RNA–Protein interactions for RNA: ENST00000342216.8

PKN1-202, Transcript of protein kinase N1, humanhuman

TSL 2 BASIC

Gene PKN1, Length 2,960 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PKN1-202ENST00000342216 NISCHQ9Y2I1 1504 aa27.45■■□□□ 1.98
PKN1-202ENST00000342216 HRCP23327 699 aa25.67■■□□□ 1.7
PKN1-202ENST00000342216 PPARGC1BQ86YN6 1023 aaKnown RBP25.42■■□□□ 1.66
PKN1-202ENST00000342216 PELP1Q8IZL8 1130 aaKnown RBP25.22■■□□□ 1.63
PKN1-202ENST00000342216 PCGF6Q9BYE7 350 aa25.12■■□□□ 1.61
PKN1-202ENST00000342216 SUPT5HO00267 1087 aaKnown RBP24.73■■□□□ 1.55
PKN1-202ENST00000342216 SHROOM4Q9ULL8 1493 aa24.68■■□□□ 1.54
PKN1-202ENST00000342216 SCAF1Q9H7N4 1312 aaKnown RBP24.66■■□□□ 1.54
PKN1-202ENST00000342216 MYO15BQ96JP2 1530 aa24.63■■□□□ 1.53
PKN1-202ENST00000342216 CHIC1Q5VXU3 224 aa24.28■■□□□ 1.48
PKN1-202ENST00000342216 MYT1Q01538 1121 aa24.26■■□□□ 1.47
PKN1-202ENST00000342216 LOC105371045A0A1W2PR82 267 aa23.97■■□□□ 1.43
PKN1-202ENST00000342216 TRIM26Q12899 539 aaPredicted RBP23.95■■□□□ 1.43
PKN1-202ENST00000342216 DCAF1Q9Y4B6 1507 aa23.93■■□□□ 1.42
PKN1-202ENST00000342216 NEUROD1Q13562 356 aa23.84■■□□□ 1.41
PKN1-202ENST00000342216 ACIN1Q9UKV3 1341 aaKnown RBP23.81■■□□□ 1.4
PKN1-202ENST00000342216 ZEB1P37275 1124 aaPredicted RBP23.77■■□□□ 1.4
PKN1-202ENST00000342216 GTF3C3Q9Y5Q9 886 aa23.76■■□□□ 1.39
PKN1-202ENST00000342216 CCDC180Q9P1Z9 1646 aa23.72■■□□□ 1.39
PKN1-202ENST00000342216 CENPBP07199 599 aaPredicted RBP23.39■■□□□ 1.34
PKN1-202ENST00000342216 DIEXFQ68CQ4 756 aaKnown RBP23.21■■□□□ 1.31
PKN1-202ENST00000342216 DCAF8L2P0C7V8 631 aa23.17■■□□□ 1.3
PKN1-202ENST00000342216 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.13■■□□□ 1.29
PKN1-202ENST00000342216 YTHDC1Q96MU7 727 aaKnown RBP23.13■■□□□ 1.29
PKN1-202ENST00000342216 ZCCHC6Q5VYS8 1495 aaKnown RBP23.1■■□□□ 1.29
PKN1-202ENST00000342216 EHMT2Q96KQ7 1210 aa23.1■■□□□ 1.29
PKN1-202ENST00000342216 BCL11AQ9H165 835 aa23.04■■□□□ 1.28
PKN1-202ENST00000342216 CCER1Q8TC90 406 aaPredicted RBP23.02■■□□□ 1.28
PKN1-202ENST00000342216 FAM9AQ8IZU1 332 aaPredicted RBP22.96■■□□□ 1.27
PKN1-202ENST00000342216 TTBK1Q5TCY1 1321 aaPredicted RBP22.8■■□□□ 1.24
PKN1-202ENST00000342216 TRIM41Q8WV44 630 aa22.69■■□□□ 1.22
PKN1-202ENST00000342216 ANP32EQ9BTT0 268 aa22.68■■□□□ 1.22
PKN1-202ENST00000342216 MIER1Q8N108 512 aa22.62■■□□□ 1.21
PKN1-202ENST00000342216 CSRNP3Q8WYN3 585 aa22.59■■□□□ 1.21
PKN1-202ENST00000342216 ZNF316A6NFI3 1004 aaPredicted RBP22.57■■□□□ 1.2
PKN1-202ENST00000342216 TSHZ2Q9NRE2 1034 aa22.47■■□□□ 1.19
PKN1-202ENST00000342216 PRKCSHP14314 528 aaPredicted RBP22.43■■□□□ 1.18
PKN1-202ENST00000342216 SUPT16HQ9Y5B9 1047 aaKnown RBP22.43■■□□□ 1.18
PKN1-202ENST00000342216 ABCC9O60706 1549 aa22.34■■□□□ 1.17
PKN1-202ENST00000342216 BCANQ96GW7 911 aa22.14■■□□□ 1.13
PKN1-202ENST00000342216 SCRIBQ14160 1630 aa22.07■■□□□ 1.12
PKN1-202ENST00000342216 CLSPNQ9HAW4 1339 aa22.01■■□□□ 1.11
PKN1-202ENST00000342216 RB1CC1Q8TDY2 1594 aa21.95■■□□□ 1.1
PKN1-202ENST00000342216 HNRNPUL2Q1KMD3 747 aaKnown RBP21.93■■□□□ 1.1
PKN1-202ENST00000342216 RBM19Q9Y4C8 960 aaKnown RBP21.89■■□□□ 1.09
PKN1-202ENST00000342216 RSF1Q96T23 1441 aaPredicted RBP21.87■■□□□ 1.09
PKN1-202ENST00000342216 NACADO15069 1562 aa21.83■■□□□ 1.09
PKN1-202ENST00000342216 FKBP8Q14318 412 aa21.81■■□□□ 1.08
PKN1-202ENST00000342216 MSH5O43196 834 aa21.79■■□□□ 1.08
PKN1-202ENST00000342216 KCNH8Q96L42 1107 aa21.77■■□□□ 1.08
PKN1-202ENST00000342216 ITGAEP38570 1179 aa21.77■■□□□ 1.08
PKN1-202ENST00000342216 WRNQ14191 1432 aaPredicted RBP eCLIP21.68■■□□□ 1.068e-8■■■■■ 37.6
PKN1-202ENST00000342216 CEP162Q5TB80 1403 aa21.67■■□□□ 1.06
PKN1-202ENST00000342216 ANO8Q9HCE9 1232 aaPredicted RBP21.67■■□□□ 1.06
PKN1-202ENST00000342216 ERICH6Q7L0X2 663 aa21.65■■□□□ 1.06
PKN1-202ENST00000342216 CECR2Q9BXF3 1484 aa21.54■■□□□ 1.04
PKN1-202ENST00000342216 DEKP35659 375 aaKnown RBP21.51■■□□□ 1.03
PKN1-202ENST00000342216 UBTFP17480 764 aaKnown RBP21.51■■□□□ 1.03
PKN1-202ENST00000342216 NEFLP07196 543 aa21.51■■□□□ 1.03
PKN1-202ENST00000342216 SALL2Q9Y467 1007 aaPredicted RBP21.41■■□□□ 1.02
PKN1-202ENST00000342216 CCDC136Q96JN2 1154 aa21.4■■□□□ 1.02
PKN1-202ENST00000342216 APLP2Q06481 763 aa21.39■■□□□ 1.02
PKN1-202ENST00000342216 TRIM52Q96A61 297 aa21.39■■□□□ 1.01
PKN1-202ENST00000342216 MROH2BQ7Z745 1585 aa21.37■■□□□ 1.01
PKN1-202ENST00000342216 TNIKQ9UKE5 1360 aa21.36■■□□□ 1.01
PKN1-202ENST00000342216 PABPN1Q86U42 306 aaKnown RBP eCLIP21.34■■□□□ 1.01
PKN1-202ENST00000342216 FANCIQ9NVI1 1328 aa21.33■■□□□ 1.01
PKN1-202ENST00000342216 ABCC8Q09428 1581 aa21.33■■□□□ 1.01
PKN1-202ENST00000342216 CCDC88BA6NC98 1476 aa21.31■■□□□ 1
PKN1-202ENST00000342216 SOGA1O94964 1423 aa21.31■■□□□ 1
PKN1-202ENST00000342216 UNC13AQ9UPW8 1703 aa21.31■■□□□ 1
PKN1-202ENST00000342216 IRX6P78412 446 aaPredicted RBP21.3■■□□□ 1
PKN1-202ENST00000342216 NBR1Q14596 966 aa21.3■■□□□ 1
PKN1-202ENST00000342216 DHX57Q6P158 1386 aaKnown RBP21.28■■□□□ 1
PKN1-202ENST00000342216 DDX10Q13206 875 aaKnown RBP21.24■□□□□ 0.99
PKN1-202ENST00000342216 WIZO95785 1651 aa21.24■□□□□ 0.99
PKN1-202ENST00000342216 CDK11AQ9UQ88 783 aaPredicted RBP21.24■□□□□ 0.99
PKN1-202ENST00000342216 RANGAP1P46060 587 aaPredicted RBP21.23■□□□□ 0.99
PKN1-202ENST00000342216 RTN4Q9NQC3 1192 aaKnown RBP21.21■□□□□ 0.99
PKN1-202ENST00000342216 RUSC2Q8N2Y8 1516 aa21.2■□□□□ 0.98
PKN1-202ENST00000342216 ZBTB4Q9P1Z0 1013 aaPredicted RBP21.2■□□□□ 0.98
PKN1-202ENST00000342216 MYT1LQ9UL68 1186 aa21.18■□□□□ 0.98
PKN1-202ENST00000342216 IL27Q8NEV9 243 aa21.13■□□□□ 0.97
PKN1-202ENST00000342216 HIRIP3Q9BW71 556 aaPredicted RBP21.09■□□□□ 0.97
PKN1-202ENST00000342216 BICRAQ9NZM4 1560 aa21.08■□□□□ 0.97
PKN1-202ENST00000342216 BAZ1AQ9NRL2 1556 aaPredicted RBP21.08■□□□□ 0.97
PKN1-202ENST00000342216 PAK3O75914 559 aaPredicted RBP21.07■□□□□ 0.96
PKN1-202ENST00000342216 EIF4G1Q04637 1599 aaKnown RBP21.05■□□□□ 0.96
PKN1-202ENST00000342216 GOLGA3Q08378 1498 aa21.03■□□□□ 0.96
PKN1-202ENST00000342216 NOP58Q9Y2X3 529 aaKnown RBP21.01■□□□□ 0.95
PKN1-202ENST00000342216 CLIP1P30622 1438 aa21.01■□□□□ 0.95
PKN1-202ENST00000342216 SMARCA4P51532 1647 aa20.99■□□□□ 0.95
PKN1-202ENST00000342216 ERICH6BQ5W0A0 696 aa20.98■□□□□ 0.95
PKN1-202ENST00000342216 VPS8Q8N3P4 1428 aa20.94■□□□□ 0.94
PKN1-202ENST00000342216 ANP32CO43423 234 aa20.93■□□□□ 0.94
PKN1-202ENST00000342216 UBE2Q2Q8WVN8 375 aa20.93■□□□□ 0.94
PKN1-202ENST00000342216 PPP1R15AO75807 674 aaPredicted RBP20.91■□□□□ 0.94
PKN1-202ENST00000342216 HNRNPUQ00839 825 aaKnown RBP eCLIP20.91■□□□□ 0.94
PKN1-202ENST00000342216 B4GALNT3Q6L9W6 998 aa20.91■□□□□ 0.94
PKN1-202ENST00000342216 RTL5Q5HYW3 569 aaPredicted RBP20.9■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 90.8 ms