RNA–Protein interactions for RNA: ENST00000491629.5

USF1-206, Transcript of upstream transcription factor 1, humanhuman

TSL 2

Gene USF1, Length 933 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF1-206ENST00000491629 NISCHQ9Y2I1 1504 aa33.95■■■■□ 3.03
USF1-206ENST00000491629 ABCC9O60706 1549 aa30.89■■■□□ 2.54
USF1-206ENST00000491629 CCDC180Q9P1Z9 1646 aa30.62■■■□□ 2.49
USF1-206ENST00000491629 DNAJC5BQ9UF47 199 aa29.33■■■□□ 2.29
USF1-206ENST00000491629 RB1CC1Q8TDY2 1594 aa29.24■■■□□ 2.27
USF1-206ENST00000491629 NACADO15069 1562 aa28.96■■■□□ 2.23
USF1-206ENST00000491629 UNC13AQ9UPW8 1703 aa28.8■■■□□ 2.2
USF1-206ENST00000491629 PABPN1Q86U42 306 aaKnown RBP eCLIP28.68■■■□□ 2.18
USF1-206ENST00000491629 DCAF8L2P0C7V8 631 aa28.66■■■□□ 2.18
USF1-206ENST00000491629 BICRAQ9NZM4 1560 aa28.54■■■□□ 2.16
USF1-206ENST00000491629 MYO15BQ96JP2 1530 aa28.46■■■□□ 2.15
USF1-206ENST00000491629 ZCCHC6Q5VYS8 1495 aaKnown RBP28.08■■■□□ 2.09
USF1-206ENST00000491629 DCAF1Q9Y4B6 1507 aa28.01■■■□□ 2.07
USF1-206ENST00000491629 SHROOM4Q9ULL8 1493 aa27.94■■■□□ 2.06
USF1-206ENST00000491629 CC2D2AQ9P2K1 1620 aa27.93■■■□□ 2.06
USF1-206ENST00000491629 SCRIBQ14160 1630 aa27.89■■■□□ 2.05
USF1-206ENST00000491629 CECR2Q9BXF3 1484 aa27.83■■■□□ 2.04
USF1-206ENST00000491629 EIF4G1Q04637 1599 aaKnown RBP27.77■■■□□ 2.04
USF1-206ENST00000491629 DNAJC5Q9H3Z4 198 aa27.05■■□□□ 1.92
USF1-206ENST00000491629 NCAPD3P42695 1498 aa26.75■■□□□ 1.87
USF1-206ENST00000491629 CUX2O14529 1486 aa26.69■■□□□ 1.86
USF1-206ENST00000491629 ATAD2BQ9ULI0 1458 aa26.65■■□□□ 1.86
USF1-206ENST00000491629 ERCC6Q03468 1493 aa26.6■■□□□ 1.85
USF1-206ENST00000491629 SMARCA4P51532 1647 aa26.58■■□□□ 1.85
USF1-206ENST00000491629 HMGXB3Q12766 1538 aa26.54■■□□□ 1.84
USF1-206ENST00000491629 SMARCA2P51531 1590 aa26.51■■□□□ 1.83
USF1-206ENST00000491629 NESP48681 1621 aa26.5■■□□□ 1.83
USF1-206ENST00000491629 BAZ1AQ9NRL2 1556 aaPredicted RBP26.33■■□□□ 1.81
USF1-206ENST00000491629 PEG3Q9GZU2 1588 aa26.33■■□□□ 1.8
USF1-206ENST00000491629 BAZ1BQ9UIG0 1483 aaKnown RBP26.32■■□□□ 1.8
USF1-206ENST00000491629 THOC2Q8NI27 1593 aaKnown RBP26.32■■□□□ 1.8
USF1-206ENST00000491629 KIF21AQ7Z4S6 1674 aa26.21■■□□□ 1.79
USF1-206ENST00000491629 MROH2BQ7Z745 1585 aa26.2■■□□□ 1.78
USF1-206ENST00000491629 LAMC3Q9Y6N6 1575 aa26.2■■□□□ 1.78
USF1-206ENST00000491629 PDS5BQ9NTI5 1447 aa25.97■■□□□ 1.75
USF1-206ENST00000491629 WIZO95785 1651 aa25.9■■□□□ 1.74
USF1-206ENST00000491629 CADPSQ9ULU8 1353 aa25.89■■□□□ 1.74
USF1-206ENST00000491629 MRC2Q9UBG0 1479 aa25.83■■□□□ 1.73
USF1-206ENST00000491629 WDR62O43379 1518 aa25.83■■□□□ 1.72
USF1-206ENST00000491629 TRIM41Q8WV44 630 aa25.69■■□□□ 1.7
USF1-206ENST00000491629 CEP164Q9UPV0 1460 aa25.65■■□□□ 1.7
USF1-206ENST00000491629 FANCD2Q9BXW9 1451 aa25.62■■□□□ 1.69
USF1-206ENST00000491629 CFTRP13569 1480 aa25.57■■□□□ 1.68
USF1-206ENST00000491629 URB2Q14146 1524 aaKnown RBP25.49■■□□□ 1.67
USF1-206ENST00000491629 RSF1Q96T23 1441 aaPredicted RBP25.49■■□□□ 1.67
USF1-206ENST00000491629 TOP2AP11388 1531 aaKnown RBP25.47■■□□□ 1.67
USF1-206ENST00000491629 PRDM2Q13029 1718 aa25.41■■□□□ 1.66
USF1-206ENST00000491629 OSCARQ8IYS5 282 aa25.37■■□□□ 1.65
USF1-206ENST00000491629 ZNF608Q9ULD9 1512 aaPredicted RBP25.23■■□□□ 1.63
USF1-206ENST00000491629 RIMBP3CA6NJZ7 1639 aa25.23■■□□□ 1.63
USF1-206ENST00000491629 RIMBP3BA6NNM3 1639 aa25.23■■□□□ 1.63
USF1-206ENST00000491629 RIMBP3Q9UFD9 1639 aa25.23■■□□□ 1.63
USF1-206ENST00000491629 CCDC88BA6NC98 1476 aa25.2■■□□□ 1.62
USF1-206ENST00000491629 IFT140Q96RY7 1462 aa25.15■■□□□ 1.62
USF1-206ENST00000491629 TOPBP1Q92547 1522 aa25.13■■□□□ 1.61
USF1-206ENST00000491629 ARHGEF11O15085 1522 aa25.07■■□□□ 1.6
USF1-206ENST00000491629 EIF4G3O43432 1585 aaKnown RBP25.07■■□□□ 1.6
USF1-206ENST00000491629 DNMBPQ6XZF7 1577 aa25.01■■□□□ 1.59
USF1-206ENST00000491629 CHD1O14646 1710 aa25■■□□□ 1.59
USF1-206ENST00000491629 TARBP1Q13395 1621 aaKnown RBP25■■□□□ 1.59
USF1-206ENST00000491629 ABCC8Q09428 1581 aa24.96■■□□□ 1.59
USF1-206ENST00000491629 AQRO60306 1485 aaKnown RBP eCLIP24.93■■□□□ 1.581e-6■■■■□ 20
USF1-206ENST00000491629 POLA1P09884 1462 aaPredicted RBP24.86■■□□□ 1.57
USF1-206ENST00000491629 CYB5RLQ6IPT4 315 aa24.83■■□□□ 1.57
USF1-206ENST00000491629 ARAP1Q96P48 1450 aa24.83■■□□□ 1.56
USF1-206ENST00000491629 RAD54L2Q9Y4B4 1467 aa24.79■■□□□ 1.56
USF1-206ENST00000491629 FBLN2P98095 1184 aa24.71■■□□□ 1.55
USF1-206ENST00000491629 TDRD9Q8NDG6 1382 aaKnown RBP24.7■■□□□ 1.55
USF1-206ENST00000491629 SOGA1O94964 1423 aa24.68■■□□□ 1.54
USF1-206ENST00000491629 CLASP1Q7Z460 1538 aa24.66■■□□□ 1.54
USF1-206ENST00000491629 SNAPC4Q5SXM2 1469 aa24.64■■□□□ 1.54
USF1-206ENST00000491629 FGD5Q6ZNL6 1462 aa24.64■■□□□ 1.54
USF1-206ENST00000491629 CUX1P39880 1505 aa24.62■■□□□ 1.53
USF1-206ENST00000491629 WDR97A6NE52 1622 aa24.61■■□□□ 1.53
USF1-206ENST00000491629 TRHP20396 242 aaPredicted RBP24.59■■□□□ 1.53
USF1-206ENST00000491629 MAGI1Q96QZ7 1491 aaPredicted RBP24.53■■□□□ 1.52
USF1-206ENST00000491629 SYNJ1O43426 1573 aa24.53■■□□□ 1.52
USF1-206ENST00000491629 PBRM1Q86U86 1689 aa24.51■■□□□ 1.51
USF1-206ENST00000491629 GRIN2BQ13224 1484 aa24.5■■□□□ 1.51
USF1-206ENST00000491629 SYNJ2O15056 1496 aa24.47■■□□□ 1.51
USF1-206ENST00000491629 CHMP7Q8WUX9 453 aaPredicted RBP24.47■■□□□ 1.51
USF1-206ENST00000491629 ABCA5Q8WWZ7 1642 aa24.39■■□□□ 1.5
USF1-206ENST00000491629 GAPVD1Q14C86 1478 aa24.38■■□□□ 1.49
USF1-206ENST00000491629 ABCA10Q8WWZ4 1543 aa24.35■■□□□ 1.49
USF1-206ENST00000491629 ERCC6L2Q5T890 1561 aa24.3■■□□□ 1.48
USF1-206ENST00000491629 CEP170Q5SW79 1584 aa24.21■■□□□ 1.47
USF1-206ENST00000491629 GRIN2AQ12879 1464 aa24.21■■□□□ 1.47
USF1-206ENST00000491629 ADAMTS12P58397 1594 aa24.2■■□□□ 1.47
USF1-206ENST00000491629 BIVM-ERCC5R4GMW8 1640 aa24.17■■□□□ 1.46
USF1-206ENST00000491629 SHROOM2Q13796 1616 aa24.16■■□□□ 1.46
USF1-206ENST00000491629 NUP160Q12769 1436 aa24.16■■□□□ 1.46
USF1-206ENST00000491629 TOP2BQ02880 1626 aa24.13■■□□□ 1.45
USF1-206ENST00000491629 WRNQ14191 1432 aaPredicted RBP eCLIP24.11■■□□□ 1.45
USF1-206ENST00000491629 KIF13AQ9H1H9 1805 aa24.07■■□□□ 1.44
USF1-206ENST00000491629 SUPT5HO00267 1087 aaKnown RBP24.06■■□□□ 1.44
USF1-206ENST00000491629 AEBP2Q6ZN18 517 aaPredicted RBP24.05■■□□□ 1.44
USF1-206ENST00000491629 FHAD1B1AJZ9 1412 aa24.04■■□□□ 1.44
USF1-206ENST00000491629 ERICH3Q5RHP9 1530 aa24.02■■□□□ 1.44
USF1-206ENST00000491629 PRG4Q92954 1404 aaPredicted RBP23.92■■□□□ 1.42
USF1-206ENST00000491629 RUSC2Q8N2Y8 1516 aa23.88■■□□□ 1.41
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms