RNA–Protein interactions for RNA: ENST00000545209.1

SPPL3-209, Transcript of signal peptide peptidase like 3, humanhuman

TSL 1 (best)

Gene SPPL3, Length 797 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPPL3-209ENST00000545209 AEBP2Q6ZN18 517 aaPredicted RBP21.69■■□□□ 1.06
SPPL3-209ENST00000545209 CHIC1Q5VXU3 224 aa21.05■□□□□ 0.96
SPPL3-209ENST00000545209 PHF23Q9BUL5 403 aaPredicted RBP18.49■□□□□ 0.55
SPPL3-209ENST00000545209 SENP3Q9H4L4 574 aaPredicted RBP18.45■□□□□ 0.54
SPPL3-209ENST00000545209 FOXD1Q16676 465 aa17.12■□□□□ 0.33
SPPL3-209ENST00000545209 PLPPR3Q6T4P5 718 aa17.03■□□□□ 0.32
SPPL3-209ENST00000545209 PPP6R1Q9UPN7 881 aa16.37■□□□□ 0.21
SPPL3-209ENST00000545209 ADRA2BP18089 450 aa16.34■□□□□ 0.21
SPPL3-209ENST00000545209 PIAS4Q8N2W9 510 aaPredicted RBP16.11■□□□□ 0.17
SPPL3-209ENST00000545209 MSH5O43196 834 aa15.86■□□□□ 0.13
SPPL3-209ENST00000545209 NISCHQ9Y2I1 1504 aa15.54■□□□□ 0.08
SPPL3-209ENST00000545209 PPP4R3CPQ6ZMV5 832 aa14.99□□□□□ -0.01
SPPL3-209ENST00000545209 SCAF1Q9H7N4 1312 aaKnown RBP14.97□□□□□ -0.01
SPPL3-209ENST00000545209 MAPK8IP2Q13387 824 aaPredicted RBP14.88□□□□□ -0.03
SPPL3-209ENST00000545209 DMRT2Q9Y5R5 561 aa14.7□□□□□ -0.06
SPPL3-209ENST00000545209 POTEDQ86YR6 584 aa14.69□□□□□ -0.06
SPPL3-209ENST00000545209 CNKSR2Q8WXI2 1034 aa14.6□□□□□ -0.07
SPPL3-209ENST00000545209 NCBP3Q53F19 620 aaKnown RBP14.56□□□□□ -0.08
SPPL3-209ENST00000545209 KCNA4P22459 653 aa14.46□□□□□ -0.09
SPPL3-209ENST00000545209 RNF216Q9NWF9 866 aaPredicted RBP14.35□□□□□ -0.11
SPPL3-209ENST00000545209 HOXD11P31277 338 aaPredicted RBP14.34□□□□□ -0.11
SPPL3-209ENST00000545209 NPM3O75607 178 aaKnown RBP14.32□□□□□ -0.12
SPPL3-209ENST00000545209 DCAF8L1A6NGE4 600 aa14.06□□□□□ -0.16
SPPL3-209ENST00000545209 DNAJC5BQ9UF47 199 aa13.95□□□□□ -0.18
SPPL3-209ENST00000545209 SLC4A1APQ9BWU0 796 aaKnown RBP13.75□□□□□ -0.21
SPPL3-209ENST00000545209 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.67□□□□□ -0.22
SPPL3-209ENST00000545209 SLC4A2P04920 1241 aa13.58□□□□□ -0.24
SPPL3-209ENST00000545209 RNF39Q9H2S5 420 aa13.57□□□□□ -0.24
SPPL3-209ENST00000545209 CCDC180Q9P1Z9 1646 aa13.53□□□□□ -0.24
SPPL3-209ENST00000545209 C1QBPQ07021 282 aaKnown RBP13.42□□□□□ -0.26
SPPL3-209ENST00000545209 U3KPZ7 1027 aaPredicted RBP13.41□□□□□ -0.26
SPPL3-209ENST00000545209 FOXD4L1Q9NU39 408 aa13.36□□□□□ -0.27
SPPL3-209ENST00000545209 CACNB1Q02641 598 aaPredicted RBP13.33□□□□□ -0.28
SPPL3-209ENST00000545209 ZBTB22O15209 634 aa13.3□□□□□ -0.28
SPPL3-209ENST00000545209 MYCNP04198 464 aaPredicted RBP13.25□□□□□ -0.29
SPPL3-209ENST00000545209 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.22□□□□□ -0.29
SPPL3-209ENST00000545209 HNRNPUL2Q1KMD3 747 aaKnown RBP13.22□□□□□ -0.29
SPPL3-209ENST00000545209 EHMT2Q96KQ7 1210 aa13.17□□□□□ -0.3
SPPL3-209ENST00000545209 SAMD1Q6SPF0 538 aaPredicted RBP13.16□□□□□ -0.3
SPPL3-209ENST00000545209 APLP2Q06481 763 aa13.11□□□□□ -0.31
SPPL3-209ENST00000545209 CSRNP3Q8WYN3 585 aa13.11□□□□□ -0.31
SPPL3-209ENST00000545209 SPINK5Q9NQ38 1064 aaPredicted RBP13.09□□□□□ -0.31
SPPL3-209ENST00000545209 ZCCHC6Q5VYS8 1495 aaKnown RBP13.09□□□□□ -0.31
SPPL3-209ENST00000545209 CAPN15O75808 1086 aa13.04□□□□□ -0.32
SPPL3-209ENST00000545209 TRHP20396 242 aaPredicted RBP12.95□□□□□ -0.34
SPPL3-209ENST00000545209 ZNF219Q9P2Y4 722 aaPredicted RBP12.94□□□□□ -0.34
SPPL3-209ENST00000545209 ATXN8OSP0DMR3 200 aa12.92□□□□□ -0.34
SPPL3-209ENST00000545209 ATF5Q9Y2D1 282 aaPredicted RBP12.89□□□□□ -0.35
SPPL3-209ENST00000545209 DCAF1Q9Y4B6 1507 aa12.88□□□□□ -0.35
SPPL3-209ENST00000545209 DSG3P32926 999 aa12.86□□□□□ -0.35
SPPL3-209ENST00000545209 DCAF8L2P0C7V8 631 aa12.82□□□□□ -0.36
SPPL3-209ENST00000545209 ABCB7O75027 752 aa12.77□□□□□ -0.37
SPPL3-209ENST00000545209 SHROOM4Q9ULL8 1493 aa12.75□□□□□ -0.37
SPPL3-209ENST00000545209 POLA2Q14181 598 aa12.71□□□□□ -0.37
SPPL3-209ENST00000545209 MYO15BQ96JP2 1530 aa12.7□□□□□ -0.38
SPPL3-209ENST00000545209 ABCC9O60706 1549 aa12.68□□□□□ -0.38
SPPL3-209ENST00000545209 NACADO15069 1562 aa12.59□□□□□ -0.39
SPPL3-209ENST00000545209 ZBTB12Q9Y330 459 aaPredicted RBP12.49□□□□□ -0.41
SPPL3-209ENST00000545209 RB1CC1Q8TDY2 1594 aa12.46□□□□□ -0.42
SPPL3-209ENST00000545209 SCRIBQ14160 1630 aa12.44□□□□□ -0.42
SPPL3-209ENST00000545209 FBLN2P98095 1184 aa12.38□□□□□ -0.43
SPPL3-209ENST00000545209 SUPT5HO00267 1087 aaKnown RBP12.34□□□□□ -0.43
SPPL3-209ENST00000545209 MKRN4PQ13434 485 aaPredicted RBP12.33□□□□□ -0.44
SPPL3-209ENST00000545209 OSCARQ8IYS5 282 aa12.27□□□□□ -0.45
SPPL3-209ENST00000545209 RBM42Q9BTD8 480 aaKnown RBP12.27□□□□□ -0.45
SPPL3-209ENST00000545209 SPDYE2BA6NHP3 402 aa12.15□□□□□ -0.46
SPPL3-209ENST00000545209 SPDYE6P0CI01 402 aa12.15□□□□□ -0.46
SPPL3-209ENST00000545209 SPDYE2Q495Y8 402 aa12.15□□□□□ -0.46
SPPL3-209ENST00000545209 UNC13AQ9UPW8 1703 aa12.11□□□□□ -0.47
SPPL3-209ENST00000545209 RSF1Q96T23 1441 aaPredicted RBP12.1□□□□□ -0.47
SPPL3-209ENST00000545209 AKT1S1Q96B36 256 aa12.09□□□□□ -0.47
SPPL3-209ENST00000545209 ZNF692Q9BU19 519 aaPredicted RBP12.07□□□□□ -0.48
SPPL3-209ENST00000545209 CECR2Q9BXF3 1484 aa12.04□□□□□ -0.48
SPPL3-209ENST00000545209 SSUH2Q9Y2M2 353 aa12.03□□□□□ -0.48
SPPL3-209ENST00000545209 BAZ1AQ9NRL2 1556 aaPredicted RBP12.02□□□□□ -0.49
SPPL3-209ENST00000545209 BICRAQ9NZM4 1560 aa12.01□□□□□ -0.49
SPPL3-209ENST00000545209 MROH2BQ7Z745 1585 aa12□□□□□ -0.49
SPPL3-209ENST00000545209 SPDYE4A6NLX3 237 aa11.99□□□□□ -0.49
SPPL3-209ENST00000545209 PABPN1Q86U42 306 aaKnown RBP eCLIP11.97□□□□□ -0.49
SPPL3-209ENST00000545209 REM2Q8IYK8 340 aaPredicted RBP11.97□□□□□ -0.49
SPPL3-209ENST00000545209 SMARCA4P51532 1647 aa11.93□□□□□ -0.5
SPPL3-209ENST00000545209 WIZO95785 1651 aa11.89□□□□□ -0.51
SPPL3-209ENST00000545209 FKBP8Q14318 412 aa11.85□□□□□ -0.51
SPPL3-209ENST00000545209 SPDYE1Q8NFV5 336 aaPredicted RBP11.83□□□□□ -0.52
SPPL3-209ENST00000545209 TOP2AP11388 1531 aaKnown RBP11.82□□□□□ -0.52
SPPL3-209ENST00000545209 PITPNM1O00562 1244 aa11.82□□□□□ -0.52
SPPL3-209ENST00000545209 CHRDL2Q6WN34 429 aa11.82□□□□□ -0.52
SPPL3-209ENST00000545209 PEG3Q9GZU2 1588 aa11.78□□□□□ -0.52
SPPL3-209ENST00000545209 PROM2Q8N271 834 aa11.77□□□□□ -0.53
SPPL3-209ENST00000545209 CLEC11AQ9Y240 323 aa11.77□□□□□ -0.53
SPPL3-209ENST00000545209 SMARCA2P51531 1590 aa11.75□□□□□ -0.53
SPPL3-209ENST00000545209 ATAD2BQ9ULI0 1458 aa11.71□□□□□ -0.53
SPPL3-209ENST00000545209 STAG3Q9UJ98 1225 aa11.69□□□□□ -0.54
SPPL3-209ENST00000545209 CCDC88BA6NC98 1476 aa11.68□□□□□ -0.54
SPPL3-209ENST00000545209 BAZ1BQ9UIG0 1483 aaKnown RBP11.68□□□□□ -0.54
SPPL3-209ENST00000545209 EIF4G1Q04637 1599 aaKnown RBP11.67□□□□□ -0.54
SPPL3-209ENST00000545209 PRR29P0C7W0 189 aa11.65□□□□□ -0.54
SPPL3-209ENST00000545209 FXR2P51116 673 aaKnown RBP eCLIP11.64□□□□□ -0.55
SPPL3-209ENST00000545209 PIP4P2Q8N4L2 257 aa11.63□□□□□ -0.55
SPPL3-209ENST00000545209 POTEHQ6S545 545 aa11.61□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 74.9 ms