 CUX1P39880 1505 aa19.94■□□□□ 0.78
TDP1-212ENST00000555565 ERCC6L2Q5T890 1561 aa19.82■□□□□ 0.76
TDP1-212ENST00000555565 PBRM1Q86U86 1689 aa19.78■□□□□ 0.76
TDP1-212ENST00000555565 ABCA10Q8WWZ4 1543 aa19.76■□□□□ 0.75
TDP1-212ENST00000555565 ABCA5Q8WWZ7 1642 aa19.76■□□□□ 0.75
TDP1-212ENST00000555565 GRIN2AQ12879 1464 aa19.72■□□□□ 0.75
TDP1-212ENST00000555565 NUP160Q12769 1436 aa19.7■□□□□ 0.74
TDP1-212ENST00000555565 CEP170Q5SW79 1584 aa19.7■□□□□ 0.74
TDP1-212ENST00000555565 SHROOM2Q13796 1616 aa19.65■□□□□ 0.74
TDP1-212ENST00000555565 ADAMTS12P58397 1594 aa19.61■□□□□ 0.73
TDP1-212ENST00000555565 KIF13AQ9H1H9 1805 aa19.61■□□□□ 0.73
TDP1-212ENST00000555565 FHAD1B1AJZ9 1412 aa19.57■□□□□ 0.72
TDP1-212ENST00000555565 WRNQ14191 1432 aaPredicted RBP eCLIP19.57■□□□□ 0.72
TDP1-212ENST00000555565 SUPT5HO00267 1087 aaKnown RBP19.54■□□□□ 0.72
TDP1-212ENST00000555565 PRG4Q92954 1404 aaPredicted RBP19.53■□□□□ 0.72
TDP1-212ENST00000555565 JPH4Q96JJ6 628 aa19.52■□□□□ 0.72
TDP1-212ENST00000555565 ABCC10Q5T3U5 1492 aa19.5■□□□□ 0.71
TDP1-212ENST00000555565 FAM69CQ0P6D2 419 aa19.5■□□□□ 0.71
TDP1-212ENST00000555565 ERICH3Q5RHP9 1530 aa19.48■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms