RNA–Protein interactions for RNA: ENST00000485810.1

PRPF38B-205, Transcript of pre-mRNA processing factor 38B, humanhuman

TSL 2

Gene PRPF38B, Length 1,352 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF38B-205ENST00000485810 AEBP2Q6ZN18 517 aaPredicted RBP20.16■□□□□ 0.82
PRPF38B-205ENST00000485810 CHIC1Q5VXU3 224 aa18.95■□□□□ 0.62
PRPF38B-205ENST00000485810 SENP3Q9H4L4 574 aaPredicted RBP17.04■□□□□ 0.32
PRPF38B-205ENST00000485810 PHF23Q9BUL5 403 aaPredicted RBP16.89■□□□□ 0.3
PRPF38B-205ENST00000485810 FOXD1Q16676 465 aa16■□□□□ 0.15
PRPF38B-205ENST00000485810 PLPPR3Q6T4P5 718 aa15.02■□□□□ -0
PRPF38B-205ENST00000485810 PPP6R1Q9UPN7 881 aa14.96□□□□□ -0.02
PRPF38B-205ENST00000485810 MSH5O43196 834 aa14.88□□□□□ -0.03
PRPF38B-205ENST00000485810 ADRA2BP18089 450 aa14.85□□□□□ -0.03
PRPF38B-205ENST00000485810 PIAS4Q8N2W9 510 aaPredicted RBP14.84□□□□□ -0.03
PRPF38B-205ENST00000485810 POTEDQ86YR6 584 aa14.82□□□□□ -0.04
PRPF38B-205ENST00000485810 MAPK8IP2Q13387 824 aaPredicted RBP13.71□□□□□ -0.22
PRPF38B-205ENST00000485810 DMRT2Q9Y5R5 561 aa13.56□□□□□ -0.24
PRPF38B-205ENST00000485810 SCAF1Q9H7N4 1312 aaKnown RBP13.42□□□□□ -0.26
PRPF38B-205ENST00000485810 PPP4R3CPQ6ZMV5 832 aa13.21□□□□□ -0.29
PRPF38B-205ENST00000485810 HOXD11P31277 338 aaPredicted RBP13.04□□□□□ -0.32
PRPF38B-205ENST00000485810 CNKSR2Q8WXI2 1034 aa12.94□□□□□ -0.34
PRPF38B-205ENST00000485810 DCAF8L1A6NGE4 600 aa12.92□□□□□ -0.34
PRPF38B-205ENST00000485810 RNF216Q9NWF9 866 aaPredicted RBP12.87□□□□□ -0.35
PRPF38B-205ENST00000485810 CACNB1Q02641 598 aaPredicted RBP12.86□□□□□ -0.35
PRPF38B-205ENST00000485810 RNF39Q9H2S5 420 aa12.78□□□□□ -0.36
PRPF38B-205ENST00000485810 NCBP3Q53F19 620 aaKnown RBP12.56□□□□□ -0.4
PRPF38B-205ENST00000485810 DNAJC5BQ9UF47 199 aa12.56□□□□□ -0.4
PRPF38B-205ENST00000485810 C1QBPQ07021 282 aaKnown RBP12.52□□□□□ -0.41
PRPF38B-205ENST00000485810 NPM3O75607 178 aaKnown RBP12.51□□□□□ -0.41
PRPF38B-205ENST00000485810 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.33□□□□□ -0.443e-7■■■■□ 23.4
PRPF38B-205ENST00000485810 KCNA4P22459 653 aa12.19□□□□□ -0.46
PRPF38B-205ENST00000485810 U3KPZ7 1027 aaPredicted RBP12.16□□□□□ -0.46
PRPF38B-205ENST00000485810 SLC4A2P04920 1241 aa12.03□□□□□ -0.48
PRPF38B-205ENST00000485810 SPINK5Q9NQ38 1064 aaPredicted RBP12.03□□□□□ -0.48
PRPF38B-205ENST00000485810 DSG3P32926 999 aa11.94□□□□□ -0.5
PRPF38B-205ENST00000485810 CAPN15O75808 1086 aa11.91□□□□□ -0.5
PRPF38B-205ENST00000485810 TRHP20396 242 aaPredicted RBP11.71□□□□□ -0.53
PRPF38B-205ENST00000485810 ABCB7O75027 752 aa11.67□□□□□ -0.54
PRPF38B-205ENST00000485810 ZNF219Q9P2Y4 722 aaPredicted RBP11.64□□□□□ -0.55
PRPF38B-205ENST00000485810 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.61□□□□□ -0.55
PRPF38B-205ENST00000485810 HNRNPUL2Q1KMD3 747 aaKnown RBP11.61□□□□□ -0.55
PRPF38B-205ENST00000485810 APLP2Q06481 763 aa11.6□□□□□ -0.55
PRPF38B-205ENST00000485810 SAMD1Q6SPF0 538 aaPredicted RBP11.58□□□□□ -0.56
PRPF38B-205ENST00000485810 POTEHQ6S545 545 aa11.55□□□□□ -0.56
PRPF38B-205ENST00000485810 MYCNP04198 464 aaPredicted RBP11.5□□□□□ -0.57
PRPF38B-205ENST00000485810 SLC4A1APQ9BWU0 796 aaKnown RBP11.42□□□□□ -0.58
PRPF38B-205ENST00000485810 POLA2Q14181 598 aa11.39□□□□□ -0.59
PRPF38B-205ENST00000485810 ATF5Q9Y2D1 282 aaPredicted RBP11.39□□□□□ -0.59
PRPF38B-205ENST00000485810 FOXD4L1Q9NU39 408 aa11.34□□□□□ -0.59
PRPF38B-205ENST00000485810 ZBTB22O15209 634 aa11.28□□□□□ -0.6
PRPF38B-205ENST00000485810 RBM42Q9BTD8 480 aaKnown RBP11.27□□□□□ -0.61
PRPF38B-205ENST00000485810 CHRDL2Q6WN34 429 aa11.14□□□□□ -0.63
PRPF38B-205ENST00000485810 AKT1S1Q96B36 256 aa11.05□□□□□ -0.64
PRPF38B-205ENST00000485810 OSCARQ8IYS5 282 aa11.04□□□□□ -0.64
PRPF38B-205ENST00000485810 ZBTB12Q9Y330 459 aaPredicted RBP11.04□□□□□ -0.64
PRPF38B-205ENST00000485810 ATXN8OSP0DMR3 200 aa10.99□□□□□ -0.65
PRPF38B-205ENST00000485810 REM2Q8IYK8 340 aaPredicted RBP10.99□□□□□ -0.65
PRPF38B-205ENST00000485810 PIP4P2Q8N4L2 257 aa10.9□□□□□ -0.67
PRPF38B-205ENST00000485810 PITPNM1O00562 1244 aa10.88□□□□□ -0.67
PRPF38B-205ENST00000485810 MKRN4PQ13434 485 aaPredicted RBP10.84□□□□□ -0.67
PRPF38B-205ENST00000485810 FXR2P51116 673 aaKnown RBP eCLIP10.82□□□□□ -0.68
PRPF38B-205ENST00000485810 SP7Q8TDD2 431 aaPredicted RBP10.77□□□□□ -0.68
PRPF38B-205ENST00000485810 SPDYE2BA6NHP3 402 aa10.77□□□□□ -0.69
PRPF38B-205ENST00000485810 SPDYE6P0CI01 402 aa10.77□□□□□ -0.69
PRPF38B-205ENST00000485810 SPDYE2Q495Y8 402 aa10.77□□□□□ -0.69
PRPF38B-205ENST00000485810 FBLN2P98095 1184 aa10.75□□□□□ -0.69
PRPF38B-205ENST00000485810 EVX2Q03828 476 aa10.67□□□□□ -0.7
PRPF38B-205ENST00000485810 SSUH2Q9Y2M2 353 aa10.67□□□□□ -0.7
PRPF38B-205ENST00000485810 HAX1O00165 279 aa10.65□□□□□ -0.7
PRPF38B-205ENST00000485810 CSRNP3Q8WYN3 585 aa10.63□□□□□ -0.71
PRPF38B-205ENST00000485810 ZNF692Q9BU19 519 aaPredicted RBP10.63□□□□□ -0.71
PRPF38B-205ENST00000485810 SPDYE1Q8NFV5 336 aaPredicted RBP10.58□□□□□ -0.72
PRPF38B-205ENST00000485810 CLEC11AQ9Y240 323 aa10.58□□□□□ -0.72
PRPF38B-205ENST00000485810 PRKAR2AP13861 404 aaKnown RBP10.56□□□□□ -0.72
PRPF38B-205ENST00000485810 PABPN1Q86U42 306 aaKnown RBP eCLIP10.49□□□□□ -0.73
PRPF38B-205ENST00000485810 C19orf67A6NJJ6 358 aa10.48□□□□□ -0.73
PRPF38B-205ENST00000485810 CHADLQ6NUI6 762 aa10.48□□□□□ -0.73
PRPF38B-205ENST00000485810 PRR29P0C7W0 189 aa10.39□□□□□ -0.75
PRPF38B-205ENST00000485810 EHMT2Q96KQ7 1210 aa10.36□□□□□ -0.75
PRPF38B-205ENST00000485810 GABBR2O75899 941 aa10.34□□□□□ -0.75
PRPF38B-205ENST00000485810 FARP1Q9Y4F1 1045 aaPredicted RBP10.26□□□□□ -0.77
PRPF38B-205ENST00000485810 CD44P16070 742 aaKnown RBP10.21□□□□□ -0.78
PRPF38B-205ENST00000485810 CREBZFQ9NS37 354 aa10.21□□□□□ -0.78
PRPF38B-205ENST00000485810 POTEIP0CG38 1075 aa10.2□□□□□ -0.78
PRPF38B-205ENST00000485810 SPDYE4A6NLX3 237 aa10.17□□□□□ -0.78
PRPF38B-205ENST00000485810 LHX8Q68G74 356 aa10.1□□□□□ -0.79
PRPF38B-205ENST00000485810 STAG3Q9UJ98 1225 aa10.1□□□□□ -0.79
PRPF38B-205ENST00000485810 ZNF579Q8NAF0 562 aaKnown RBP10.07□□□□□ -0.8
PRPF38B-205ENST00000485810 MNX1P50219 401 aaPredicted RBP10.05□□□□□ -0.8
PRPF38B-205ENST00000485810 ZRANB1Q9UGI0 708 aa10.05□□□□□ -0.8
PRPF38B-205ENST00000485810 CLCN6P51797 869 aa10.01□□□□□ -0.81
PRPF38B-205ENST00000485810 GALR2O43603 387 aaPredicted RBP10□□□□□ -0.81
PRPF38B-205ENST00000485810 PROM2Q8N271 834 aa10□□□□□ -0.81
PRPF38B-205ENST00000485810 PLSCR2Q9NRY7 297 aa10□□□□□ -0.81
PRPF38B-205ENST00000485810 PHF12Q96QT6 1004 aa9.95□□□□□ -0.82
PRPF38B-205ENST00000485810 DCBLD2Q96PD2 775 aa9.94□□□□□ -0.82
PRPF38B-205ENST00000485810 NPM1P06748 294 aaKnown RBP eCLIP9.88□□□□□ -0.83
PRPF38B-205ENST00000485810 POTEB2H3BUK9 544 aa9.87□□□□□ -0.83
PRPF38B-205ENST00000485810 PELP1Q8IZL8 1130 aaKnown RBP9.87□□□□□ -0.83
PRPF38B-205ENST00000485810 PAK3O75914 559 aaPredicted RBP9.83□□□□□ -0.84
PRPF38B-205ENST00000485810 MS4A3Q96HJ5 214 aa9.81□□□□□ -0.84
PRPF38B-205ENST00000485810 OTUD5Q96G74 571 aa9.79□□□□□ -0.84
PRPF38B-205ENST00000485810 CCDC61Q9Y6R9 512 aa9.77□□□□□ -0.84
PRPF38B-205ENST00000485810 TSPYL2Q9H2G4 693 aaPredicted RBP9.76□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 9 ms