RNA–Protein interactions for RNA: ENST00000553617.5

TDP1-207, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 5

Gene TDP1, Length 876 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-207ENST00000553617 AEBP2Q6ZN18 517 aaPredicted RBP16.73■□□□□ 0.27
TDP1-207ENST00000553617 CHIC1Q5VXU3 224 aa15.77■□□□□ 0.12
TDP1-207ENST00000553617 SENP3Q9H4L4 574 aaPredicted RBP14.27□□□□□ -0.13
TDP1-207ENST00000553617 PHF23Q9BUL5 403 aaPredicted RBP14.07□□□□□ -0.16
TDP1-207ENST00000553617 FOXD1Q16676 465 aa13.32□□□□□ -0.28
TDP1-207ENST00000553617 PLPPR3Q6T4P5 718 aa12.6□□□□□ -0.39
TDP1-207ENST00000553617 MSH5O43196 834 aa12.5□□□□□ -0.41
TDP1-207ENST00000553617 POTEDQ86YR6 584 aa12.4□□□□□ -0.42
TDP1-207ENST00000553617 PIAS4Q8N2W9 510 aaPredicted RBP12.39□□□□□ -0.43
TDP1-207ENST00000553617 PPP6R1Q9UPN7 881 aa12.37□□□□□ -0.43
TDP1-207ENST00000553617 ADRA2BP18089 450 aa12.31□□□□□ -0.44
TDP1-207ENST00000553617 KCNA4P22459 653 aa11.5□□□□□ -0.57
TDP1-207ENST00000553617 MAPK8IP2Q13387 824 aaPredicted RBP11.35□□□□□ -0.59
TDP1-207ENST00000553617 DMRT2Q9Y5R5 561 aa11.31□□□□□ -0.6
TDP1-207ENST00000553617 EHMT2Q96KQ7 1210 aa11.25□□□□□ -0.61
TDP1-207ENST00000553617 SCAF1Q9H7N4 1312 aaKnown RBP11.25□□□□□ -0.61
TDP1-207ENST00000553617 PPP4R3CPQ6ZMV5 832 aa11.17□□□□□ -0.62
TDP1-207ENST00000553617 SLC4A1APQ9BWU0 796 aaKnown RBP11.01□□□□□ -0.65
TDP1-207ENST00000553617 NCBP3Q53F19 620 aaKnown RBP10.99□□□□□ -0.65
TDP1-207ENST00000553617 CSRNP3Q8WYN3 585 aa10.96□□□□□ -0.65
TDP1-207ENST00000553617 NPM3O75607 178 aaKnown RBP10.88□□□□□ -0.67
TDP1-207ENST00000553617 HOXD11P31277 338 aaPredicted RBP10.85□□□□□ -0.67
TDP1-207ENST00000553617 DCAF8L1A6NGE4 600 aa10.8□□□□□ -0.68
TDP1-207ENST00000553617 CACNB1Q02641 598 aaPredicted RBP10.79□□□□□ -0.68
TDP1-207ENST00000553617 CNKSR2Q8WXI2 1034 aa10.79□□□□□ -0.68
TDP1-207ENST00000553617 RNF216Q9NWF9 866 aaPredicted RBP10.73□□□□□ -0.69
TDP1-207ENST00000553617 RNF39Q9H2S5 420 aa10.67□□□□□ -0.7
TDP1-207ENST00000553617 ZBTB22O15209 634 aa10.63□□□□□ -0.71
TDP1-207ENST00000553617 DNAJC5BQ9UF47 199 aa10.57□□□□□ -0.72
TDP1-207ENST00000553617 C1QBPQ07021 282 aaKnown RBP10.5□□□□□ -0.73
TDP1-207ENST00000553617 FOXD4L1Q9NU39 408 aa10.43□□□□□ -0.74
TDP1-207ENST00000553617 GRWD1Q9BQ67 446 aaKnown RBP eCLIP10.32□□□□□ -0.76
TDP1-207ENST00000553617 SLC4A2P04920 1241 aa10.18□□□□□ -0.78
TDP1-207ENST00000553617 U3KPZ7 1027 aaPredicted RBP10.1□□□□□ -0.79
TDP1-207ENST00000553617 ATXN8OSP0DMR3 200 aa10.04□□□□□ -0.8
TDP1-207ENST00000553617 MYCNP04198 464 aaPredicted RBP10.02□□□□□ -0.81
TDP1-207ENST00000553617 SPINK5Q9NQ38 1064 aaPredicted RBP9.98□□□□□ -0.81
TDP1-207ENST00000553617 CAPN15O75808 1086 aa9.95□□□□□ -0.82
TDP1-207ENST00000553617 DSG3P32926 999 aa9.95□□□□□ -0.82
TDP1-207ENST00000553617 AMER1Q5JTC6 1135 aaPredicted RBP9.87□□□□□ -0.83
TDP1-207ENST00000553617 RTN4Q9NQC3 1192 aaKnown RBP9.86□□□□□ -0.83
TDP1-207ENST00000553617 FKBP8Q14318 412 aa9.83□□□□□ -0.84
TDP1-207ENST00000553617 ATF5Q9Y2D1 282 aaPredicted RBP9.8□□□□□ -0.84
TDP1-207ENST00000553617 APLP2Q06481 763 aa9.79□□□□□ -0.84
TDP1-207ENST00000553617 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP9.76□□□□□ -0.85
TDP1-207ENST00000553617 TRHP20396 242 aaPredicted RBP9.76□□□□□ -0.85
TDP1-207ENST00000553617 HNRNPUL2Q1KMD3 747 aaKnown RBP9.76□□□□□ -0.85
TDP1-207ENST00000553617 ZNF219Q9P2Y4 722 aaPredicted RBP9.76□□□□□ -0.85
TDP1-207ENST00000553617 SLC24A1O60721 1099 aa9.73□□□□□ -0.85
TDP1-207ENST00000553617 ABCB7O75027 752 aa9.72□□□□□ -0.85
TDP1-207ENST00000553617 SAMD1Q6SPF0 538 aaPredicted RBP9.71□□□□□ -0.86
TDP1-207ENST00000553617 POTEHQ6S545 545 aa9.69□□□□□ -0.86
TDP1-207ENST00000553617 POLA2Q14181 598 aa9.48□□□□□ -0.89
TDP1-207ENST00000553617 RBM42Q9BTD8 480 aaKnown RBP9.48□□□□□ -0.89
TDP1-207ENST00000553617 MKRN4PQ13434 485 aaPredicted RBP9.36□□□□□ -0.91
TDP1-207ENST00000553617 PROM2Q8N271 834 aa9.35□□□□□ -0.91
TDP1-207ENST00000553617 SPDYE4A6NLX3 237 aa9.34□□□□□ -0.91
TDP1-207ENST00000553617 CHRDL2Q6WN34 429 aa9.32□□□□□ -0.92
TDP1-207ENST00000553617 FBXO3Q9UK99 471 aa9.32□□□□□ -0.92
TDP1-207ENST00000553617 ZBTB12Q9Y330 459 aaPredicted RBP9.3□□□□□ -0.92
TDP1-207ENST00000553617 AKT1S1Q96B36 256 aa9.26□□□□□ -0.93
TDP1-207ENST00000553617 FBLN2P98095 1184 aa9.23□□□□□ -0.93
TDP1-207ENST00000553617 VASPP50552 380 aaPredicted RBP9.21□□□□□ -0.94
TDP1-207ENST00000553617 OSCARQ8IYS5 282 aa9.19□□□□□ -0.94
TDP1-207ENST00000553617 REM2Q8IYK8 340 aaPredicted RBP9.16□□□□□ -0.94
TDP1-207ENST00000553617 IFNLR1Q8IU57 520 aaPredicted RBP9.15□□□□□ -0.94
TDP1-207ENST00000553617 PLCB2Q00722 1185 aa9.1□□□□□ -0.95
TDP1-207ENST00000553617 PIP4P2Q8N4L2 257 aa9.08□□□□□ -0.96
TDP1-207ENST00000553617 PITPNM1O00562 1244 aa9.06□□□□□ -0.96
TDP1-207ENST00000553617 PKD2Q13563 968 aa9.05□□□□□ -0.96
TDP1-207ENST00000553617 SP7Q8TDD2 431 aaPredicted RBP9.03□□□□□ -0.96
TDP1-207ENST00000553617 FXR2P51116 673 aaKnown RBP eCLIP9.02□□□□□ -0.97
TDP1-207ENST00000553617 SPDYE2BA6NHP3 402 aa9.01□□□□□ -0.97
TDP1-207ENST00000553617 SPDYE6P0CI01 402 aa9.01□□□□□ -0.97
TDP1-207ENST00000553617 SPDYE2Q495Y8 402 aa9.01□□□□□ -0.97
TDP1-207ENST00000553617 HAX1O00165 279 aa8.93□□□□□ -0.98
TDP1-207ENST00000553617 DCAF8L2P0C7V8 631 aa8.93□□□□□ -0.98
TDP1-207ENST00000553617 HAP1P54257 671 aaPredicted RBP8.92□□□□□ -0.98
TDP1-207ENST00000553617 SPOCK2Q92563 424 aa8.92□□□□□ -0.98
TDP1-207ENST00000553617 SSUH2Q9Y2M2 353 aa8.92□□□□□ -0.98
TDP1-207ENST00000553617 ZNF692Q9BU19 519 aaPredicted RBP8.9□□□□□ -0.98
TDP1-207ENST00000553617 STAG3Q9UJ98 1225 aa8.9□□□□□ -0.98
TDP1-207ENST00000553617 SPDYE1Q8NFV5 336 aaPredicted RBP8.87□□□□□ -0.99
TDP1-207ENST00000553617 KLHL34Q8N239 644 aa8.86□□□□□ -0.99
TDP1-207ENST00000553617 ECM2O94769 699 aaPredicted RBP8.84□□□□□ -0.99
TDP1-207ENST00000553617 PABPN1Q86U42 306 aaKnown RBP eCLIP8.84□□□□□ -0.99
TDP1-207ENST00000553617 VSIG10Q8N0Z9 540 aa8.84□□□□□ -0.99
TDP1-207ENST00000553617 EVX2Q03828 476 aa8.83□□□□□ -1
TDP1-207ENST00000553617 BBXQ8WY36 941 aaPredicted RBP8.83□□□□□ -1
TDP1-207ENST00000553617 CLEC11AQ9Y240 323 aa8.83□□□□□ -1
TDP1-207ENST00000553617 NPM1P06748 294 aaKnown RBP eCLIP8.82□□□□□ -1
TDP1-207ENST00000553617 PRKAR2AP13861 404 aaKnown RBP8.82□□□□□ -1
TDP1-207ENST00000553617 PLCD3Q8N3E9 789 aa8.8□□□□□ -1
TDP1-207ENST00000553617 RGL2O15211 777 aa8.78□□□□□ -1
TDP1-207ENST00000553617 BCANQ96GW7 911 aa8.78□□□□□ -1
TDP1-207ENST00000553617 ZBTB4Q9P1Z0 1013 aaPredicted RBP8.77□□□□□ -1.01
TDP1-207ENST00000553617 MIER1Q8N108 512 aa8.75□□□□□ -1.01
TDP1-207ENST00000553617 C19orf67A6NJJ6 358 aa8.74□□□□□ -1.01
TDP1-207ENST00000553617 KDM2AQ9Y2K7 1162 aa8.74□□□□□ -1.01
TDP1-207ENST00000553617 PAXIP1Q6ZW49 1069 aaPredicted RBP8.73□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms