RNA–Protein interactions for RNA: ENST00000512713.5

YIPF3-216, Transcript of Yip1 domain family member 3, humanhuman

TSL 2

Gene YIPF3, Length 306 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YIPF3-216ENST00000512713 NISCHQ9Y2I1 1504 aa22.52■■□□□ 1.2
YIPF3-216ENST00000512713 ABCC9O60706 1549 aa20.05■□□□□ 0.8
YIPF3-216ENST00000512713 CCDC180Q9P1Z9 1646 aa20.01■□□□□ 0.79
YIPF3-216ENST00000512713 DCAF8L2P0C7V8 631 aa19.15■□□□□ 0.66
YIPF3-216ENST00000512713 RB1CC1Q8TDY2 1594 aa19.1■□□□□ 0.65
YIPF3-216ENST00000512713 NACADO15069 1562 aa19.02■□□□□ 0.63
YIPF3-216ENST00000512713 MYO15BQ96JP2 1530 aa18.81■□□□□ 0.6
YIPF3-216ENST00000512713 PABPN1Q86U42 306 aaKnown RBP eCLIP18.78■□□□□ 0.6
YIPF3-216ENST00000512713 DNAJC5BQ9UF47 199 aa18.72■□□□□ 0.59
YIPF3-216ENST00000512713 ZCCHC6Q5VYS8 1495 aaKnown RBP18.67■□□□□ 0.58
YIPF3-216ENST00000512713 DCAF1Q9Y4B6 1507 aa18.61■□□□□ 0.57
YIPF3-216ENST00000512713 BICRAQ9NZM4 1560 aa18.46■□□□□ 0.55
YIPF3-216ENST00000512713 UNC13AQ9UPW8 1703 aa18.39■□□□□ 0.53
YIPF3-216ENST00000512713 SHROOM4Q9ULL8 1493 aa18.34■□□□□ 0.53
YIPF3-216ENST00000512713 SCRIBQ14160 1630 aa18.31■□□□□ 0.52
YIPF3-216ENST00000512713 CECR2Q9BXF3 1484 aa18.07■□□□□ 0.48
YIPF3-216ENST00000512713 EIF4G1Q04637 1599 aaKnown RBP18.04■□□□□ 0.48
YIPF3-216ENST00000512713 CC2D2AQ9P2K1 1620 aa18.02■□□□□ 0.48
YIPF3-216ENST00000512713 NCAPD3P42695 1498 aa17.61■□□□□ 0.41
YIPF3-216ENST00000512713 ATAD2BQ9ULI0 1458 aa17.55■□□□□ 0.4
YIPF3-216ENST00000512713 SMARCA2P51531 1590 aa17.49■□□□□ 0.39
YIPF3-216ENST00000512713 BAZ1AQ9NRL2 1556 aaPredicted RBP17.48■□□□□ 0.39
YIPF3-216ENST00000512713 SMARCA4P51532 1647 aa17.47■□□□□ 0.39
YIPF3-216ENST00000512713 HMGXB3Q12766 1538 aa17.41■□□□□ 0.38
YIPF3-216ENST00000512713 BAZ1BQ9UIG0 1483 aaKnown RBP17.4■□□□□ 0.38
YIPF3-216ENST00000512713 ERCC6Q03468 1493 aa17.35■□□□□ 0.37
YIPF3-216ENST00000512713 MROH2BQ7Z745 1585 aa17.34■□□□□ 0.37
YIPF3-216ENST00000512713 PEG3Q9GZU2 1588 aa17.32■□□□□ 0.36
YIPF3-216ENST00000512713 CUX2O14529 1486 aa17.23■□□□□ 0.35
YIPF3-216ENST00000512713 NESP48681 1621 aa17.22■□□□□ 0.35
YIPF3-216ENST00000512713 DNAJC5Q9H3Z4 198 aa17.15■□□□□ 0.34
YIPF3-216ENST00000512713 PDS5BQ9NTI5 1447 aa17.13■□□□□ 0.33
YIPF3-216ENST00000512713 CADPSQ9ULU8 1353 aa17.12■□□□□ 0.33
YIPF3-216ENST00000512713 LAMC3Q9Y6N6 1575 aa17.11■□□□□ 0.33
YIPF3-216ENST00000512713 RSF1Q96T23 1441 aaPredicted RBP17.11■□□□□ 0.33
YIPF3-216ENST00000512713 WIZO95785 1651 aa17.06■□□□□ 0.32
YIPF3-216ENST00000512713 TOP2AP11388 1531 aaKnown RBP16.93■□□□□ 0.3
YIPF3-216ENST00000512713 THOC2Q8NI27 1593 aaKnown RBP16.92■□□□□ 0.3
YIPF3-216ENST00000512713 MRC2Q9UBG0 1479 aa16.91■□□□□ 0.3
YIPF3-216ENST00000512713 CFTRP13569 1480 aa16.9■□□□□ 0.3
YIPF3-216ENST00000512713 FANCD2Q9BXW9 1451 aa16.88■□□□□ 0.29
YIPF3-216ENST00000512713 CEP164Q9UPV0 1460 aa16.87■□□□□ 0.29
YIPF3-216ENST00000512713 KIF21AQ7Z4S6 1674 aa16.85■□□□□ 0.29
YIPF3-216ENST00000512713 WDR62O43379 1518 aa16.8■□□□□ 0.28
YIPF3-216ENST00000512713 CCDC88BA6NC98 1476 aa16.79■□□□□ 0.28
YIPF3-216ENST00000512713 URB2Q14146 1524 aaKnown RBP16.68■□□□□ 0.26
YIPF3-216ENST00000512713 OSCARQ8IYS5 282 aa16.59■□□□□ 0.25
YIPF3-216ENST00000512713 ABCC8Q09428 1581 aa16.57■□□□□ 0.24
YIPF3-216ENST00000512713 SUPT5HO00267 1087 aaKnown RBP16.56■□□□□ 0.24
YIPF3-216ENST00000512713 IFT140Q96RY7 1462 aa16.55■□□□□ 0.24
YIPF3-216ENST00000512713 TOPBP1Q92547 1522 aa16.54■□□□□ 0.24
YIPF3-216ENST00000512713 ZNF608Q9ULD9 1512 aaPredicted RBP16.47■□□□□ 0.23
YIPF3-216ENST00000512713 TRIM41Q8WV44 630 aa16.47■□□□□ 0.23
YIPF3-216ENST00000512713 DNMBPQ6XZF7 1577 aa16.46■□□□□ 0.23
YIPF3-216ENST00000512713 PRDM2Q13029 1718 aa16.45■□□□□ 0.22
YIPF3-216ENST00000512713 SOGA1O94964 1423 aa16.39■□□□□ 0.21
YIPF3-216ENST00000512713 AQRO60306 1485 aaKnown RBP eCLIP16.39■□□□□ 0.217e-6■■■□□ 17.6
YIPF3-216ENST00000512713 POLA1P09884 1462 aaPredicted RBP16.38■□□□□ 0.21
YIPF3-216ENST00000512713 FBLN2P98095 1184 aa16.36■□□□□ 0.21
YIPF3-216ENST00000512713 TDRD9Q8NDG6 1382 aaKnown RBP16.35■□□□□ 0.21
YIPF3-216ENST00000512713 RAD54L2Q9Y4B4 1467 aa16.34■□□□□ 0.21
YIPF3-216ENST00000512713 TARBP1Q13395 1621 aaKnown RBP16.3■□□□□ 0.2
YIPF3-216ENST00000512713 FGD5Q6ZNL6 1462 aa16.3■□□□□ 0.2
YIPF3-216ENST00000512713 EIF4G3O43432 1585 aaKnown RBP16.3■□□□□ 0.2
YIPF3-216ENST00000512713 CUX1P39880 1505 aa16.28■□□□□ 0.2
YIPF3-216ENST00000512713 CHMP7Q8WUX9 453 aaPredicted RBP16.26■□□□□ 0.19
YIPF3-216ENST00000512713 GRIN2BQ13224 1484 aa16.21■□□□□ 0.19
YIPF3-216ENST00000512713 WRNQ14191 1432 aaPredicted RBP eCLIP16.19■□□□□ 0.18
YIPF3-216ENST00000512713 SNAPC4Q5SXM2 1469 aa16.18■□□□□ 0.18
YIPF3-216ENST00000512713 CYB5RLQ6IPT4 315 aa16.18■□□□□ 0.18
YIPF3-216ENST00000512713 WDR97A6NE52 1622 aa16.18■□□□□ 0.18
YIPF3-216ENST00000512713 ARHGEF11O15085 1522 aa16.17■□□□□ 0.18
YIPF3-216ENST00000512713 MAGI1Q96QZ7 1491 aaPredicted RBP16.16■□□□□ 0.18
YIPF3-216ENST00000512713 GAPVD1Q14C86 1478 aa16.16■□□□□ 0.18
YIPF3-216ENST00000512713 ABCA10Q8WWZ4 1543 aa16.14■□□□□ 0.17
YIPF3-216ENST00000512713 RIMBP3CA6NJZ7 1639 aa16.12■□□□□ 0.17
YIPF3-216ENST00000512713 RIMBP3BA6NNM3 1639 aa16.12■□□□□ 0.17
YIPF3-216ENST00000512713 RIMBP3Q9UFD9 1639 aa16.12■□□□□ 0.17
YIPF3-216ENST00000512713 SYNJ2O15056 1496 aa16.12■□□□□ 0.17
YIPF3-216ENST00000512713 CHD1O14646 1710 aa16.05■□□□□ 0.16
YIPF3-216ENST00000512713 SYNJ1O43426 1573 aa16.04■□□□□ 0.16
YIPF3-216ENST00000512713 TOP2BQ02880 1626 aa16.04■□□□□ 0.16
YIPF3-216ENST00000512713 ARAP1Q96P48 1450 aa16.01■□□□□ 0.15
YIPF3-216ENST00000512713 CLASP1Q7Z460 1538 aa16■□□□□ 0.15
YIPF3-216ENST00000512713 ABCA5Q8WWZ7 1642 aa15.99■□□□□ 0.15
YIPF3-216ENST00000512713 TRHP20396 242 aaPredicted RBP15.99■□□□□ 0.15
YIPF3-216ENST00000512713 FHAD1B1AJZ9 1412 aa15.98■□□□□ 0.15
YIPF3-216ENST00000512713 BIVM-ERCC5R4GMW8 1640 aa15.97■□□□□ 0.15
YIPF3-216ENST00000512713 GRIN2AQ12879 1464 aa15.97■□□□□ 0.15
YIPF3-216ENST00000512713 ERICH3Q5RHP9 1530 aa15.92■□□□□ 0.14
YIPF3-216ENST00000512713 PBRM1Q86U86 1689 aa15.92■□□□□ 0.14
YIPF3-216ENST00000512713 NUP160Q12769 1436 aa15.9■□□□□ 0.14
YIPF3-216ENST00000512713 ADAMTS12P58397 1594 aa15.89■□□□□ 0.13
YIPF3-216ENST00000512713 KIF27Q86VH2 1401 aa15.86■□□□□ 0.13
YIPF3-216ENST00000512713 JPH4Q96JJ6 628 aa15.85■□□□□ 0.13
YIPF3-216ENST00000512713 IGF1RP08069 1367 aa15.85■□□□□ 0.13
YIPF3-216ENST00000512713 CEP170Q5SW79 1584 aa15.83■□□□□ 0.12
YIPF3-216ENST00000512713 PRG4Q92954 1404 aaPredicted RBP15.8■□□□□ 0.12
YIPF3-216ENST00000512713 ERCC6L2Q5T890 1561 aa15.74■□□□□ 0.11
YIPF3-216ENST00000512713 CARMIL1Q5VZK9 1371 aa15.74■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms