RNA–Protein interactions for RNA: ENST00000370025.8

PRPF38B-203, Transcript of pre-mRNA processing factor 38B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PRPF38B, Length 3,693 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF38B-203ENST00000370025 NISCHQ9Y2I1 1504 aa21.78■■□□□ 1.08
PRPF38B-203ENST00000370025 CCDC180Q9P1Z9 1646 aa18.88■□□□□ 0.61
PRPF38B-203ENST00000370025 ZCCHC6Q5VYS8 1495 aaKnown RBP18.31■□□□□ 0.52
PRPF38B-203ENST00000370025 DCAF8L2P0C7V8 631 aa18.06■□□□□ 0.48
PRPF38B-203ENST00000370025 DCAF1Q9Y4B6 1507 aa17.98■□□□□ 0.47
PRPF38B-203ENST00000370025 SHROOM4Q9ULL8 1493 aa17.96■□□□□ 0.47
PRPF38B-203ENST00000370025 ABCC9O60706 1549 aa17.75■□□□□ 0.43
PRPF38B-203ENST00000370025 MYO15BQ96JP2 1530 aa17.69■□□□□ 0.42
PRPF38B-203ENST00000370025 NACADO15069 1562 aa17.56■□□□□ 0.4
PRPF38B-203ENST00000370025 SCRIBQ14160 1630 aa17.42■□□□□ 0.38
PRPF38B-203ENST00000370025 SUPT5HO00267 1087 aaKnown RBP17.41■□□□□ 0.38
PRPF38B-203ENST00000370025 RB1CC1Q8TDY2 1594 aa17.38■□□□□ 0.37
PRPF38B-203ENST00000370025 UNC13AQ9UPW8 1703 aa17■□□□□ 0.31
PRPF38B-203ENST00000370025 RSF1Q96T23 1441 aaPredicted RBP16.97■□□□□ 0.31
PRPF38B-203ENST00000370025 CECR2Q9BXF3 1484 aa16.91■□□□□ 0.3
PRPF38B-203ENST00000370025 MROH2BQ7Z745 1585 aa16.83■□□□□ 0.29
PRPF38B-203ENST00000370025 BICRAQ9NZM4 1560 aa16.81■□□□□ 0.28
PRPF38B-203ENST00000370025 BAZ1AQ9NRL2 1556 aaPredicted RBP16.81■□□□□ 0.28
PRPF38B-203ENST00000370025 PABPN1Q86U42 306 aaKnown RBP eCLIP16.81■□□□□ 0.28
PRPF38B-203ENST00000370025 CHIC1Q5VXU3 224 aa16.72■□□□□ 0.27
PRPF38B-203ENST00000370025 WIZO95785 1651 aa16.71■□□□□ 0.27
PRPF38B-203ENST00000370025 SMARCA4P51532 1647 aa16.69■□□□□ 0.26
PRPF38B-203ENST00000370025 TOP2AP11388 1531 aaKnown RBP16.53■□□□□ 0.24
PRPF38B-203ENST00000370025 PEG3Q9GZU2 1588 aa16.46■□□□□ 0.22
PRPF38B-203ENST00000370025 SMARCA2P51531 1590 aa16.39■□□□□ 0.21
PRPF38B-203ENST00000370025 ATAD2BQ9ULI0 1458 aa16.39■□□□□ 0.21
PRPF38B-203ENST00000370025 CCDC88BA6NC98 1476 aa16.38■□□□□ 0.21
PRPF38B-203ENST00000370025 PPARGC1BQ86YN6 1023 aaKnown RBP16.35■□□□□ 0.21
PRPF38B-203ENST00000370025 TRIM41Q8WV44 630 aa16.35■□□□□ 0.21
PRPF38B-203ENST00000370025 BAZ1BQ9UIG0 1483 aaKnown RBP16.33■□□□□ 0.2
PRPF38B-203ENST00000370025 EIF4G1Q04637 1599 aaKnown RBP16.32■□□□□ 0.2
PRPF38B-203ENST00000370025 HRCP23327 699 aa16.32■□□□□ 0.2
PRPF38B-203ENST00000370025 PCGF6Q9BYE7 350 aa16.21■□□□□ 0.19
PRPF38B-203ENST00000370025 NCAPD3P42695 1498 aa16.21■□□□□ 0.19
PRPF38B-203ENST00000370025 HMGXB3Q12766 1538 aa16.19■□□□□ 0.18
PRPF38B-203ENST00000370025 LOC105371045A0A1W2PR82 267 aa16.11■□□□□ 0.17
PRPF38B-203ENST00000370025 ABCC8Q09428 1581 aa16.1■□□□□ 0.17
PRPF38B-203ENST00000370025 FAM9AQ8IZU1 332 aaPredicted RBP16.07■□□□□ 0.16
PRPF38B-203ENST00000370025 CC2D2AQ9P2K1 1620 aa16.04■□□□□ 0.16
PRPF38B-203ENST00000370025 EHMT2Q96KQ7 1210 aa16.03■□□□□ 0.16
PRPF38B-203ENST00000370025 WRNQ14191 1432 aaPredicted RBP eCLIP15.99■□□□□ 0.15
PRPF38B-203ENST00000370025 CFTRP13569 1480 aa15.9■□□□□ 0.14
PRPF38B-203ENST00000370025 PELP1Q8IZL8 1130 aaKnown RBP15.88■□□□□ 0.13
PRPF38B-203ENST00000370025 SYNJ1O43426 1573 aa15.88■□□□□ 0.13
PRPF38B-203ENST00000370025 EEA1Q15075 1411 aa15.86■□□□□ 0.13
PRPF38B-203ENST00000370025 SOGA1O94964 1423 aa15.84■□□□□ 0.13
PRPF38B-203ENST00000370025 CADPSQ9ULU8 1353 aa15.83■□□□□ 0.13
PRPF38B-203ENST00000370025 PRDM2Q13029 1718 aa15.81■□□□□ 0.12
PRPF38B-203ENST00000370025 TOP2BQ02880 1626 aa15.81■□□□□ 0.12
PRPF38B-203ENST00000370025 CSRNP3Q8WYN3 585 aa15.79■□□□□ 0.12
PRPF38B-203ENST00000370025 BIVM-ERCC5R4GMW8 1640 aa15.78■□□□□ 0.12
PRPF38B-203ENST00000370025 RUSC2Q8N2Y8 1516 aa15.76■□□□□ 0.11
PRPF38B-203ENST00000370025 CUX1P39880 1505 aa15.72■□□□□ 0.11
PRPF38B-203ENST00000370025 SCAF1Q9H7N4 1312 aaKnown RBP15.7■□□□□ 0.1
PRPF38B-203ENST00000370025 FANCD2Q9BXW9 1451 aa15.65■□□□□ 0.1
PRPF38B-203ENST00000370025 GOLGA3Q08378 1498 aa15.65■□□□□ 0.1
PRPF38B-203ENST00000370025 UBTFP17480 764 aaKnown RBP15.65■□□□□ 0.1
PRPF38B-203ENST00000370025 TNIKQ9UKE5 1360 aa15.64■□□□□ 0.09
PRPF38B-203ENST00000370025 CEP164Q9UPV0 1460 aa15.63■□□□□ 0.09
PRPF38B-203ENST00000370025 LAMC3Q9Y6N6 1575 aa15.63■□□□□ 0.09
PRPF38B-203ENST00000370025 NESP48681 1621 aa15.62■□□□□ 0.09
PRPF38B-203ENST00000370025 KIF21BO75037 1637 aa15.61■□□□□ 0.09
PRPF38B-203ENST00000370025 DNAJC5BQ9UF47 199 aa15.58■□□□□ 0.09
PRPF38B-203ENST00000370025 KIF27Q86VH2 1401 aa15.58■□□□□ 0.09
PRPF38B-203ENST00000370025 CEP162Q5TB80 1403 aa15.57■□□□□ 0.08
PRPF38B-203ENST00000370025 PDS5BQ9NTI5 1447 aa15.54■□□□□ 0.08
