RNA–Protein interactions for RNA: ENST00000554180.5

TDP1-209, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 5

Gene TDP1, Length 910 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-209ENST00000554180 NISCHQ9Y2I1 1504 aa17.78■□□□□ 0.44
TDP1-209ENST00000554180 CCDC180Q9P1Z9 1646 aa15.64■□□□□ 0.09
TDP1-209ENST00000554180 ZCCHC6Q5VYS8 1495 aaKnown RBP14.94□□□□□ -0.02
TDP1-209ENST00000554180 ABCC9O60706 1549 aa14.84□□□□□ -0.03
TDP1-209ENST00000554180 DCAF1Q9Y4B6 1507 aa14.79□□□□□ -0.04
TDP1-209ENST00000554180 MYO15BQ96JP2 1530 aa14.71□□□□□ -0.06
TDP1-209ENST00000554180 NACADO15069 1562 aa14.6□□□□□ -0.07
TDP1-209ENST00000554180 DCAF8L2P0C7V8 631 aa14.6□□□□□ -0.07
TDP1-209ENST00000554180 RB1CC1Q8TDY2 1594 aa14.51□□□□□ -0.09
TDP1-209ENST00000554180 SCRIBQ14160 1630 aa14.25□□□□□ -0.13
TDP1-209ENST00000554180 SHROOM4Q9ULL8 1493 aa14.24□□□□□ -0.13
TDP1-209ENST00000554180 UNC13AQ9UPW8 1703 aa14.1□□□□□ -0.15
TDP1-209ENST00000554180 BICRAQ9NZM4 1560 aa14.03□□□□□ -0.16
TDP1-209ENST00000554180 PABPN1Q86U42 306 aaKnown RBP eCLIP13.91□□□□□ -0.18
TDP1-209ENST00000554180 CECR2Q9BXF3 1484 aa13.78□□□□□ -0.2
TDP1-209ENST00000554180 BAZ1AQ9NRL2 1556 aaPredicted RBP13.78□□□□□ -0.2
TDP1-209ENST00000554180 RSF1Q96T23 1441 aaPredicted RBP13.71□□□□□ -0.22
TDP1-209ENST00000554180 SMARCA4P51532 1647 aa13.7□□□□□ -0.22
TDP1-209ENST00000554180 MROH2BQ7Z745 1585 aa13.69□□□□□ -0.22
TDP1-209ENST00000554180 EIF4G1Q04637 1599 aaKnown RBP13.63□□□□□ -0.23
TDP1-209ENST00000554180 SUPT5HO00267 1087 aaKnown RBP13.63□□□□□ -0.23
TDP1-209ENST00000554180 PEG3Q9GZU2 1588 aa13.61□□□□□ -0.23
TDP1-209ENST00000554180 SMARCA2P51531 1590 aa13.56□□□□□ -0.24
TDP1-209ENST00000554180 WIZO95785 1651 aa13.53□□□□□ -0.24
TDP1-209ENST00000554180 ATAD2BQ9ULI0 1458 aa13.53□□□□□ -0.24
TDP1-209ENST00000554180 TOP2AP11388 1531 aaKnown RBP13.48□□□□□ -0.25
TDP1-209ENST00000554180 NCAPD3P42695 1498 aa13.48□□□□□ -0.25
TDP1-209ENST00000554180 HMGXB3Q12766 1538 aa13.46□□□□□ -0.25
TDP1-209ENST00000554180 CC2D2AQ9P2K1 1620 aa13.45□□□□□ -0.26
TDP1-209ENST00000554180 BAZ1BQ9UIG0 1483 aaKnown RBP13.44□□□□□ -0.26
TDP1-209ENST00000554180 CCDC88BA6NC98 1476 aa13.29□□□□□ -0.28
TDP1-209ENST00000554180 DNAJC5BQ9UF47 199 aa13.2□□□□□ -0.3
TDP1-209ENST00000554180 CFTRP13569 1480 aa13.12□□□□□ -0.31
TDP1-209ENST00000554180 CADPSQ9ULU8 1353 aa13.1□□□□□ -0.31
TDP1-209ENST00000554180 LAMC3Q9Y6N6 1575 aa13.04□□□□□ -0.32
TDP1-209ENST00000554180 PRDM2Q13029 1718 aa13□□□□□ -0.33
TDP1-209ENST00000554180 CHIC1Q5VXU3 224 aa13□□□□□ -0.33
TDP1-209ENST00000554180 NESP48681 1621 aa12.95□□□□□ -0.34
TDP1-209ENST00000554180 PDS5BQ9NTI5 1447 aa12.95□□□□□ -0.34
TDP1-209ENST00000554180 FANCD2Q9BXW9 1451 aa12.93□□□□□ -0.34
TDP1-209ENST00000554180 WRNQ14191 1432 aaPredicted RBP eCLIP12.93□□□□□ -0.34
TDP1-209ENST00000554180 ABCC8Q09428 1581 aa12.91□□□□□ -0.34
TDP1-209ENST00000554180 CEP164Q9UPV0 1460 aa12.89□□□□□ -0.35
TDP1-209ENST00000554180 TRIM41Q8WV44 630 aa12.88□□□□□ -0.35
TDP1-209ENST00000554180 TOP2BQ02880 1626 aa12.84□□□□□ -0.35
TDP1-209ENST00000554180 SYNJ1O43426 1573 aa12.84□□□□□ -0.35
TDP1-209ENST00000554180 BIVM-ERCC5R4GMW8 1640 aa12.83□□□□□ -0.36
TDP1-209ENST00000554180 CUX1P39880 1505 aa12.83□□□□□ -0.36
TDP1-209ENST00000554180 DNMBPQ6XZF7 1577 aa12.81□□□□□ -0.36
TDP1-209ENST00000554180 KIF21AQ7Z4S6 1674 aa12.8□□□□□ -0.36
TDP1-209ENST00000554180 ERCC6Q03468 1493 aa12.78□□□□□ -0.36
TDP1-209ENST00000554180 MRC2Q9UBG0 1479 aa12.78□□□□□ -0.36
TDP1-209ENST00000554180 TOPBP1Q92547 1522 aa12.78□□□□□ -0.36
TDP1-209ENST00000554180 URB2Q14146 1524 aaKnown RBP12.77□□□□□ -0.37
TDP1-209ENST00000554180 WDR62O43379 1518 aa12.73□□□□□ -0.37
TDP1-209ENST00000554180 FGD5Q6ZNL6 1462 aa12.72□□□□□ -0.37
TDP1-209ENST00000554180 POLA1P09884 1462 aaPredicted RBP12.71□□□□□ -0.38
TDP1-209ENST00000554180 EEA1Q15075 1411 aa12.71□□□□□ -0.38
TDP1-209ENST00000554180 THOC2Q8NI27 1593 aaKnown RBP12.7□□□□□ -0.38
TDP1-209ENST00000554180 ABCA10Q8WWZ4 1543 aa12.65□□□□□ -0.38
TDP1-209ENST00000554180 SOGA1O94964 1423 aa12.64□□□□□ -0.39
TDP1-209ENST00000554180 KIF27Q86VH2 1401 aa12.62□□□□□ -0.39
TDP1-209ENST00000554180 CUX2O14529 1486 aa12.61□□□□□ -0.39
TDP1-209ENST00000554180 IFT140Q96RY7 1462 aa12.61□□□□□ -0.39
TDP1-209ENST00000554180 RAD54L2Q9Y4B4 1467 aa12.6□□□□□ -0.39
TDP1-209ENST00000554180 WDR97A6NE52 1622 aa12.59□□□□□ -0.39
TDP1-209ENST00000554180 TARBP1Q13395 1621 aaKnown RBP12.59□□□□□ -0.39
TDP1-209ENST00000554180 RUSC2Q8N2Y8 1516 aa12.57□□□□□ -0.4
TDP1-209ENST00000554180 CSRNP3Q8WYN3 585 aa12.56□□□□□ -0.4
TDP1-209ENST00000554180 FAM9AQ8IZU1 332 aaPredicted RBP12.55□□□□□ -0.4
TDP1-209ENST00000554180 ABCA5Q8WWZ7 1642 aa12.54□□□□□ -0.4
TDP1-209ENST00000554180 GAPVD1Q14C86 1478 aa12.52□□□□□ -0.41
TDP1-209ENST00000554180 IGF1RP08069 1367 aa12.51□□□□□ -0.41
TDP1-209ENST00000554180 ERICH3Q5RHP9 1530 aa12.51□□□□□ -0.41
TDP1-209ENST00000554180 TDRD9Q8NDG6 1382 aaKnown RBP12.5□□□□□ -0.41
TDP1-209ENST00000554180 PRXQ9BXM0 1461 aa12.5□□□□□ -0.41
TDP1-209ENST00000554180 KIF21BO75037 1637 aa12.5□□□□□ -0.41
TDP1-209ENST00000554180 ZNF608Q9ULD9 1512 aaPredicted RBP12.47□□□□□ -0.41
TDP1-209ENST00000554180 GOLGA3Q08378 1498 aa12.47□□□□□ -0.41
TDP1-209ENST00000554180 GRIN2BQ13224 1484 aa12.46□□□□□ -0.41
TDP1-209ENST00000554180 CUL7Q14999 1698 aa12.46□□□□□ -0.41
TDP1-209ENST00000554180 EIF4G3O43432 1585 aaKnown RBP12.46□□□□□ -0.42
TDP1-209ENST00000554180 AQRO60306 1485 aaKnown RBP eCLIP12.46□□□□□ -0.422e-7■■■■□ 20.2
TDP1-209ENST00000554180 CARMIL1Q5VZK9 1371 aa12.43□□□□□ -0.42
TDP1-209ENST00000554180 RAPGEF2Q9Y4G8 1499 aa12.42□□□□□ -0.42
TDP1-209ENST00000554180 PBRM1Q86U86 1689 aa12.42□□□□□ -0.42
TDP1-209ENST00000554180 LOC105371045A0A1W2PR82 267 aa12.41□□□□□ -0.42
TDP1-209ENST00000554180 MAGI1Q96QZ7 1491 aaPredicted RBP12.4□□□□□ -0.42
TDP1-209ENST00000554180 FHAD1B1AJZ9 1412 aa12.4□□□□□ -0.42
TDP1-209ENST00000554180 ADAMTS12P58397 1594 aa12.39□□□□□ -0.43
TDP1-209ENST00000554180 TNIKQ9UKE5 1360 aa12.39□□□□□ -0.43
TDP1-209ENST00000554180 SNAPC4Q5SXM2 1469 aa12.37□□□□□ -0.43
TDP1-209ENST00000554180 SYNJ2O15056 1496 aa12.34□□□□□ -0.43
TDP1-209ENST00000554180 UBTFP17480 764 aaKnown RBP12.34□□□□□ -0.43
TDP1-209ENST00000554180 EHMT2Q96KQ7 1210 aa12.31□□□□□ -0.44
TDP1-209ENST00000554180 GRIN2AQ12879 1464 aa12.3□□□□□ -0.44
TDP1-209ENST00000554180 CEP162Q5TB80 1403 aa12.29□□□□□ -0.44
TDP1-209ENST00000554180 CHMP7Q8WUX9 453 aaPredicted RBP12.27□□□□□ -0.45
TDP1-209ENST00000554180 CLIP1P30622 1438 aa12.25□□□□□ -0.45
TDP1-209ENST00000554180 NUP160Q12769 1436 aa12.25□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms