RNA–Protein interactions for RNA: ENST00000631210.1

MECP2-220, Transcript of methyl-CpG binding protein 2, humanhuman

TSL 1 (best)

Gene MECP2, Length 490 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MECP2-220ENST00000631210 NISCHQ9Y2I1 1504 aa19.96■□□□□ 0.79
MECP2-220ENST00000631210 CCDC180Q9P1Z9 1646 aa17.58■□□□□ 0.41
MECP2-220ENST00000631210 ABCC9O60706 1549 aa16.93■□□□□ 0.3
MECP2-220ENST00000631210 ZCCHC6Q5VYS8 1495 aaKnown RBP16.7■□□□□ 0.26
MECP2-220ENST00000631210 DCAF1Q9Y4B6 1507 aa16.53■□□□□ 0.24
MECP2-220ENST00000631210 MYO15BQ96JP2 1530 aa16.49■□□□□ 0.23
MECP2-220ENST00000631210 NACADO15069 1562 aa16.46■□□□□ 0.23
MECP2-220ENST00000631210 DCAF8L2P0C7V8 631 aa16.43■□□□□ 0.22
MECP2-220ENST00000631210 RB1CC1Q8TDY2 1594 aa16.38■□□□□ 0.21
MECP2-220ENST00000631210 UNC13AQ9UPW8 1703 aa16.11■□□□□ 0.17
MECP2-220ENST00000631210 SCRIBQ14160 1630 aa16.07■□□□□ 0.16
MECP2-220ENST00000631210 BICRAQ9NZM4 1560 aa16■□□□□ 0.15
MECP2-220ENST00000631210 SHROOM4Q9ULL8 1493 aa15.89■□□□□ 0.13
MECP2-220ENST00000631210 PABPN1Q86U42 306 aaKnown RBP eCLIP15.87■□□□□ 0.13
MECP2-220ENST00000631210 CECR2Q9BXF3 1484 aa15.55■□□□□ 0.08
MECP2-220ENST00000631210 EIF4G1Q04637 1599 aaKnown RBP15.48■□□□□ 0.07
MECP2-220ENST00000631210 SMARCA4P51532 1647 aa15.42■□□□□ 0.06
MECP2-220ENST00000631210 MROH2BQ7Z745 1585 aa15.41■□□□□ 0.06
MECP2-220ENST00000631210 BAZ1AQ9NRL2 1556 aaPredicted RBP15.4■□□□□ 0.06
MECP2-220ENST00000631210 DNAJC5BQ9UF47 199 aa15.38■□□□□ 0.05
MECP2-220ENST00000631210 CC2D2AQ9P2K1 1620 aa15.34■□□□□ 0.05
MECP2-220ENST00000631210 RSF1Q96T23 1441 aaPredicted RBP15.34■□□□□ 0.05
MECP2-220ENST00000631210 PEG3Q9GZU2 1588 aa15.29■□□□□ 0.04
MECP2-220ENST00000631210 ATAD2BQ9ULI0 1458 aa15.27■□□□□ 0.03
MECP2-220ENST00000631210 WIZO95785 1651 aa15.24■□□□□ 0.03
MECP2-220ENST00000631210 NCAPD3P42695 1498 aa15.21■□□□□ 0.03
MECP2-220ENST00000631210 SMARCA2P51531 1590 aa15.21■□□□□ 0.03
MECP2-220ENST00000631210 HMGXB3Q12766 1538 aa15.15■□□□□ 0.02
MECP2-220ENST00000631210 BAZ1BQ9UIG0 1483 aaKnown RBP15.1■□□□□ 0.01
MECP2-220ENST00000631210 TOP2AP11388 1531 aaKnown RBP15.07■□□□□ 0
MECP2-220ENST00000631210 SUPT5HO00267 1087 aaKnown RBP15.06■□□□□ 0
MECP2-220ENST00000631210 CCDC88BA6NC98 1476 aa14.92□□□□□ -0.02
MECP2-220ENST00000631210 NESP48681 1621 aa14.78□□□□□ -0.04
MECP2-220ENST00000631210 CFTRP13569 1480 aa14.76□□□□□ -0.05
MECP2-220ENST00000631210 CADPSQ9ULU8 1353 aa14.76□□□□□ -0.05
MECP2-220ENST00000631210 LAMC3Q9Y6N6 1575 aa14.73□□□□□ -0.05
MECP2-220ENST00000631210 PRDM2Q13029 1718 aa14.64□□□□□ -0.07
MECP2-220ENST00000631210 KIF21AQ7Z4S6 1674 aa14.59□□□□□ -0.07
MECP2-220ENST00000631210 PDS5BQ9NTI5 1447 aa14.58□□□□□ -0.07
MECP2-220ENST00000631210 FANCD2Q9BXW9 1451 aa14.58□□□□□ -0.08
MECP2-220ENST00000631210 CEP164Q9UPV0 1460 aa14.51□□□□□ -0.09
MECP2-220ENST00000631210 THOC2Q8NI27 1593 aaKnown RBP14.49□□□□□ -0.09
MECP2-220ENST00000631210 ERCC6Q03468 1493 aa14.49□□□□□ -0.09
MECP2-220ENST00000631210 URB2Q14146 1524 aaKnown RBP14.47□□□□□ -0.09
MECP2-220ENST00000631210 ABCC8Q09428 1581 aa14.46□□□□□ -0.09
MECP2-220ENST00000631210 MRC2Q9UBG0 1479 aa14.45□□□□□ -0.1
MECP2-220ENST00000631210 WDR62O43379 1518 aa14.43□□□□□ -0.1
MECP2-220ENST00000631210 CUX1P39880 1505 aa14.43□□□□□ -0.1
MECP2-220ENST00000631210 TOPBP1Q92547 1522 aa14.41□□□□□ -0.1
MECP2-220ENST00000631210 DNMBPQ6XZF7 1577 aa14.4□□□□□ -0.1
MECP2-220ENST00000631210 SYNJ1O43426 1573 aa14.39□□□□□ -0.11
MECP2-220ENST00000631210 WRNQ14191 1432 aaPredicted RBP eCLIP14.39□□□□□ -0.11
MECP2-220ENST00000631210 BIVM-ERCC5R4GMW8 1640 aa14.37□□□□□ -0.11
MECP2-220ENST00000631210 TOP2BQ02880 1626 aa14.36□□□□□ -0.11
MECP2-220ENST00000631210 CUX2O14529 1486 aa14.32□□□□□ -0.12
MECP2-220ENST00000631210 POLA1P09884 1462 aaPredicted RBP14.31□□□□□ -0.12
MECP2-220ENST00000631210 FGD5Q6ZNL6 1462 aa14.31□□□□□ -0.12
MECP2-220ENST00000631210 CHIC1Q5VXU3 224 aa14.3□□□□□ -0.12
MECP2-220ENST00000631210 TARBP1Q13395 1621 aaKnown RBP14.26□□□□□ -0.13
MECP2-220ENST00000631210 RAD54L2Q9Y4B4 1467 aa14.25□□□□□ -0.13
MECP2-220ENST00000631210 SOGA1O94964 1423 aa14.22□□□□□ -0.13
MECP2-220ENST00000631210 IFT140Q96RY7 1462 aa14.21□□□□□ -0.13
MECP2-220ENST00000631210 WDR97A6NE52 1622 aa14.21□□□□□ -0.13
MECP2-220ENST00000631210 TRIM41Q8WV44 630 aa14.19□□□□□ -0.14
MECP2-220ENST00000631210 ABCA10Q8WWZ4 1543 aa14.19□□□□□ -0.14
MECP2-220ENST00000631210 ZNF608Q9ULD9 1512 aaPredicted RBP14.18□□□□□ -0.14
MECP2-220ENST00000631210 TDRD9Q8NDG6 1382 aaKnown RBP14.12□□□□□ -0.15
MECP2-220ENST00000631210 AQRO60306 1485 aaKnown RBP eCLIP14.12□□□□□ -0.15
MECP2-220ENST00000631210 ABCA5Q8WWZ7 1642 aa14.12□□□□□ -0.15
MECP2-220ENST00000631210 RUSC2Q8N2Y8 1516 aa14.11□□□□□ -0.15
MECP2-220ENST00000631210 EIF4G3O43432 1585 aaKnown RBP14.1□□□□□ -0.15
MECP2-220ENST00000631210 GAPVD1Q14C86 1478 aa14.06□□□□□ -0.16
MECP2-220ENST00000631210 KIF27Q86VH2 1401 aa14.04□□□□□ -0.16
MECP2-220ENST00000631210 PBRM1Q86U86 1689 aa14.02□□□□□ -0.16
MECP2-220ENST00000631210 IGF1RP08069 1367 aa14.02□□□□□ -0.17
MECP2-220ENST00000631210 GRIN2BQ13224 1484 aa14.01□□□□□ -0.17
MECP2-220ENST00000631210 ERICH3Q5RHP9 1530 aa14□□□□□ -0.17
MECP2-220ENST00000631210 SNAPC4Q5SXM2 1469 aa13.97□□□□□ -0.17
MECP2-220ENST00000631210 EEA1Q15075 1411 aa13.95□□□□□ -0.18
MECP2-220ENST00000631210 ADAMTS12P58397 1594 aa13.95□□□□□ -0.18
MECP2-220ENST00000631210 MAGI1Q96QZ7 1491 aaPredicted RBP13.94□□□□□ -0.18
MECP2-220ENST00000631210 PRXQ9BXM0 1461 aa13.92□□□□□ -0.18
MECP2-220ENST00000631210 FAM9AQ8IZU1 332 aaPredicted RBP13.91□□□□□ -0.18
MECP2-220ENST00000631210 CSRNP3Q8WYN3 585 aa13.91□□□□□ -0.18
MECP2-220ENST00000631210 CUL7Q14999 1698 aa13.91□□□□□ -0.18
MECP2-220ENST00000631210 FHAD1B1AJZ9 1412 aa13.9□□□□□ -0.18
MECP2-220ENST00000631210 SYNJ2O15056 1496 aa13.9□□□□□ -0.18
MECP2-220ENST00000631210 CARMIL1Q5VZK9 1371 aa13.89□□□□□ -0.19
MECP2-220ENST00000631210 CHD1O14646 1710 aa13.87□□□□□ -0.19
MECP2-220ENST00000631210 GRIN2AQ12879 1464 aa13.86□□□□□ -0.19
MECP2-220ENST00000631210 RAPGEF2Q9Y4G8 1499 aa13.84□□□□□ -0.19
MECP2-220ENST00000631210 KIF21BO75037 1637 aa13.83□□□□□ -0.2
MECP2-220ENST00000631210 CEP170Q5SW79 1584 aa13.81□□□□□ -0.2
MECP2-220ENST00000631210 CHMP7Q8WUX9 453 aaPredicted RBP13.81□□□□□ -0.2
MECP2-220ENST00000631210 NUP160Q12769 1436 aa13.81□□□□□ -0.2
MECP2-220ENST00000631210 FBLN2P98095 1184 aa13.78□□□□□ -0.2
MECP2-220ENST00000631210 CLASP1Q7Z460 1538 aa13.76□□□□□ -0.21
MECP2-220ENST00000631210 GOLGA3Q08378 1498 aa13.74□□□□□ -0.21
MECP2-220ENST00000631210 OSCARQ8IYS5 282 aa13.72□□□□□ -0.21
MECP2-220ENST00000631210 KIAA0586Q9BVV6 1533 aa13.71□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms