Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 TARDBP-202ENST00000315091 1835 ntTSL 5 BASIC14.15□□□□□ -0.143e-13■□□□□ 8.3
DDX55Q8NHQ9 TARDBP-221ENST00000619555 682 ntTSL 513.94□□□□□ -0.183e-13■□□□□ 8.3
DDX55Q8NHQ9 TARDBP-223ENST00000620632 706 ntTSL 313.05□□□□□ -0.323e-13■□□□□ 8.3
DDX55Q8NHQ9 TARDBP-206ENST00000473869 1946 ntTSL 512.37□□□□□ -0.433e-13■□□□□ 8.3
DDX55Q8NHQ9 TARDBP-211ENST00000610369 563 ntTSL 511.97□□□□□ -0.493e-13■□□□□ 8.3
DDX55Q8NHQ9 PPP1R11-202ENST00000376763 1464 ntTSL 3 BASIC11.64□□□□□ -0.553e-13■□□□□ 8.3
DDX55Q8NHQ9 PPP1R11-203ENST00000376765 1536 ntTSL 3 BASIC11.3□□□□□ -0.63e-13■□□□□ 8.3
DDX55Q8NHQ9 TARDBP-222ENST00000620505 657 ntTSL 510.96□□□□□ -0.653e-13■□□□□ 8.3
DDX55Q8NHQ9 AL109811.4-201ENST00000614757 1793 ntTSL 5 BASIC10.9□□□□□ -0.673e-13■□□□□ 8.3
DDX55Q8NHQ9 TARDBP-224ENST00000621573 992 ntTSL 39.65□□□□□ -0.863e-13■□□□□ 8.3
DDX55Q8NHQ9 TARDBP-219ENST00000617757 434 ntTSL 39.43□□□□□ -0.93e-13■□□□□ 8.3
DDX55Q8NHQ9 TARDBP-213ENST00000611963 739 ntTSL 59.28□□□□□ -0.923e-13■□□□□ 8.3
DDX55Q8NHQ9 TARDBP-216ENST00000614494 515 ntTSL 59.02□□□□□ -0.973e-13■□□□□ 8.3
DDX55Q8NHQ9 PPP1R11-206ENST00000376773 1640 ntTSL 3 BASIC8.23□□□□□ -1.093e-13■□□□□ 8.3
DDX55Q8NHQ9 TARDBP-210ENST00000496840 692 ntTSL 38.11□□□□□ -1.113e-13■□□□□ 8.3
DDX55Q8NHQ9 PPP1R11-201ENST00000376758 1723 ntTSL 2 BASIC6.86□□□□□ -1.313e-13■□□□□ 8.3
DDX55Q8NHQ9 AL109811.4-204ENST00000622108 645 ntTSL 55.84□□□□□ -1.473e-13■□□□□ 8.3
DDX55Q8NHQ9 AL109811.4-202ENST00000611136 700 ntTSL 55.34□□□□□ -1.553e-13■□□□□ 8.3
DDX55Q8NHQ9 TARDBP-214ENST00000613177 379 ntTSL 35.3□□□□□ -1.563e-13■□□□□ 8.3
DDX55Q8NHQ9 TARDBP-212ENST00000611008 929 ntTSL 54.58□□□□□ -1.683e-13■□□□□ 8.3
DDX55Q8NHQ9 TARDBP-208ENST00000477447 409 ntTSL 54.37□□□□□ -1.713e-13■□□□□ 8.3
DDX55Q8NHQ9 AL109811.4-203ENST00000612542 554 ntAPPRIS P1 TSL 54.37□□□□□ -1.713e-13■□□□□ 8.3
DDX55Q8NHQ9 HDLBP-220ENST00000442730 683 ntTSL 227.17■■□□□ 1.947e-10■□□□□ 8.3
DDX55Q8NHQ9 BET1L-204ENST00000410108 637 ntTSL 3 BASIC25.19■■□□□ 1.627e-10■□□□□ 8.3
DDX55Q8NHQ9 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.517e-10■□□□□ 8.3
DDX55Q8NHQ9 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC17.05■□□□□ 0.327e-10■□□□□ 8.3
DDX55Q8NHQ9 HDLBP-240ENST00000484412 669 ntTSL 516.9■□□□□ 0.37e-10■□□□□ 8.3
DDX55Q8NHQ9 HDLBP-241ENST00000487169 4339 ntTSL 214.26□□□□□ -0.137e-10■□□□□ 8.3
DDX55Q8NHQ9 HDLBP-214ENST00000427183 6238 ntTSL 2 BASIC14.01□□□□□ -0.177e-10■□□□□ 8.3
DDX55Q8NHQ9 HDLBP-204ENST00000391976 4489 ntAPPRIS P1 TSL 5 BASIC13.94□□□□□ -0.187e-10■□□□□ 8.3
DDX55Q8NHQ9 HDLBP-245ENST00000494862 356 ntTSL 212.98□□□□□ -0.337e-10■□□□□ 8.3
DDX55Q8NHQ9 HDLBP-203ENST00000391975 6372 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.357e-10■□□□□ 8.3
DDX55Q8NHQ9 HDLBP-202ENST00000373292 3297 ntTSL 512.5□□□□□ -0.417e-10■□□□□ 8.3
DDX55Q8NHQ9 HDLBP-201ENST00000310931 4571 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.77e-10■□□□□ 8.3
DDX55Q8NHQ9 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC23.48■■□□□ 1.358e-12■□□□□ 8.3
DDX55Q8NHQ9 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.798e-12■□□□□ 8.3
DDX55Q8NHQ9 ATP6V0E1-201ENST00000265093 773 ntTSL 2 BASIC7.92□□□□□ -1.148e-12■□□□□ 8.3
DDX55Q8NHQ9 PFKFB4-201ENST00000232375 3586 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.163e-20■□□□□ 8.3
DDX55Q8NHQ9 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.242e-7■□□□□ 8.3
DDX55Q8NHQ9 ILF3-201ENST00000250241 3035 ntTSL 1 (best) BASIC13.84□□□□□ -0.192e-7■□□□□ 8.3
DDX55Q8NHQ9 ILF3-202ENST00000407004 3671 ntTSL 1 (best) BASIC13.27□□□□□ -0.292e-7■□□□□ 8.3
DDX55Q8NHQ9 ILF3-222ENST00000592763 3866 ntTSL 5 BASIC11.89□□□□□ -0.512e-7■□□□□ 8.3
DDX55Q8NHQ9 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.812e-15■□□□□ 8.3
DDX55Q8NHQ9 TALDO1-203ENST00000528097 1231 ntTSL 1 (best) BASIC17.74■□□□□ 0.432e-15■□□□□ 8.3
DDX55Q8NHQ9 TALDO1-205ENST00000530440 710 ntTSL 314.13□□□□□ -0.152e-15■□□□□ 8.3
DDX55Q8NHQ9 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC24.43■■□□□ 1.53e-10■□□□□ 8.3
DDX55Q8NHQ9 NARF-205ENST00000412079 1760 ntTSL 5 BASIC24.39■■□□□ 1.493e-10■□□□□ 8.3
DDX55Q8NHQ9 NARF-204ENST00000390006 1766 ntTSL 2 BASIC21.43■■□□□ 1.023e-10■□□□□ 8.3
DDX55Q8NHQ9 NARF-203ENST00000374611 1722 ntTSL 519.96■□□□□ 0.793e-10■□□□□ 8.3
DDX55Q8NHQ9 NARF-206ENST00000457415 1668 ntTSL 5 BASIC19.75■□□□□ 0.753e-10■□□□□ 8.3
DDX55Q8NHQ9 NARF-211ENST00000578820 625 ntTSL 313.59□□□□□ -0.233e-10■□□□□ 8.3
DDX55Q8NHQ9 NARF-201ENST00000309794 3949 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.283e-10■□□□□ 8.3
DDX55Q8NHQ9 NARF-225ENST00000584445 2484 ntTSL 212.83□□□□□ -0.363e-10■□□□□ 8.3
DDX55Q8NHQ9 NARF-209ENST00000577812 2598 ntTSL 512.51□□□□□ -0.413e-10■□□□□ 8.3
DDX55Q8NHQ9 NARF-222ENST00000583908 430 ntTSL 311.93□□□□□ -0.53e-10■□□□□ 8.3
DDX55Q8NHQ9 NARF-227ENST00000584965 300 ntTSL 310.53□□□□□ -0.723e-10■□□□□ 8.3
DDX55Q8NHQ9 SRSF5-212ENST00000556184 2443 ntTSL 1 (best)11.16□□□□□ -0.622e-25■□□□□ 8.3
DDX55Q8NHQ9 SRSF5-211ENST00000555547 2057 ntTSL 59.77□□□□□ -0.852e-25■□□□□ 8.3
DDX55Q8NHQ9 HPN-208ENST00000600390 564 ntTSL 423.67■■□□□ 1.382e-14■□□□□ 8.3
DDX55Q8NHQ9 PPP2CB-204ENST00000518564 691 ntTSL 3 BASIC38.67■■■■□ 3.782e-6■□□□□ 8.3
DDX55Q8NHQ9 PPP2CB-201ENST00000221138 2006 ntAPPRIS P1 TSL 1 (best) BASIC32.87■■■□□ 2.852e-6■□□□□ 8.3
DDX55Q8NHQ9 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC30.62■■■□□ 2.492e-6■□□□□ 8.3
DDX55Q8NHQ9 PIN1-211ENST00000592184 517 ntTSL 229.71■■■□□ 2.352e-6■□□□□ 8.3
DDX55Q8NHQ9 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC29.58■■■□□ 2.332e-6■□□□□ 8.3
DDX55Q8NHQ9 SSNA1-203ENST00000463511 570 ntTSL 229.11■■■□□ 2.252e-6■□□□□ 8.3
DDX55Q8NHQ9 UBE2J2-210ENST00000464036 1256 ntTSL 328.64■■■□□ 2.182e-6■□□□□ 8.3
DDX55Q8NHQ9 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC28.52■■■□□ 2.162e-6■□□□□ 8.3
DDX55Q8NHQ9 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC28.18■■■□□ 2.12e-6■□□□□ 8.3
DDX55Q8NHQ9 RAD51-204ENST00000525066 1545 ntTSL 527.76■■■□□ 2.032e-6■□□□□ 8.3
DDX55Q8NHQ9 CCDC28B-203ENST00000461819 780 ntTSL 527.51■■□□□ 1.992e-6■□□□□ 8.3
DDX55Q8NHQ9 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC26.82■■□□□ 1.882e-6■□□□□ 8.3
DDX55Q8NHQ9 SSNA1-202ENST00000459860 1170 ntTSL 1 (best)26.25■■□□□ 1.792e-6■□□□□ 8.3
DDX55Q8NHQ9 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC26.09■■□□□ 1.772e-6■□□□□ 8.3
DDX55Q8NHQ9 UBE2J2-214ENST00000473215 1028 ntTSL 325.89■■□□□ 1.742e-6■□□□□ 8.3
DDX55Q8NHQ9 RFNG-204ENST00000578676 1078 ntTSL 325.65■■□□□ 1.72e-6■□□□□ 8.3
DDX55Q8NHQ9 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.582e-6■□□□□ 8.3
DDX55Q8NHQ9 MARVELD1-203ENST00000434038 690 ntTSL 324.82■■□□□ 1.562e-6■□□□□ 8.3
DDX55Q8NHQ9 COPE-208ENST00000598969 1770 ntTSL 524.42■■□□□ 1.55e-12■□□□□ 8.3
DDX55Q8NHQ9 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC24.35■■□□□ 1.492e-6■□□□□ 8.3
DDX55Q8NHQ9 UBE2J2-208ENST00000450390 2455 ntTSL 524.04■■□□□ 1.442e-6■□□□□ 8.3
DDX55Q8NHQ9 LRCH4-204ENST00000476881 1675 ntTSL 223.98■■□□□ 1.432e-6■□□□□ 8.3
DDX55Q8NHQ9 LTBP4-239ENST00000622565 756 ntTSL 423.89■■□□□ 1.412e-6■□□□□ 8.3
DDX55Q8NHQ9 IMP4-210ENST00000462392 1793 ntTSL 323.29■■□□□ 1.322e-6■□□□□ 8.3
DDX55Q8NHQ9 PSMD9-204ENST00000537407 1195 ntTSL 1 (best)23.16■■□□□ 1.32e-6■□□□□ 8.3
DDX55Q8NHQ9 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC23.16■■□□□ 1.32e-6■□□□□ 8.3
DDX55Q8NHQ9 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.292e-6■□□□□ 8.3
DDX55Q8NHQ9 COPE-203ENST00000351079 907 ntTSL 2 BASIC23.08■■□□□ 1.295e-12■□□□□ 8.3
DDX55Q8NHQ9 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC22.91■■□□□ 1.262e-6■□□□□ 8.3
DDX55Q8NHQ9 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC22.8■■□□□ 1.245e-12■□□□□ 8.3
DDX55Q8NHQ9 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC22.48■■□□□ 1.192e-6■□□□□ 8.3
DDX55Q8NHQ9 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.195e-12■□□□□ 8.3
DDX55Q8NHQ9 LRCH4-205ENST00000485554 774 ntTSL 322.25■■□□□ 1.152e-6■□□□□ 8.3
DDX55Q8NHQ9 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC21.88■■□□□ 1.092e-6■□□□□ 8.3
DDX55Q8NHQ9 IMP4-208ENST00000460766 2379 ntTSL 1 (best)21.59■■□□□ 1.052e-6■□□□□ 8.3
DDX55Q8NHQ9 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC21.48■■□□□ 1.032e-6■□□□□ 8.3
DDX55Q8NHQ9 PIN1-206ENST00000587625 878 ntTSL 2 BASIC21.47■■□□□ 1.032e-6■□□□□ 8.3
DDX55Q8NHQ9 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC21.25■□□□□ 0.992e-6■□□□□ 8.3
DDX55Q8NHQ9 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC21.07■□□□□ 0.962e-6■□□□□ 8.3
DDX55Q8NHQ9 COPE-211ENST00000600932 1144 ntTSL 5 BASIC20.98■□□□□ 0.955e-12■□□□□ 8.3
DDX55Q8NHQ9 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.922e-6■□□□□ 8.3
Retrieved 100 of 15,504 protein–RNA pairs in 350.6 ms