Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 SYNJ2-207ENST00000638626 7332 ntTSL 1 (best) BASIC10.43□□□□□ -0.741e-7■■■■□ 22.7
YBX3P16989 TUBA1B-203ENST00000547476 584 ntTSL 416.95■□□□□ 0.37e-15■■■■□ 22.7
YBX3P16989 TUBA1B-205ENST00000549870 565 ntTSL 416.53■□□□□ 0.247e-15■■■■□ 22.7
YBX3P16989 TUBA1B-207ENST00000551324 840 ntTSL 213.75□□□□□ -0.217e-15■■■■□ 22.7
YBX3P16989 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC19.46■□□□□ 0.713e-8■■■■□ 22.7
YBX3P16989 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.493e-8■■■■□ 22.7
YBX3P16989 EIF2B3-203ENST00000372183 1457 ntTSL 1 (best) BASIC15.09■□□□□ 0.013e-8■■■■□ 22.7
YBX3P16989 PRKAR1B-201ENST00000360274 2007 ntAPPRIS P1 TSL 1 (best) BASIC31.58■■■□□ 2.651e-6■■■■□ 22.7
YBX3P16989 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.11e-6■■■■□ 22.7
YBX3P16989 PRKAR1B-206ENST00000417852 651 ntTSL 224.43■■□□□ 1.53e-6■■■■□ 22.7
YBX3P16989 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC22.05■■□□□ 1.121e-6■■■■□ 22.7
YBX3P16989 PRKAR1B-207ENST00000430040 1006 ntTSL 321.92■■□□□ 1.11e-6■■■■□ 22.7
YBX3P16989 PRKAR1B-205ENST00000414568 752 ntTSL 521.07■□□□□ 0.963e-6■■■■□ 22.7
YBX3P16989 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.921e-6■■■■□ 22.7
YBX3P16989 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.861e-6■■■■□ 22.7
YBX3P16989 SPPL3-201ENST00000353487 4148 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.126e-13■■■■□ 22.7
YBX3P16989 SPPL3-202ENST00000392495 2265 ntTSL 212□□□□□ -0.496e-13■■■■□ 22.7
YBX3P16989 SPPL3-209ENST00000545209 797 ntTSL 1 (best)7.8□□□□□ -1.166e-13■■■■□ 22.7
YBX3P16989 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC21.55■■□□□ 1.042e-7■■■■□ 22.7
YBX3P16989 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC20.64■□□□□ 0.92e-7■■■■□ 22.7
YBX3P16989 PLEKHA2-207ENST00000616834 3594 ntTSL 5 BASIC12.62□□□□□ -0.392e-7■■■■□ 22.7
YBX3P16989 PLEKHA2-209ENST00000617275 5582 ntAPPRIS P1 TSL 2 BASIC12.35□□□□□ -0.432e-7■■■■□ 22.7
YBX3P16989 CHD2-205ENST00000625662 5127 ntTSL 512.18□□□□□ -0.465e-8■■■■□ 22.7
YBX3P16989 CHD2-201ENST00000394196 9363 ntAPPRIS P1 TSL 5 BASIC8.83□□□□□ -15e-8■■■■□ 22.7
YBX3P16989 ARPC1B-218ENST00000484375 785 ntTSL 328.4■■■□□ 2.142e-9■■■■□ 22.7
YBX3P16989 PKN1-207ENST00000586557 899 ntTSL 528.16■■■□□ 2.17e-9■■■■□ 22.7
YBX3P16989 ARPC1B-204ENST00000418347 563 ntTSL 427.61■■■□□ 2.014e-9■■■■□ 22.7
YBX3P16989 ARPC1B-212ENST00000455009 580 ntTSL 325.96■■□□□ 1.753e-9■■■■□ 22.7
YBX3P16989 ARPC1B-219ENST00000484600 582 ntTSL 225.94■■□□□ 1.743e-9■■■■□ 22.7
YBX3P16989 ARPC1B-213ENST00000458033 561 ntTSL 225.73■■□□□ 1.713e-9■■■■□ 22.7
YBX3P16989 PKN1-212ENST00000590097 848 ntTSL 325.59■■□□□ 1.697e-9■■■■□ 22.7
YBX3P16989 ARPC1B-203ENST00000417330 559 ntTSL 225.51■■□□□ 1.673e-9■■■■□ 22.7
YBX3P16989 ARPC1B-207ENST00000431816 581 ntTSL 225.51■■□□□ 1.673e-9■■■■□ 22.7
YBX3P16989 ARPC1B-205ENST00000427217 545 ntTSL 325.51■■□□□ 1.673e-9■■■■□ 22.7
YBX3P16989 ARPC1B-221ENST00000493403 532 ntTSL 323.26■■□□□ 1.314e-9■■■■□ 22.7
YBX3P16989 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.23e-9■■■■□ 22.7
YBX3P16989 ARPC1B-202ENST00000414376 572 ntTSL 422.21■■□□□ 1.153e-9■■■■□ 22.7
YBX3P16989 ARPC1B-209ENST00000443222 669 ntTSL 220.66■□□□□ 0.93e-9■■■■□ 22.7
YBX3P16989 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.823e-9■■■■□ 22.7
YBX3P16989 PKN1-204ENST00000585839 3518 ntTSL 219.02■□□□□ 0.648e-8■■■■□ 22.7
YBX3P16989 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.68e-8■■■■□ 22.7
YBX3P16989 AC004922.1-202ENST00000441989 1702 ntTSL 218.5■□□□□ 0.554e-9■■■■□ 22.7
YBX3P16989 ARPC1B-208ENST00000432343 839 ntTSL 517.27■□□□□ 0.363e-9■■■■□ 22.7
YBX3P16989 ARPC1B-210ENST00000445924 727 ntTSL 516.68■□□□□ 0.263e-9■■■■□ 22.7
YBX3P16989 AC004922.1-201ENST00000638617 2430 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.113e-9■■■■□ 22.7
YBX3P16989 PKN1-202ENST00000342216 2960 ntTSL 2 BASIC15.14■□□□□ 0.018e-8■■■■□ 22.7
YBX3P16989 ARPC1B-216ENST00000474880 709 ntTSL 514.69□□□□□ -0.063e-9■■■■□ 22.7
YBX3P16989 PRRC1-204ENST00000512635 2726 ntTSL 1 (best) BASIC7.03□□□□□ -1.281e-7■■■■□ 22.6
YBX3P16989 PRRC1-202ENST00000442138 5504 ntTSL 1 (best) BASIC6.87□□□□□ -1.311e-7■■■■□ 22.6
YBX3P16989 PRRC1-201ENST00000296666 4699 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.451e-7■■■■□ 22.6
YBX3P16989 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.689e-8■■■■□ 22.6
YBX3P16989 CDK5RAP2-207ENST00000468989 577 ntTSL 410.21□□□□□ -0.771e-13■■■■□ 22.6
YBX3P16989 ENDOD1-201ENST00000278505 4687 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.023e-6■■■■□ 22.6
YBX3P16989 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.149e-7■■■■□ 22.6
YBX3P16989 ZNF331-211ENST00000509047 670 ntTSL 320.26■□□□□ 0.839e-7■■■■□ 22.6
YBX3P16989 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.799e-7■■■■□ 22.6
YBX3P16989 ZNF331-221ENST00000514022 913 ntTSL 219.53■□□□□ 0.729e-7■■■■□ 22.6
YBX3P16989 ZNF331-215ENST00000511567 540 ntTSL 418■□□□□ 0.479e-7■■■■□ 22.6
YBX3P16989 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.439e-7■■■■□ 22.6
YBX3P16989 ZNF331-209ENST00000505426 688 ntTSL 217.47■□□□□ 0.399e-7■■■■□ 22.6
YBX3P16989 ZNF331-207ENST00000504493 641 ntTSL 1 (best)17■□□□□ 0.319e-7■■■■□ 22.6
YBX3P16989 ZNF331-218ENST00000513265 739 ntTSL 3 BASIC15.63■□□□□ 0.099e-7■■■■□ 22.6
YBX3P16989 ZNF331-210ENST00000505949 761 ntTSL 515.63■□□□□ 0.099e-7■■■■□ 22.6
YBX3P16989 ZNF331-213ENST00000509585 562 ntTSL 515.57■□□□□ 0.089e-7■■■■□ 22.6
YBX3P16989 ZNF331-204ENST00000502248 670 ntTSL 1 (best)14.59□□□□□ -0.079e-7■■■■□ 22.6
YBX3P16989 ZNF331-220ENST00000513999 1890 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.219e-7■■■■□ 22.6
YBX3P16989 ZNF331-201ENST00000253144 5042 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.49e-7■■■■□ 22.6
YBX3P16989 ZNF331-222ENST00000514374 574 ntTSL 411.45□□□□□ -0.589e-7■■■■□ 22.6
YBX3P16989 ZNF331-205ENST00000502616 573 ntTSL 1 (best)10.34□□□□□ -0.759e-7■■■■□ 22.6
YBX3P16989 ZNF331-216ENST00000511593 1985 ntAPPRIS P1 TSL 5 BASIC9.23□□□□□ -0.939e-7■■■■□ 22.6
YBX3P16989 ZNF331-203ENST00000449416 3817 ntAPPRIS P1 TSL 5 BASIC7.67□□□□□ -1.189e-7■■■■□ 22.6
YBX3P16989 COPS3-217ENST00000583160 365 ntTSL 57.09□□□□□ -1.277e-7■■■■□ 22.5
YBX3P16989 YIPF3-204ENST00000455768 843 ntTSL 527.9■■■□□ 2.062e-8■■■■□ 22.5
YBX3P16989 YIPF3-208ENST00000490447 1321 ntTSL 224.38■■□□□ 1.492e-8■■■■□ 22.5
YBX3P16989 YIPF3-205ENST00000460547 1674 ntTSL 1 (best)20.32■□□□□ 0.842e-8■■■■□ 22.5
YBX3P16989 YIPF3-212ENST00000503972 933 ntTSL 518.75■□□□□ 0.592e-8■■■■□ 22.5
YBX3P16989 YIPF3-214ENST00000510102 1639 ntTSL 518.73■□□□□ 0.592e-8■■■■□ 22.5
YBX3P16989 YIPF3-202ENST00000372422 1576 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.482e-8■■■■□ 22.5
YBX3P16989 YIPF3-213ENST00000506469 1444 ntTSL 5 BASIC17.43■□□□□ 0.382e-8■■■■□ 22.5
YBX3P16989 YIPF3-217ENST00000514627 854 ntTSL 317.04■□□□□ 0.322e-8■■■■□ 22.5
YBX3P16989 YIPF3-203ENST00000416380 1005 ntTSL 516.22■□□□□ 0.192e-8■■■■□ 22.5
YBX3P16989 YIPF3-216ENST00000512713 306 ntTSL 212.32□□□□□ -0.442e-8■■■■□ 22.5
YBX3P16989 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.092e-7■■■■□ 22.5
YBX3P16989 LRP5-206ENST00000529993 5103 ntTSL 1 (best)15.37■□□□□ 0.052e-7■■■■□ 22.5
YBX3P16989 PRPF38B-203ENST00000370025 3693 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.661e-6■■■■□ 22.5
YBX3P16989 PRPF38B-201ENST00000370021 3728 ntTSL 1 (best) BASIC10.46□□□□□ -0.741e-6■■■■□ 22.5
YBX3P16989 PRPF38B-205ENST00000485810 1352 ntTSL 25.65□□□□□ -1.511e-6■■■■□ 22.5
YBX3P16989 GNAI2-212ENST00000492383 989 ntTSL 226.1■■□□□ 1.771e-7■■■■□ 22.5
YBX3P16989 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.853e-6■■■■□ 22.5
YBX3P16989 ORC5-202ENST00000422497 2043 ntTSL 218.66■□□□□ 0.583e-6■■■■□ 22.5
YBX3P16989 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.223e-7■■■■□ 22.4
YBX3P16989 ABCC1-204ENST00000572882 4565 ntTSL 1 (best)10.14□□□□□ -0.795e-9■■■■□ 22.4
YBX3P16989 SRSF2-206ENST00000582449 1518 ntTSL 226.28■■□□□ 1.87e-9■■■■□ 22.4
YBX3P16989 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.137e-9■■■■□ 22.4
YBX3P16989 SRSF2-204ENST00000452355 1357 ntTSL 520.97■□□□□ 0.957e-9■■■■□ 22.4
YBX3P16989 SRSF2-208ENST00000585202 1359 ntTSL 319.57■□□□□ 0.727e-9■■■■□ 22.4
YBX3P16989 SRSF2-203ENST00000392485 2885 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.027e-9■■■■□ 22.4
YBX3P16989 SRSF2-210ENST00000589919 595 ntTSL 29.51□□□□□ -0.897e-9■■■■□ 22.4
YBX3P16989 SRSF2-209ENST00000586778 1001 ntTSL 28.5□□□□□ -1.057e-9■■■■□ 22.4
YBX3P16989 HNRNPL-209ENST00000600741 624 ntTSL 218■□□□□ 0.473e-17■■■■□ 22.4
Retrieved 100 of 29,075 protein–RNA pairs in 709.1 ms