RNA–Protein interactions for RNA: ENST00000558815.5

RPL28-207, Transcript of ribosomal protein L28, humanhuman

TSL 2 BASIC

Gene RPL28, Length 616 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPL28-207ENST00000558815 NISCHQ9Y2I1 1504 aa37.5■■■■□ 3.59
RPL28-207ENST00000558815 CCDC180Q9P1Z9 1646 aa33.46■■■□□ 2.95
RPL28-207ENST00000558815 ABCC9O60706 1549 aa33.05■■■□□ 2.88
RPL28-207ENST00000558815 RB1CC1Q8TDY2 1594 aa31.63■■■□□ 2.65
RPL28-207ENST00000558815 DCAF8L2P0C7V8 631 aa31.56■■■□□ 2.64
RPL28-207ENST00000558815 NACADO15069 1562 aa31.49■■■□□ 2.63
RPL28-207ENST00000558815 ZCCHC6Q5VYS8 1495 aaKnown RBP31.19■■■□□ 2.58
RPL28-207ENST00000558815 MYO15BQ96JP2 1530 aa31.14■■■□□ 2.57
RPL28-207ENST00000558815 UNC13AQ9UPW8 1703 aa30.98■■■□□ 2.55
RPL28-207ENST00000558815 DCAF1Q9Y4B6 1507 aa30.94■■■□□ 2.54
RPL28-207ENST00000558815 PABPN1Q86U42 306 aaKnown RBP eCLIP30.83■■■□□ 2.53
RPL28-207ENST00000558815 BICRAQ9NZM4 1560 aa30.66■■■□□ 2.5
RPL28-207ENST00000558815 SCRIBQ14160 1630 aa30.61■■■□□ 2.49
RPL28-207ENST00000558815 DNAJC5BQ9UF47 199 aa30.48■■■□□ 2.47
RPL28-207ENST00000558815 SHROOM4Q9ULL8 1493 aa30.22■■■□□ 2.43
RPL28-207ENST00000558815 EIF4G1Q04637 1599 aaKnown RBP29.9■■■□□ 2.38
RPL28-207ENST00000558815 CC2D2AQ9P2K1 1620 aa29.85■■■□□ 2.37
RPL28-207ENST00000558815 CECR2Q9BXF3 1484 aa29.68■■■□□ 2.34
RPL28-207ENST00000558815 SMARCA4P51532 1647 aa29.2■■■□□ 2.26
RPL28-207ENST00000558815 BAZ1AQ9NRL2 1556 aaPredicted RBP29.09■■■□□ 2.25
RPL28-207ENST00000558815 ATAD2BQ9ULI0 1458 aa29.05■■■□□ 2.24
RPL28-207ENST00000558815 NCAPD3P42695 1498 aa29.03■■■□□ 2.24
RPL28-207ENST00000558815 SMARCA2P51531 1590 aa29.01■■■□□ 2.23
RPL28-207ENST00000558815 MROH2BQ7Z745 1585 aa28.93■■■□□ 2.22
RPL28-207ENST00000558815 HMGXB3Q12766 1538 aa28.89■■■□□ 2.22
RPL28-207ENST00000558815 BAZ1BQ9UIG0 1483 aaKnown RBP28.85■■■□□ 2.21
RPL28-207ENST00000558815 PEG3Q9GZU2 1588 aa28.83■■■□□ 2.21
RPL28-207ENST00000558815 WIZO95785 1651 aa28.66■■■□□ 2.18
RPL28-207ENST00000558815 NESP48681 1621 aa28.51■■■□□ 2.15
RPL28-207ENST00000558815 ERCC6Q03468 1493 aa28.5■■■□□ 2.15
RPL28-207ENST00000558815 RSF1Q96T23 1441 aaPredicted RBP28.47■■■□□ 2.15
RPL28-207ENST00000558815 LAMC3Q9Y6N6 1575 aa28.36■■■□□ 2.13
RPL28-207ENST00000558815 TOP2AP11388 1531 aaKnown RBP28.28■■■□□ 2.12
RPL28-207ENST00000558815 KIF21AQ7Z4S6 1674 aa28.21■■■□□ 2.11
RPL28-207ENST00000558815 CUX2O14529 1486 aa28.2■■■□□ 2.1
RPL28-207ENST00000558815 CADPSQ9ULU8 1353 aa28.19■■■□□ 2.1
RPL28-207ENST00000558815 PDS5BQ9NTI5 1447 aa28.16■■■□□ 2.1
RPL28-207ENST00000558815 THOC2Q8NI27 1593 aaKnown RBP28.11■■■□□ 2.09
RPL28-207ENST00000558815 CFTRP13569 1480 aa27.96■■■□□ 2.07
RPL28-207ENST00000558815 CCDC88BA6NC98 1476 aa27.95■■■□□ 2.06
RPL28-207ENST00000558815 FANCD2Q9BXW9 1451 aa27.92■■■□□ 2.06
RPL28-207ENST00000558815 CEP164Q9UPV0 1460 aa27.92■■■□□ 2.06
RPL28-207ENST00000558815 MRC2Q9UBG0 1479 aa27.91■■■□□ 2.06
RPL28-207ENST00000558815 PRDM2Q13029 1718 aa27.84■■■□□ 2.05
RPL28-207ENST00000558815 WDR62O43379 1518 aa27.82■■■□□ 2.04
RPL28-207ENST00000558815 SUPT5HO00267 1087 aaKnown RBP27.7■■■□□ 2.02
RPL28-207ENST00000558815 URB2Q14146 1524 aaKnown RBP27.66■■■□□ 2.02
RPL28-207ENST00000558815 DNAJC5Q9H3Z4 198 aa27.6■■■□□ 2.01
RPL28-207ENST00000558815 TOPBP1Q92547 1522 aa27.45■■□□□ 1.98
RPL28-207ENST00000558815 DNMBPQ6XZF7 1577 aa27.39■■□□□ 1.98
RPL28-207ENST00000558815 ABCC8Q09428 1581 aa27.38■■□□□ 1.97
RPL28-207ENST00000558815 IFT140Q96RY7 1462 aa27.31■■□□□ 1.96
RPL28-207ENST00000558815 ZNF608Q9ULD9 1512 aaPredicted RBP27.25■■□□□ 1.95
RPL28-207ENST00000558815 POLA1P09884 1462 aaPredicted RBP27.19■■□□□ 1.94
RPL28-207ENST00000558815 TARBP1Q13395 1621 aaKnown RBP27.16■■□□□ 1.94
RPL28-207ENST00000558815 EIF4G3O43432 1585 aaKnown RBP27.16■■□□□ 1.94
RPL28-207ENST00000558815 CUX1P39880 1505 aa27.16■■□□□ 1.94
RPL28-207ENST00000558815 FGD5Q6ZNL6 1462 aa27.12■■□□□ 1.93
RPL28-207ENST00000558815 RAD54L2Q9Y4B4 1467 aa27.12■■□□□ 1.93
RPL28-207ENST00000558815 SOGA1O94964 1423 aa27.07■■□□□ 1.92
RPL28-207ENST00000558815 AQRO60306 1485 aaKnown RBP eCLIP27.06■■□□□ 1.923e-8■■■■□ 26.2
RPL28-207ENST00000558815 OSCARQ8IYS5 282 aa26.99■■□□□ 1.91
RPL28-207ENST00000558815 TDRD9Q8NDG6 1382 aaKnown RBP26.97■■□□□ 1.91
RPL28-207ENST00000558815 WDR97A6NE52 1622 aa26.91■■□□□ 1.9
RPL28-207ENST00000558815 CHD1O14646 1710 aa26.9■■□□□ 1.9
RPL28-207ENST00000558815 WRNQ14191 1432 aaPredicted RBP eCLIP26.89■■□□□ 1.89
RPL28-207ENST00000558815 SYNJ1O43426 1573 aa26.87■■□□□ 1.89
RPL28-207ENST00000558815 BIVM-ERCC5R4GMW8 1640 aa26.87■■□□□ 1.89
RPL28-207ENST00000558815 TOP2BQ02880 1626 aa26.85■■□□□ 1.89
RPL28-207ENST00000558815 FBLN2P98095 1184 aa26.84■■□□□ 1.89
RPL28-207ENST00000558815 SNAPC4Q5SXM2 1469 aa26.82■■□□□ 1.88
RPL28-207ENST00000558815 PBRM1Q86U86 1689 aa26.8■■□□□ 1.88
RPL28-207ENST00000558815 ABCA10Q8WWZ4 1543 aa26.79■■□□□ 1.88
RPL28-207ENST00000558815 GRIN2BQ13224 1484 aa26.78■■□□□ 1.88
RPL28-207ENST00000558815 GAPVD1Q14C86 1478 aa26.76■■□□□ 1.87
RPL28-207ENST00000558815 TRIM41Q8WV44 630 aa26.74■■□□□ 1.87
RPL28-207ENST00000558815 ABCA5Q8WWZ7 1642 aa26.74■■□□□ 1.87
RPL28-207ENST00000558815 MAGI1Q96QZ7 1491 aaPredicted RBP26.72■■□□□ 1.87
RPL28-207ENST00000558815 CHMP7Q8WUX9 453 aaPredicted RBP26.67■■□□□ 1.86
RPL28-207ENST00000558815 RIMBP3CA6NJZ7 1639 aa26.67■■□□□ 1.86
RPL28-207ENST00000558815 RIMBP3BA6NNM3 1639 aa26.67■■□□□ 1.86
RPL28-207ENST00000558815 RIMBP3Q9UFD9 1639 aa26.67■■□□□ 1.86
RPL28-207ENST00000558815 SYNJ2O15056 1496 aa26.62■■□□□ 1.85
RPL28-207ENST00000558815 ARHGEF11O15085 1522 aa26.6■■□□□ 1.85
RPL28-207ENST00000558815 ADAMTS12P58397 1594 aa26.53■■□□□ 1.84
RPL28-207ENST00000558815 CLASP1Q7Z460 1538 aa26.51■■□□□ 1.83
RPL28-207ENST00000558815 ERICH3Q5RHP9 1530 aa26.47■■□□□ 1.83
RPL28-207ENST00000558815 GRIN2AQ12879 1464 aa26.45■■□□□ 1.82
RPL28-207ENST00000558815 FHAD1B1AJZ9 1412 aa26.42■■□□□ 1.82
RPL28-207ENST00000558815 CYB5RLQ6IPT4 315 aa26.39■■□□□ 1.82
RPL28-207ENST00000558815 ARAP1Q96P48 1450 aa26.37■■□□□ 1.81
RPL28-207ENST00000558815 CEP170Q5SW79 1584 aa26.36■■□□□ 1.81
RPL28-207ENST00000558815 KIF27Q86VH2 1401 aa26.33■■□□□ 1.81
RPL28-207ENST00000558815 NUP160Q12769 1436 aa26.3■■□□□ 1.8
RPL28-207ENST00000558815 CUL7Q14999 1698 aa26.22■■□□□ 1.79
RPL28-207ENST00000558815 IGF1RP08069 1367 aa26.21■■□□□ 1.79
RPL28-207ENST00000558815 ERCC6L2Q5T890 1561 aa26.19■■□□□ 1.78
RPL28-207ENST00000558815 SHROOM2Q13796 1616 aa26.16■■□□□ 1.78
RPL28-207ENST00000558815 RUSC2Q8N2Y8 1516 aa26.14■■□□□ 1.78
RPL28-207ENST00000558815 CARMIL1Q5VZK9 1371 aa26.09■■□□□ 1.77
Retrieved 100 of 20,778 RNA–protein pairs in 88.4 ms