RNA–Protein interactions for RNA: ENST00000585839.5

PKN1-204, Transcript of protein kinase N1, humanhuman

TSL 2

Gene PKN1, Length 3,518 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PKN1-204ENST00000585839 NISCHQ9Y2I1 1504 aa36.69■■■■□ 3.46
PKN1-204ENST00000585839 SHROOM4Q9ULL8 1493 aa33.29■■■□□ 2.92
PKN1-204ENST00000585839 DCAF8L2P0C7V8 631 aa32.95■■■□□ 2.87
PKN1-204ENST00000585839 SUPT5HO00267 1087 aaKnown RBP32.8■■■□□ 2.84
PKN1-204ENST00000585839 EHMT2Q96KQ7 1210 aa31.06■■■□□ 2.56
PKN1-204ENST00000585839 CHIC1Q5VXU3 224 aa30.98■■■□□ 2.55
PKN1-204ENST00000585839 PCGF6Q9BYE7 350 aa30.87■■■□□ 2.53
PKN1-204ENST00000585839 ZCCHC6Q5VYS8 1495 aaKnown RBP30.84■■■□□ 2.53
PKN1-204ENST00000585839 LOC105371045A0A1W2PR82 267 aa30.76■■■□□ 2.52
PKN1-204ENST00000585839 FAM9AQ8IZU1 332 aaPredicted RBP30.63■■■□□ 2.49
PKN1-204ENST00000585839 MYO15BQ96JP2 1530 aa30.61■■■□□ 2.49
PKN1-204ENST00000585839 PPARGC1BQ86YN6 1023 aaKnown RBP30.36■■■□□ 2.45
PKN1-204ENST00000585839 CCDC180Q9P1Z9 1646 aa30.29■■■□□ 2.44
PKN1-204ENST00000585839 HRCP23327 699 aa30.12■■■□□ 2.41
PKN1-204ENST00000585839 TRIM41Q8WV44 630 aa30.04■■■□□ 2.4
PKN1-204ENST00000585839 TTBK1Q5TCY1 1321 aaPredicted RBP29.92■■■□□ 2.38
PKN1-204ENST00000585839 ABCC9O60706 1549 aa29.91■■■□□ 2.38
PKN1-204ENST00000585839 SCRIBQ14160 1630 aa29.79■■■□□ 2.36
PKN1-204ENST00000585839 TRIM26Q12899 539 aaPredicted RBP29.51■■■□□ 2.31
PKN1-204ENST00000585839 RSF1Q96T23 1441 aaPredicted RBP29.41■■■□□ 2.3
PKN1-204ENST00000585839 DCAF1Q9Y4B6 1507 aa29.25■■■□□ 2.27
PKN1-204ENST00000585839 PABPN1Q86U42 306 aaKnown RBP eCLIP29.24■■■□□ 2.27
PKN1-204ENST00000585839 RANGAP1P46060 587 aaPredicted RBP29.23■■■□□ 2.27
PKN1-204ENST00000585839 CECR2Q9BXF3 1484 aa29.23■■■□□ 2.27
PKN1-204ENST00000585839 RB1CC1Q8TDY2 1594 aa29.11■■■□□ 2.25
PKN1-204ENST00000585839 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP29.05■■■□□ 2.24
PKN1-204ENST00000585839 UBTFP17480 764 aaKnown RBP28.94■■■□□ 2.22
PKN1-204ENST00000585839 CCER1Q8TC90 406 aaPredicted RBP28.93■■■□□ 2.22
PKN1-204ENST00000585839 MROH2BQ7Z745 1585 aa28.86■■■□□ 2.21
PKN1-204ENST00000585839 WIZO95785 1651 aa28.66■■■□□ 2.18
PKN1-204ENST00000585839 ZEB1P37275 1124 aaPredicted RBP28.65■■■□□ 2.18
PKN1-204ENST00000585839 HNRNPUL2Q1KMD3 747 aaKnown RBP28.51■■■□□ 2.15
PKN1-204ENST00000585839 NACADO15069 1562 aa28.47■■■□□ 2.15
PKN1-204ENST00000585839 ABCC8Q09428 1581 aa28.44■■■□□ 2.14
PKN1-204ENST00000585839 SOGA1O94964 1423 aa28.33■■■□□ 2.13
PKN1-204ENST00000585839 CCDC88BA6NC98 1476 aa28.32■■■□□ 2.12
PKN1-204ENST00000585839 CSRNP3Q8WYN3 585 aa28.31■■■□□ 2.12
PKN1-204ENST00000585839 YTHDC1Q96MU7 727 aaKnown RBP28.31■■■□□ 2.12
PKN1-204ENST00000585839 APLP2Q06481 763 aa28.25■■■□□ 2.11
PKN1-204ENST00000585839 RUSC2Q8N2Y8 1516 aa28.17■■■□□ 2.1
PKN1-204ENST00000585839 BAZ1AQ9NRL2 1556 aaPredicted RBP28.12■■■□□ 2.09
PKN1-204ENST00000585839 DIEXFQ68CQ4 756 aaKnown RBP28.1■■■□□ 2.09
PKN1-204ENST00000585839 ITGAEP38570 1179 aa28.08■■■□□ 2.08
PKN1-204ENST00000585839 CEP162Q5TB80 1403 aa28.07■■■□□ 2.08
PKN1-204ENST00000585839 SCAF1Q9H7N4 1312 aaKnown RBP28.07■■■□□ 2.08
PKN1-204ENST00000585839 ATP1B4Q9UN42 357 aaPredicted RBP27.94■■■□□ 2.06
PKN1-204ENST00000585839 NEUROD1Q13562 356 aa27.88■■■□□ 2.05
PKN1-204ENST00000585839 SMARCA4P51532 1647 aa27.83■■■□□ 2.05
PKN1-204ENST00000585839 WRNQ14191 1432 aaPredicted RBP eCLIP27.82■■■□□ 2.048e-8■■■■■ 37.6
PKN1-204ENST00000585839 TOP2AP11388 1531 aaKnown RBP27.82■■■□□ 2.04
PKN1-204ENST00000585839 SMARCA2P51531 1590 aa27.76■■■□□ 2.04
PKN1-204ENST00000585839 GTF3C3Q9Y5Q9 886 aa27.76■■■□□ 2.03
PKN1-204ENST00000585839 TNIKQ9UKE5 1360 aa27.72■■■□□ 2.03
PKN1-204ENST00000585839 CENPBP07199 599 aaPredicted RBP27.68■■■□□ 2.02
PKN1-204ENST00000585839 ACIN1Q9UKV3 1341 aaKnown RBP27.66■■■□□ 2.02
PKN1-204ENST00000585839 P3H3Q8IVL6 736 aa27.64■■■□□ 2.02
PKN1-204ENST00000585839 CLIP1P30622 1438 aa27.64■■■□□ 2.01
PKN1-204ENST00000585839 ZNF316A6NFI3 1004 aaPredicted RBP27.62■■■□□ 2.01
PKN1-204ENST00000585839 GOLGA3Q08378 1498 aa27.6■■■□□ 2.01
PKN1-204ENST00000585839 BAZ1BQ9UIG0 1483 aaKnown RBP27.57■■■□□ 2
PKN1-204ENST00000585839 MIER1Q8N108 512 aa27.53■■■□□ 2
PKN1-204ENST00000585839 RAPGEF2Q9Y4G8 1499 aa27.46■■□□□ 1.99
PKN1-204ENST00000585839 KANK4Q5T7N3 995 aaPredicted RBP27.45■■□□□ 1.98
PKN1-204ENST00000585839 UNC13AQ9UPW8 1703 aa27.42■■□□□ 1.98
PKN1-204ENST00000585839 ATAD2BQ9ULI0 1458 aa27.4■■□□□ 1.98
PKN1-204ENST00000585839 EIF4G1Q04637 1599 aaKnown RBP27.4■■□□□ 1.98
PKN1-204ENST00000585839 EEA1Q15075 1411 aa27.37■■□□□ 1.97
PKN1-204ENST00000585839 SYNJ1O43426 1573 aa27.35■■□□□ 1.97
PKN1-204ENST00000585839 CEP164Q9UPV0 1460 aa27.35■■□□□ 1.97
PKN1-204ENST00000585839 BICRAQ9NZM4 1560 aa27.34■■□□□ 1.97
PKN1-204ENST00000585839 FAM50AQ14320 339 aaKnown RBP27.33■■□□□ 1.97
PKN1-204ENST00000585839 HIRIP3Q9BW71 556 aaPredicted RBP27.2■■□□□ 1.94
PKN1-204ENST00000585839 VPS8Q8N3P4 1428 aa27.18■■□□□ 1.94
PKN1-204ENST00000585839 ARID3CA6NKF2 412 aa27.17■■□□□ 1.94
PKN1-204ENST00000585839 SIN3AQ96ST3 1273 aa26.97■■□□□ 1.91
PKN1-204ENST00000585839 KIF21BO75037 1637 aa26.95■■□□□ 1.9
PKN1-204ENST00000585839 KIF27Q86VH2 1401 aa26.94■■□□□ 1.9
PKN1-204ENST00000585839 PELP1Q8IZL8 1130 aaKnown RBP26.94■■□□□ 1.9
PKN1-204ENST00000585839 BCANQ96GW7 911 aa26.93■■□□□ 1.9
PKN1-204ENST00000585839 CUX2O14529 1486 aa26.91■■□□□ 1.9
PKN1-204ENST00000585839 CNGB1Q14028 1251 aaPredicted RBP26.9■■□□□ 1.9
PKN1-204ENST00000585839 KCNH8Q96L42 1107 aa26.86■■□□□ 1.89
PKN1-204ENST00000585839 DDX10Q13206 875 aaKnown RBP26.86■■□□□ 1.89
PKN1-204ENST00000585839 ARAP1Q96P48 1450 aa26.84■■□□□ 1.89
PKN1-204ENST00000585839 DHX57Q6P158 1386 aaKnown RBP26.8■■□□□ 1.88
PKN1-204ENST00000585839 CCNB3Q8WWL7 1395 aa26.75■■□□□ 1.87
PKN1-204ENST00000585839 CUX1P39880 1505 aa26.75■■□□□ 1.87
PKN1-204ENST00000585839 CARMIL1Q5VZK9 1371 aa26.74■■□□□ 1.87
PKN1-204ENST00000585839 CHIC2Q9UKJ5 165 aa26.73■■□□□ 1.87
PKN1-204ENST00000585839 DNAJC5BQ9UF47 199 aa26.69■■□□□ 1.86
PKN1-204ENST00000585839 PEG3Q9GZU2 1588 aa26.66■■□□□ 1.86
PKN1-204ENST00000585839 TOP2BQ02880 1626 aa26.66■■□□□ 1.86
PKN1-204ENST00000585839 IGF1RP08069 1367 aa26.65■■□□□ 1.86
PKN1-204ENST00000585839 RAB3GAP2Q9H2M9 1393 aa26.65■■□□□ 1.86
PKN1-204ENST00000585839 PRXQ9BXM0 1461 aa26.64■■□□□ 1.86
PKN1-204ENST00000585839 TRIM52Q96A61 297 aa26.61■■□□□ 1.85
PKN1-204ENST00000585839 FHOD3Q2V2M9 1422 aa26.59■■□□□ 1.85
PKN1-204ENST00000585839 ARHGAP35Q9NRY4 1499 aa26.59■■□□□ 1.85
PKN1-204ENST00000585839 NCAPD3P42695 1498 aa26.58■■□□□ 1.85
PKN1-204ENST00000585839 RAD54L2Q9Y4B4 1467 aa26.57■■□□□ 1.84
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms