RNA–Protein interactions for RNA: ENST00000560881.5

RPL28-211, Transcript of ribosomal protein L28, humanhuman

TSL 5

Gene RPL28, Length 1,692 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPL28-211ENST00000560881 NISCHQ9Y2I1 1504 aa40.21■■■■■ 4.03
RPL28-211ENST00000560881 CCDC180Q9P1Z9 1646 aa35.65■■■■□ 3.3
RPL28-211ENST00000560881 ABCC9O60706 1549 aa34.75■■■■□ 3.15
RPL28-211ENST00000560881 ZCCHC6Q5VYS8 1495 aaKnown RBP33.56■■■□□ 2.96
RPL28-211ENST00000560881 DCAF8L2P0C7V8 631 aa33.55■■■□□ 2.96
RPL28-211ENST00000560881 RB1CC1Q8TDY2 1594 aa33.44■■■□□ 2.94
RPL28-211ENST00000560881 NACADO15069 1562 aa33.43■■■□□ 2.94
RPL28-211ENST00000560881 MYO15BQ96JP2 1530 aa33.25■■■□□ 2.91
RPL28-211ENST00000560881 DCAF1Q9Y4B6 1507 aa33.21■■■□□ 2.91
RPL28-211ENST00000560881 UNC13AQ9UPW8 1703 aa32.83■■■□□ 2.85
RPL28-211ENST00000560881 SCRIBQ14160 1630 aa32.65■■■□□ 2.82
RPL28-211ENST00000560881 PABPN1Q86U42 306 aaKnown RBP eCLIP32.5■■■□□ 2.79
RPL28-211ENST00000560881 BICRAQ9NZM4 1560 aa32.49■■■□□ 2.79
RPL28-211ENST00000560881 SHROOM4Q9ULL8 1493 aa32.01■■■□□ 2.71
RPL28-211ENST00000560881 DNAJC5BQ9UF47 199 aa31.7■■■□□ 2.66
RPL28-211ENST00000560881 EIF4G1Q04637 1599 aaKnown RBP31.6■■■□□ 2.65
RPL28-211ENST00000560881 CC2D2AQ9P2K1 1620 aa31.43■■■□□ 2.62
RPL28-211ENST00000560881 CECR2Q9BXF3 1484 aa31.37■■■□□ 2.61
RPL28-211ENST00000560881 SMARCA4P51532 1647 aa31.19■■■□□ 2.58
RPL28-211ENST00000560881 BAZ1AQ9NRL2 1556 aaPredicted RBP31.14■■■□□ 2.58
RPL28-211ENST00000560881 MROH2BQ7Z745 1585 aa31.05■■■□□ 2.56
RPL28-211ENST00000560881 ATAD2BQ9ULI0 1458 aa30.93■■■□□ 2.54
RPL28-211ENST00000560881 SMARCA2P51531 1590 aa30.87■■■□□ 2.53
RPL28-211ENST00000560881 NCAPD3P42695 1498 aa30.83■■■□□ 2.53
RPL28-211ENST00000560881 PEG3Q9GZU2 1588 aa30.83■■■□□ 2.53
RPL28-211ENST00000560881 WIZO95785 1651 aa30.77■■■□□ 2.52
RPL28-211ENST00000560881 HMGXB3Q12766 1538 aa30.73■■■□□ 2.51
RPL28-211ENST00000560881 RSF1Q96T23 1441 aaPredicted RBP30.73■■■□□ 2.51
RPL28-211ENST00000560881 BAZ1BQ9UIG0 1483 aaKnown RBP30.69■■■□□ 2.5
RPL28-211ENST00000560881 TOP2AP11388 1531 aaKnown RBP30.38■■■□□ 2.45
RPL28-211ENST00000560881 NESP48681 1621 aa30.16■■■□□ 2.42
RPL28-211ENST00000560881 SUPT5HO00267 1087 aaKnown RBP30.16■■■□□ 2.42
RPL28-211ENST00000560881 CCDC88BA6NC98 1476 aa30.02■■■□□ 2.4
RPL28-211ENST00000560881 LAMC3Q9Y6N6 1575 aa30.02■■■□□ 2.4
RPL28-211ENST00000560881 CADPSQ9ULU8 1353 aa29.96■■■□□ 2.39
RPL28-211ENST00000560881 ERCC6Q03468 1493 aa29.89■■■□□ 2.37
RPL28-211ENST00000560881 CFTRP13569 1480 aa29.84■■■□□ 2.37
RPL28-211ENST00000560881 KIF21AQ7Z4S6 1674 aa29.83■■■□□ 2.37
RPL28-211ENST00000560881 PDS5BQ9NTI5 1447 aa29.77■■■□□ 2.36
RPL28-211ENST00000560881 PRDM2Q13029 1718 aa29.72■■■□□ 2.35
RPL28-211ENST00000560881 FANCD2Q9BXW9 1451 aa29.66■■■□□ 2.34
RPL28-211ENST00000560881 THOC2Q8NI27 1593 aaKnown RBP29.64■■■□□ 2.34
RPL28-211ENST00000560881 CEP164Q9UPV0 1460 aa29.6■■■□□ 2.33
RPL28-211ENST00000560881 MRC2Q9UBG0 1479 aa29.5■■■□□ 2.31
RPL28-211ENST00000560881 CUX2O14529 1486 aa29.43■■■□□ 2.3
RPL28-211ENST00000560881 WDR62O43379 1518 aa29.41■■■□□ 2.3
RPL28-211ENST00000560881 URB2Q14146 1524 aaKnown RBP29.38■■■□□ 2.29
RPL28-211ENST00000560881 TOPBP1Q92547 1522 aa29.22■■■□□ 2.27
RPL28-211ENST00000560881 DNMBPQ6XZF7 1577 aa29.2■■■□□ 2.26
RPL28-211ENST00000560881 ABCC8Q09428 1581 aa29.12■■■□□ 2.25
RPL28-211ENST00000560881 CUX1P39880 1505 aa29.12■■■□□ 2.25
RPL28-211ENST00000560881 POLA1P09884 1462 aaPredicted RBP29■■■□□ 2.23
RPL28-211ENST00000560881 FGD5Q6ZNL6 1462 aa28.96■■■□□ 2.23
RPL28-211ENST00000560881 WRNQ14191 1432 aaPredicted RBP eCLIP28.96■■■□□ 2.23
RPL28-211ENST00000560881 SYNJ1O43426 1573 aa28.96■■■□□ 2.23
RPL28-211ENST00000560881 IFT140Q96RY7 1462 aa28.93■■■□□ 2.22
RPL28-211ENST00000560881 TARBP1Q13395 1621 aaKnown RBP28.91■■■□□ 2.22
RPL28-211ENST00000560881 BIVM-ERCC5R4GMW8 1640 aa28.9■■■□□ 2.22
RPL28-211ENST00000560881 RAD54L2Q9Y4B4 1467 aa28.9■■■□□ 2.22
RPL28-211ENST00000560881 TOP2BQ02880 1626 aa28.89■■■□□ 2.22
RPL28-211ENST00000560881 ZNF608Q9ULD9 1512 aaPredicted RBP28.88■■■□□ 2.21
RPL28-211ENST00000560881 SOGA1O94964 1423 aa28.84■■■□□ 2.21
RPL28-211ENST00000560881 EIF4G3O43432 1585 aaKnown RBP28.78■■■□□ 2.2
RPL28-211ENST00000560881 WDR97A6NE52 1622 aa28.76■■■□□ 2.19
RPL28-211ENST00000560881 AQRO60306 1485 aaKnown RBP eCLIP28.71■■■□□ 2.193e-8■■■■□ 26.2
RPL28-211ENST00000560881 TDRD9Q8NDG6 1382 aaKnown RBP28.69■■■□□ 2.18
RPL28-211ENST00000560881 ABCA10Q8WWZ4 1543 aa28.65■■■□□ 2.18
RPL28-211ENST00000560881 ABCA5Q8WWZ7 1642 aa28.57■■■□□ 2.16
RPL28-211ENST00000560881 PBRM1Q86U86 1689 aa28.54■■■□□ 2.16
RPL28-211ENST00000560881 GAPVD1Q14C86 1478 aa28.52■■■□□ 2.16
RPL28-211ENST00000560881 GRIN2BQ13224 1484 aa28.47■■■□□ 2.15
RPL28-211ENST00000560881 SNAPC4Q5SXM2 1469 aa28.46■■■□□ 2.15
RPL28-211ENST00000560881 CHD1O14646 1710 aa28.41■■■□□ 2.14
RPL28-211ENST00000560881 TRIM41Q8WV44 630 aa28.4■■■□□ 2.14
RPL28-211ENST00000560881 MAGI1Q96QZ7 1491 aaPredicted RBP28.37■■■□□ 2.13
RPL28-211ENST00000560881 FBLN2P98095 1184 aa28.32■■■□□ 2.12
RPL28-211ENST00000560881 ERICH3Q5RHP9 1530 aa28.3■■■□□ 2.12
RPL28-211ENST00000560881 KIF27Q86VH2 1401 aa28.3■■■□□ 2.12
RPL28-211ENST00000560881 ADAMTS12P58397 1594 aa28.29■■■□□ 2.12
RPL28-211ENST00000560881 DNAJC5Q9H3Z4 198 aa28.27■■■□□ 2.12
RPL28-211ENST00000560881 SYNJ2O15056 1496 aa28.27■■■□□ 2.12
RPL28-211ENST00000560881 RUSC2Q8N2Y8 1516 aa28.24■■■□□ 2.11
RPL28-211ENST00000560881 OSCARQ8IYS5 282 aa28.23■■■□□ 2.11
RPL28-211ENST00000560881 CHIC1Q5VXU3 224 aa28.23■■■□□ 2.11
RPL28-211ENST00000560881 CHMP7Q8WUX9 453 aaPredicted RBP28.22■■■□□ 2.11
RPL28-211ENST00000560881 IGF1RP08069 1367 aa28.18■■■□□ 2.1
RPL28-211ENST00000560881 FHAD1B1AJZ9 1412 aa28.18■■■□□ 2.1
RPL28-211ENST00000560881 GRIN2AQ12879 1464 aa28.14■■■□□ 2.09
RPL28-211ENST00000560881 CUL7Q14999 1698 aa28.12■■■□□ 2.09
RPL28-211ENST00000560881 CEP170Q5SW79 1584 aa28.04■■■□□ 2.08
RPL28-211ENST00000560881 CLASP1Q7Z460 1538 aa28.03■■■□□ 2.08
RPL28-211ENST00000560881 CARMIL1Q5VZK9 1371 aa28.01■■■□□ 2.08
RPL28-211ENST00000560881 NUP160Q12769 1436 aa27.98■■■□□ 2.07
RPL28-211ENST00000560881 FAM9AQ8IZU1 332 aaPredicted RBP27.91■■■□□ 2.06
RPL28-211ENST00000560881 RIMBP3CA6NJZ7 1639 aa27.89■■■□□ 2.05
RPL28-211ENST00000560881 RIMBP3BA6NNM3 1639 aa27.89■■■□□ 2.05
RPL28-211ENST00000560881 RIMBP3Q9UFD9 1639 aa27.89■■■□□ 2.05
RPL28-211ENST00000560881 RAPGEF2Q9Y4G8 1499 aa27.88■■■□□ 2.05
RPL28-211ENST00000560881 ARHGEF11O15085 1522 aa27.87■■■□□ 2.05
RPL28-211ENST00000560881 EEA1Q15075 1411 aa27.86■■■□□ 2.05
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms