RNA–Protein interactions for RNA: ENST00000560055.5

RPL28-209, Transcript of ribosomal protein L28, humanhuman

TSL 3 BASIC

Gene RPL28, Length 670 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPL28-209ENST00000560055 NISCHQ9Y2I1 1504 aa40.76■■■■■ 4.12
RPL28-209ENST00000560055 CCDC180Q9P1Z9 1646 aa36.14■■■■□ 3.38
RPL28-209ENST00000560055 ABCC9O60706 1549 aa35.42■■■■□ 3.26
RPL28-209ENST00000560055 ZCCHC6Q5VYS8 1495 aaKnown RBP34.01■■■■□ 3.03
RPL28-209ENST00000560055 NACADO15069 1562 aa33.95■■■■□ 3.03
RPL28-209ENST00000560055 RB1CC1Q8TDY2 1594 aa33.92■■■■□ 3.02
RPL28-209ENST00000560055 MYO15BQ96JP2 1530 aa33.86■■■■□ 3.01
RPL28-209ENST00000560055 DCAF8L2P0C7V8 631 aa33.86■■■■□ 3.01
RPL28-209ENST00000560055 DCAF1Q9Y4B6 1507 aa33.77■■■■□ 3
RPL28-209ENST00000560055 UNC13AQ9UPW8 1703 aa33.14■■■□□ 2.9
RPL28-209ENST00000560055 DNAJC5BQ9UF47 199 aa33.08■■■□□ 2.89
RPL28-209ENST00000560055 PABPN1Q86U42 306 aaKnown RBP eCLIP33.04■■■□□ 2.88
RPL28-209ENST00000560055 SCRIBQ14160 1630 aa32.96■■■□□ 2.87
RPL28-209ENST00000560055 BICRAQ9NZM4 1560 aa32.95■■■□□ 2.86
RPL28-209ENST00000560055 SHROOM4Q9ULL8 1493 aa32.62■■■□□ 2.81
RPL28-209ENST00000560055 EIF4G1Q04637 1599 aaKnown RBP32.04■■■□□ 2.72
RPL28-209ENST00000560055 CC2D2AQ9P2K1 1620 aa31.99■■■□□ 2.71
RPL28-209ENST00000560055 CECR2Q9BXF3 1484 aa31.84■■■□□ 2.69
RPL28-209ENST00000560055 SMARCA4P51532 1647 aa31.57■■■□□ 2.64
RPL28-209ENST00000560055 BAZ1AQ9NRL2 1556 aaPredicted RBP31.56■■■□□ 2.64
RPL28-209ENST00000560055 MROH2BQ7Z745 1585 aa31.41■■■□□ 2.62
RPL28-209ENST00000560055 ATAD2BQ9ULI0 1458 aa31.39■■■□□ 2.62
RPL28-209ENST00000560055 NCAPD3P42695 1498 aa31.36■■■□□ 2.61
RPL28-209ENST00000560055 SMARCA2P51531 1590 aa31.33■■■□□ 2.61
RPL28-209ENST00000560055 PEG3Q9GZU2 1588 aa31.31■■■□□ 2.6
RPL28-209ENST00000560055 HMGXB3Q12766 1538 aa31.2■■■□□ 2.59
RPL28-209ENST00000560055 RSF1Q96T23 1441 aaPredicted RBP31.13■■■□□ 2.57
RPL28-209ENST00000560055 BAZ1BQ9UIG0 1483 aaKnown RBP31.1■■■□□ 2.57
RPL28-209ENST00000560055 WIZO95785 1651 aa31.04■■■□□ 2.56
RPL28-209ENST00000560055 TOP2AP11388 1531 aaKnown RBP30.75■■■□□ 2.51
RPL28-209ENST00000560055 NESP48681 1621 aa30.51■■■□□ 2.48
RPL28-209ENST00000560055 ERCC6Q03468 1493 aa30.5■■■□□ 2.47
RPL28-209ENST00000560055 LAMC3Q9Y6N6 1575 aa30.46■■■□□ 2.47
RPL28-209ENST00000560055 CADPSQ9ULU8 1353 aa30.43■■■□□ 2.46
RPL28-209ENST00000560055 CCDC88BA6NC98 1476 aa30.39■■■□□ 2.46
RPL28-209ENST00000560055 SUPT5HO00267 1087 aaKnown RBP30.36■■■□□ 2.45
RPL28-209ENST00000560055 CUX2O14529 1486 aa30.33■■■□□ 2.45
RPL28-209ENST00000560055 CFTRP13569 1480 aa30.31■■■□□ 2.44
RPL28-209ENST00000560055 PDS5BQ9NTI5 1447 aa30.25■■■□□ 2.43
RPL28-209ENST00000560055 KIF21AQ7Z4S6 1674 aa30.13■■■□□ 2.41
RPL28-209ENST00000560055 THOC2Q8NI27 1593 aaKnown RBP30.11■■■□□ 2.41
RPL28-209ENST00000560055 DNAJC5Q9H3Z4 198 aa30.11■■■□□ 2.41
RPL28-209ENST00000560055 FANCD2Q9BXW9 1451 aa30.06■■■□□ 2.4
RPL28-209ENST00000560055 PRDM2Q13029 1718 aa30.01■■■□□ 2.39
RPL28-209ENST00000560055 CEP164Q9UPV0 1460 aa30■■■□□ 2.39
RPL28-209ENST00000560055 MRC2Q9UBG0 1479 aa29.94■■■□□ 2.38
RPL28-209ENST00000560055 WDR62O43379 1518 aa29.86■■■□□ 2.37
RPL28-209ENST00000560055 URB2Q14146 1524 aaKnown RBP29.77■■■□□ 2.36
RPL28-209ENST00000560055 TOPBP1Q92547 1522 aa29.61■■■□□ 2.33
RPL28-209ENST00000560055 ABCC8Q09428 1581 aa29.6■■■□□ 2.33
RPL28-209ENST00000560055 DNMBPQ6XZF7 1577 aa29.58■■■□□ 2.33
RPL28-209ENST00000560055 CUX1P39880 1505 aa29.46■■■□□ 2.31
RPL28-209ENST00000560055 POLA1P09884 1462 aaPredicted RBP29.38■■■□□ 2.29
RPL28-209ENST00000560055 IFT140Q96RY7 1462 aa29.38■■■□□ 2.29
RPL28-209ENST00000560055 FGD5Q6ZNL6 1462 aa29.31■■■□□ 2.28
RPL28-209ENST00000560055 WRNQ14191 1432 aaPredicted RBP eCLIP29.31■■■□□ 2.28
RPL28-209ENST00000560055 TARBP1Q13395 1621 aaKnown RBP29.28■■■□□ 2.28
RPL28-209ENST00000560055 ZNF608Q9ULD9 1512 aaPredicted RBP29.25■■■□□ 2.27
RPL28-209ENST00000560055 SYNJ1O43426 1573 aa29.24■■■□□ 2.27
RPL28-209ENST00000560055 SOGA1O94964 1423 aa29.24■■■□□ 2.27
RPL28-209ENST00000560055 TOP2BQ02880 1626 aa29.23■■■□□ 2.27
RPL28-209ENST00000560055 RAD54L2Q9Y4B4 1467 aa29.23■■■□□ 2.27
RPL28-209ENST00000560055 BIVM-ERCC5R4GMW8 1640 aa29.22■■■□□ 2.27
RPL28-209ENST00000560055 EIF4G3O43432 1585 aaKnown RBP29.11■■■□□ 2.25
RPL28-209ENST00000560055 AQRO60306 1485 aaKnown RBP eCLIP29.09■■■□□ 2.253e-8■■■■□ 26.2
RPL28-209ENST00000560055 WDR97A6NE52 1622 aa29.06■■■□□ 2.24
RPL28-209ENST00000560055 ABCA10Q8WWZ4 1543 aa29.06■■■□□ 2.24
RPL28-209ENST00000560055 TDRD9Q8NDG6 1382 aaKnown RBP29.05■■■□□ 2.24
RPL28-209ENST00000560055 OSCARQ8IYS5 282 aa29.01■■■□□ 2.23
RPL28-209ENST00000560055 TRIM41Q8WV44 630 aa28.94■■■□□ 2.22
RPL28-209ENST00000560055 ABCA5Q8WWZ7 1642 aa28.92■■■□□ 2.22
RPL28-209ENST00000560055 GAPVD1Q14C86 1478 aa28.91■■■□□ 2.22
RPL28-209ENST00000560055 GRIN2BQ13224 1484 aa28.89■■■□□ 2.22
RPL28-209ENST00000560055 SNAPC4Q5SXM2 1469 aa28.82■■■□□ 2.2
RPL28-209ENST00000560055 MAGI1Q96QZ7 1491 aaPredicted RBP28.8■■■□□ 2.2
RPL28-209ENST00000560055 PBRM1Q86U86 1689 aa28.8■■■□□ 2.2
RPL28-209ENST00000560055 CHD1O14646 1710 aa28.72■■■□□ 2.19
RPL28-209ENST00000560055 ERICH3Q5RHP9 1530 aa28.71■■■□□ 2.19
RPL28-209ENST00000560055 SYNJ2O15056 1496 aa28.69■■■□□ 2.18
RPL28-209ENST00000560055 KIF27Q86VH2 1401 aa28.68■■■□□ 2.18
RPL28-209ENST00000560055 RIMBP3CA6NJZ7 1639 aa28.67■■■□□ 2.18
RPL28-209ENST00000560055 RIMBP3BA6NNM3 1639 aa28.67■■■□□ 2.18
RPL28-209ENST00000560055 RIMBP3Q9UFD9 1639 aa28.67■■■□□ 2.18
RPL28-209ENST00000560055 FBLN2P98095 1184 aa28.64■■■□□ 2.18
RPL28-209ENST00000560055 ADAMTS12P58397 1594 aa28.62■■■□□ 2.17
RPL28-209ENST00000560055 CHMP7Q8WUX9 453 aaPredicted RBP28.62■■■□□ 2.17
RPL28-209ENST00000560055 FHAD1B1AJZ9 1412 aa28.59■■■□□ 2.17
RPL28-209ENST00000560055 IGF1RP08069 1367 aa28.58■■■□□ 2.17
RPL28-209ENST00000560055 ARHGEF11O15085 1522 aa28.58■■■□□ 2.17
RPL28-209ENST00000560055 GRIN2AQ12879 1464 aa28.52■■■□□ 2.16
RPL28-209ENST00000560055 CHIC1Q5VXU3 224 aa28.49■■■□□ 2.15
RPL28-209ENST00000560055 RUSC2Q8N2Y8 1516 aa28.48■■■□□ 2.15
RPL28-209ENST00000560055 CUL7Q14999 1698 aa28.45■■■□□ 2.15
RPL28-209ENST00000560055 CLASP1Q7Z460 1538 aa28.44■■■□□ 2.14
RPL28-209ENST00000560055 NUP160Q12769 1436 aa28.42■■■□□ 2.14
RPL28-209ENST00000560055 CARMIL1Q5VZK9 1371 aa28.38■■■□□ 2.13
RPL28-209ENST00000560055 CYB5RLQ6IPT4 315 aa28.38■■■□□ 2.13
RPL28-209ENST00000560055 CEP170Q5SW79 1584 aa28.37■■■□□ 2.13
RPL28-209ENST00000560055 ARAP1Q96P48 1450 aa28.33■■■□□ 2.13
RPL28-209ENST00000560055 EEA1Q15075 1411 aa28.25■■■□□ 2.11
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms