RNA–Protein interactions for RNA: ENST00000514627.5

YIPF3-217, Transcript of Yip1 domain family member 3, humanhuman

TSL 3

Gene YIPF3, Length 854 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YIPF3-217ENST00000514627 NISCHQ9Y2I1 1504 aa31.19■■■□□ 2.58
YIPF3-217ENST00000514627 CCDC180Q9P1Z9 1646 aa27.9■■■□□ 2.06
YIPF3-217ENST00000514627 ABCC9O60706 1549 aa27.85■■■□□ 2.05
YIPF3-217ENST00000514627 RB1CC1Q8TDY2 1594 aa26.57■■□□□ 1.84
YIPF3-217ENST00000514627 NACADO15069 1562 aa26.43■■□□□ 1.82
YIPF3-217ENST00000514627 DCAF8L2P0C7V8 631 aa26.32■■□□□ 1.8
YIPF3-217ENST00000514627 MYO15BQ96JP2 1530 aa26.14■■□□□ 1.78
YIPF3-217ENST00000514627 DNAJC5BQ9UF47 199 aa26.11■■□□□ 1.77
YIPF3-217ENST00000514627 PABPN1Q86U42 306 aaKnown RBP eCLIP25.98■■□□□ 1.75
YIPF3-217ENST00000514627 ZCCHC6Q5VYS8 1495 aaKnown RBP25.84■■□□□ 1.73
YIPF3-217ENST00000514627 DCAF1Q9Y4B6 1507 aa25.81■■□□□ 1.72
YIPF3-217ENST00000514627 UNC13AQ9UPW8 1703 aa25.8■■□□□ 1.72
YIPF3-217ENST00000514627 BICRAQ9NZM4 1560 aa25.75■■□□□ 1.71
YIPF3-217ENST00000514627 SHROOM4Q9ULL8 1493 aa25.53■■□□□ 1.68
YIPF3-217ENST00000514627 SCRIBQ14160 1630 aa25.38■■□□□ 1.65
YIPF3-217ENST00000514627 CC2D2AQ9P2K1 1620 aa25.14■■□□□ 1.61
YIPF3-217ENST00000514627 EIF4G1Q04637 1599 aaKnown RBP25.13■■□□□ 1.61
YIPF3-217ENST00000514627 CECR2Q9BXF3 1484 aa25.12■■□□□ 1.61
YIPF3-217ENST00000514627 NCAPD3P42695 1498 aa24.44■■□□□ 1.5
YIPF3-217ENST00000514627 ATAD2BQ9ULI0 1458 aa24.32■■□□□ 1.48
YIPF3-217ENST00000514627 SMARCA2P51531 1590 aa24.27■■□□□ 1.48
YIPF3-217ENST00000514627 SMARCA4P51532 1647 aa24.26■■□□□ 1.47
YIPF3-217ENST00000514627 BAZ1AQ9NRL2 1556 aaPredicted RBP24.2■■□□□ 1.47
YIPF3-217ENST00000514627 HMGXB3Q12766 1538 aa24.2■■□□□ 1.47
YIPF3-217ENST00000514627 BAZ1BQ9UIG0 1483 aaKnown RBP24.08■■□□□ 1.45
YIPF3-217ENST00000514627 PEG3Q9GZU2 1588 aa24.08■■□□□ 1.44
YIPF3-217ENST00000514627 ERCC6Q03468 1493 aa24.07■■□□□ 1.44
YIPF3-217ENST00000514627 CUX2O14529 1486 aa24.04■■□□□ 1.44
YIPF3-217ENST00000514627 DNAJC5Q9H3Z4 198 aa24■■□□□ 1.43
YIPF3-217ENST00000514627 MROH2BQ7Z745 1585 aa23.99■■□□□ 1.43
YIPF3-217ENST00000514627 NESP48681 1621 aa23.92■■□□□ 1.42
YIPF3-217ENST00000514627 LAMC3Q9Y6N6 1575 aa23.82■■□□□ 1.4
YIPF3-217ENST00000514627 PDS5BQ9NTI5 1447 aa23.75■■□□□ 1.39
YIPF3-217ENST00000514627 CADPSQ9ULU8 1353 aa23.7■■□□□ 1.38
YIPF3-217ENST00000514627 WIZO95785 1651 aa23.65■■□□□ 1.38
YIPF3-217ENST00000514627 THOC2Q8NI27 1593 aaKnown RBP23.65■■□□□ 1.38
YIPF3-217ENST00000514627 RSF1Q96T23 1441 aaPredicted RBP23.58■■□□□ 1.36
YIPF3-217ENST00000514627 KIF21AQ7Z4S6 1674 aa23.54■■□□□ 1.36
YIPF3-217ENST00000514627 MRC2Q9UBG0 1479 aa23.48■■□□□ 1.35
YIPF3-217ENST00000514627 TOP2AP11388 1531 aaKnown RBP23.43■■□□□ 1.34
YIPF3-217ENST00000514627 CFTRP13569 1480 aa23.42■■□□□ 1.34
YIPF3-217ENST00000514627 CEP164Q9UPV0 1460 aa23.4■■□□□ 1.34
YIPF3-217ENST00000514627 WDR62O43379 1518 aa23.39■■□□□ 1.34
YIPF3-217ENST00000514627 FANCD2Q9BXW9 1451 aa23.37■■□□□ 1.33
YIPF3-217ENST00000514627 CCDC88BA6NC98 1476 aa23.17■■□□□ 1.3
YIPF3-217ENST00000514627 URB2Q14146 1524 aaKnown RBP23.15■■□□□ 1.3
YIPF3-217ENST00000514627 PRDM2Q13029 1718 aa23.02■■□□□ 1.28
YIPF3-217ENST00000514627 OSCARQ8IYS5 282 aa23.01■■□□□ 1.27
YIPF3-217ENST00000514627 ABCC8Q09428 1581 aa22.97■■□□□ 1.27
YIPF3-217ENST00000514627 IFT140Q96RY7 1462 aa22.96■■□□□ 1.27
YIPF3-217ENST00000514627 TOPBP1Q92547 1522 aa22.92■■□□□ 1.26
YIPF3-217ENST00000514627 TRIM41Q8WV44 630 aa22.9■■□□□ 1.26
YIPF3-217ENST00000514627 ZNF608Q9ULD9 1512 aaPredicted RBP22.85■■□□□ 1.25
YIPF3-217ENST00000514627 DNMBPQ6XZF7 1577 aa22.84■■□□□ 1.25
YIPF3-217ENST00000514627 POLA1P09884 1462 aaPredicted RBP22.7■■□□□ 1.22
YIPF3-217ENST00000514627 TARBP1Q13395 1621 aaKnown RBP22.69■■□□□ 1.22
YIPF3-217ENST00000514627 EIF4G3O43432 1585 aaKnown RBP22.68■■□□□ 1.22
YIPF3-217ENST00000514627 AQRO60306 1485 aaKnown RBP eCLIP22.68■■□□□ 1.221e-8■■■■□ 21
YIPF3-217ENST00000514627 SOGA1O94964 1423 aa22.65■■□□□ 1.22
YIPF3-217ENST00000514627 RAD54L2Q9Y4B4 1467 aa22.6■■□□□ 1.21
YIPF3-217ENST00000514627 SUPT5HO00267 1087 aaKnown RBP22.57■■□□□ 1.2
YIPF3-217ENST00000514627 TDRD9Q8NDG6 1382 aaKnown RBP22.57■■□□□ 1.2
YIPF3-217ENST00000514627 FGD5Q6ZNL6 1462 aa22.56■■□□□ 1.2
YIPF3-217ENST00000514627 FBLN2P98095 1184 aa22.55■■□□□ 1.2
YIPF3-217ENST00000514627 RIMBP3CA6NJZ7 1639 aa22.55■■□□□ 1.2
YIPF3-217ENST00000514627 RIMBP3BA6NNM3 1639 aa22.55■■□□□ 1.2
YIPF3-217ENST00000514627 RIMBP3Q9UFD9 1639 aa22.55■■□□□ 1.2
YIPF3-217ENST00000514627 ARHGEF11O15085 1522 aa22.54■■□□□ 1.2
YIPF3-217ENST00000514627 CUX1P39880 1505 aa22.53■■□□□ 1.2
YIPF3-217ENST00000514627 WDR97A6NE52 1622 aa22.53■■□□□ 1.2
YIPF3-217ENST00000514627 CHD1O14646 1710 aa22.45■■□□□ 1.19
YIPF3-217ENST00000514627 GRIN2BQ13224 1484 aa22.43■■□□□ 1.18
YIPF3-217ENST00000514627 SNAPC4Q5SXM2 1469 aa22.43■■□□□ 1.18
YIPF3-217ENST00000514627 CYB5RLQ6IPT4 315 aa22.43■■□□□ 1.18
YIPF3-217ENST00000514627 CHMP7Q8WUX9 453 aaPredicted RBP22.43■■□□□ 1.18
YIPF3-217ENST00000514627 MAGI1Q96QZ7 1491 aaPredicted RBP22.42■■□□□ 1.18
YIPF3-217ENST00000514627 GAPVD1Q14C86 1478 aa22.35■■□□□ 1.17
YIPF3-217ENST00000514627 SYNJ2O15056 1496 aa22.34■■□□□ 1.17
YIPF3-217ENST00000514627 ABCA10Q8WWZ4 1543 aa22.34■■□□□ 1.17
YIPF3-217ENST00000514627 ARAP1Q96P48 1450 aa22.31■■□□□ 1.16
YIPF3-217ENST00000514627 SYNJ1O43426 1573 aa22.3■■□□□ 1.16
YIPF3-217ENST00000514627 WRNQ14191 1432 aaPredicted RBP eCLIP22.3■■□□□ 1.16
YIPF3-217ENST00000514627 CLASP1Q7Z460 1538 aa22.29■■□□□ 1.16
YIPF3-217ENST00000514627 ABCA5Q8WWZ7 1642 aa22.23■■□□□ 1.15
YIPF3-217ENST00000514627 PBRM1Q86U86 1689 aa22.2■■□□□ 1.15
YIPF3-217ENST00000514627 TOP2BQ02880 1626 aa22.2■■□□□ 1.14
YIPF3-217ENST00000514627 BIVM-ERCC5R4GMW8 1640 aa22.17■■□□□ 1.14
YIPF3-217ENST00000514627 TRHP20396 242 aaPredicted RBP22.15■■□□□ 1.14
YIPF3-217ENST00000514627 GRIN2AQ12879 1464 aa22.12■■□□□ 1.13
YIPF3-217ENST00000514627 FHAD1B1AJZ9 1412 aa22.1■■□□□ 1.13
YIPF3-217ENST00000514627 NUP160Q12769 1436 aa22.06■■□□□ 1.12
YIPF3-217ENST00000514627 ADAMTS12P58397 1594 aa22.06■■□□□ 1.12
YIPF3-217ENST00000514627 ERICH3Q5RHP9 1530 aa22.06■■□□□ 1.12
YIPF3-217ENST00000514627 CEP170Q5SW79 1584 aa21.98■■□□□ 1.11
YIPF3-217ENST00000514627 SHROOM2Q13796 1616 aa21.9■■□□□ 1.1
YIPF3-217ENST00000514627 ERCC6L2Q5T890 1561 aa21.9■■□□□ 1.1
YIPF3-217ENST00000514627 JPH4Q96JJ6 628 aa21.88■■□□□ 1.09
YIPF3-217ENST00000514627 KIF27Q86VH2 1401 aa21.85■■□□□ 1.09
YIPF3-217ENST00000514627 PRG4Q92954 1404 aaPredicted RBP21.84■■□□□ 1.09
YIPF3-217ENST00000514627 IGF1RP08069 1367 aa21.83■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 71.9 ms