PRPF38B-203ENST00000370025 FGD5Q6ZNL6 1462 aa15.54■□□□□ 0.08
PRPF38B-203ENST00000370025 TRIM26Q12899 539 aaPredicted RBP15.53■□□□□ 0.08
PRPF38B-203ENST00000370025 DNMBPQ6XZF7 1577 aa15.53■□□□□ 0.08
PRPF38B-203ENST00000370025 RAPGEF2Q9Y4G8 1499 aa15.51■□□□□ 0.07
PRPF38B-203ENST00000370025 CUX2O14529 1486 aa15.5■□□□□ 0.07
PRPF38B-203ENST00000370025 TOPBP1Q92547 1522 aa15.5■□□□□ 0.07
PRPF38B-203ENST00000370025 PRXQ9BXM0 1461 aa15.48■□□□□ 0.07
PRPF38B-203ENST00000370025 ERICH3Q5RHP9 1530 aa15.48■□□□□ 0.07
PRPF38B-203ENST00000370025 TTBK1Q5TCY1 1321 aaPredicted RBP15.46■□□□□ 0.06
PRPF38B-203ENST00000370025 POLA1P09884 1462 aaPredicted RBP15.43■□□□□ 0.06
PRPF38B-203ENST00000370025 URB2Q14146 1524 aaKnown RBP15.43■□□□□ 0.06
PRPF38B-203ENST00000370025 KIF21AQ7Z4S6 1674 aa15.42■□□□□ 0.06
PRPF38B-203ENST00000370025 CLIP1P30622 1438 aa15.42■□□□□ 0.06
PRPF38B-203ENST00000370025 IGF1RP08069 1367 aa15.41■□□□□ 0.06
PRPF38B-203ENST00000370025 RAD54L2Q9Y4B4 1467 aa15.4■□□□□ 0.06
PRPF38B-203ENST00000370025 ABCA10Q8WWZ4 1543 aa15.4■□□□□ 0.06
PRPF38B-203ENST00000370025 CARMIL1Q5VZK9 1371 aa15.36■□□□□ 0.05
PRPF38B-203ENST00000370025 RANGAP1P46060 587 aaPredicted RBP15.35■□□□□ 0.05
PRPF38B-203ENST00000370025 MRC2Q9UBG0 1479 aa15.31■□□□□ 0.04
PRPF38B-203ENST00000370025 VPS8Q8N3P4 1428 aa15.29■□□□□ 0.04
PRPF38B-203ENST00000370025 WDR97A6NE52 1622 aa15.29■□□□□ 0.04
PRPF38B-203ENST00000370025 CUL7Q14999 1698 aa15.26■□□□□ 0.03
PRPF38B-203ENST00000370025 TDRD9Q8NDG6 1382 aaKnown RBP15.26■□□□□ 0.03
PRPF38B-203ENST00000370025 APLP2Q06481 763 aa15.25■□□□□ 0.03
PRPF38B-203ENST00000370025 GAPVD1Q14C86 1478 aa15.24■□□□□ 0.03
PRPF38B-203ENST00000370025 NEUROD1Q13562 356 aa15.24■□□□□ 0.03
PRPF38B-203ENST00000370025 ABCA5Q8WWZ7 1642 aa15.23■□□□□ 0.03
PRPF38B-203ENST00000370025 GTF3C3Q9Y5Q9 886 aa15.23■□□□□ 0.03
PRPF38B-203ENST00000370025 MYT1Q01538 1121 aa15.23■□□□□ 0.03
PRPF38B-203ENST00000370025 ERCC6Q03468 1493 aa15.23■□□□□ 0.03
PRPF38B-203ENST00000370025 TARBP1Q13395 1621 aaKnown RBP15.22■□□□□ 0.03
PRPF38B-203ENST00000370025 ARAP1Q96P48 1450 aa15.2■□□□□ 0.02
PRPF38B-203ENST00000370025 WDR62O43379 1518 aa15.19■□□□□ 0.02
PRPF38B-203ENST00000370025 ARHGAP35Q9NRY4 1499 aa15.18■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms