RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 NISCHQ9Y2I1 1504 aa53.73■■■■■ 6.19
CCDC28B-201ENST00000373602 CCDC180Q9P1Z9 1646 aa47.99■■■■■ 5.27
CCDC28B-201ENST00000373602 ABCC9O60706 1549 aa47.53■■■■■ 5.2
CCDC28B-201ENST00000373602 RB1CC1Q8TDY2 1594 aa45.46■■■■■ 4.87
CCDC28B-201ENST00000373602 NACADO15069 1562 aa45.28■■■■■ 4.84
CCDC28B-201ENST00000373602 DCAF8L2P0C7V8 631 aa45.11■■■■■ 4.81
CCDC28B-201ENST00000373602 MYO15BQ96JP2 1530 aa44.85■■■■■ 4.77
CCDC28B-201ENST00000373602 ZCCHC6Q5VYS8 1495 aaKnown RBP44.64■■■■■ 4.74
CCDC28B-201ENST00000373602 DCAF1Q9Y4B6 1507 aa44.44■■■■■ 4.7
CCDC28B-201ENST00000373602 UNC13AQ9UPW8 1703 aa44.4■■■■■ 4.7
CCDC28B-201ENST00000373602 PABPN1Q86U42 306 aaKnown RBP eCLIP44.33■■■■■ 4.69
CCDC28B-201ENST00000373602 DNAJC5BQ9UF47 199 aa44.19■■■■■ 4.66
CCDC28B-201ENST00000373602 BICRAQ9NZM4 1560 aa44.13■■■■■ 4.65
CCDC28B-201ENST00000373602 SCRIBQ14160 1630 aa43.73■■■■■ 4.59
CCDC28B-201ENST00000373602 SHROOM4Q9ULL8 1493 aa43.61■■■■■ 4.57
CCDC28B-201ENST00000373602 EIF4G1Q04637 1599 aaKnown RBP43■■■■■ 4.47
CCDC28B-201ENST00000373602 CC2D2AQ9P2K1 1620 aa42.97■■■■■ 4.47
CCDC28B-201ENST00000373602 CECR2Q9BXF3 1484 aa42.78■■■■■ 4.44
CCDC28B-201ENST00000373602 NCAPD3P42695 1498 aa41.82■■■■■ 4.29
CCDC28B-201ENST00000373602 SMARCA4P51532 1647 aa41.8■■■■■ 4.28
CCDC28B-201ENST00000373602 ATAD2BQ9ULI0 1458 aa41.74■■■■■ 4.27
CCDC28B-201ENST00000373602 BAZ1AQ9NRL2 1556 aaPredicted RBP41.67■■■■■ 4.26
CCDC28B-201ENST00000373602 SMARCA2P51531 1590 aa41.64■■■■■ 4.26
CCDC28B-201ENST00000373602 HMGXB3Q12766 1538 aa41.54■■■■■ 4.24
CCDC28B-201ENST00000373602 PEG3Q9GZU2 1588 aa41.42■■■■■ 4.22
CCDC28B-201ENST00000373602 MROH2BQ7Z745 1585 aa41.39■■■■■ 4.22
CCDC28B-201ENST00000373602 BAZ1BQ9UIG0 1483 aaKnown RBP41.34■■■■■ 4.21
CCDC28B-201ENST00000373602 ERCC6Q03468 1493 aa41■■■■■ 4.15
CCDC28B-201ENST00000373602 NESP48681 1621 aa40.96■■■■■ 4.15
CCDC28B-201ENST00000373602 WIZO95785 1651 aa40.9■■■■■ 4.14
CCDC28B-201ENST00000373602 CUX2O14529 1486 aa40.8■■■■■ 4.12
CCDC28B-201ENST00000373602 LAMC3Q9Y6N6 1575 aa40.77■■■■■ 4.12
CCDC28B-201ENST00000373602 RSF1Q96T23 1441 aaPredicted RBP40.73■■■■■ 4.11
CCDC28B-201ENST00000373602 CADPSQ9ULU8 1353 aa40.56■■■■■ 4.08
CCDC28B-201ENST00000373602 PDS5BQ9NTI5 1447 aa40.53■■■■■ 4.08
CCDC28B-201ENST00000373602 THOC2Q8NI27 1593 aaKnown RBP40.46■■■■■ 4.07
CCDC28B-201ENST00000373602 TOP2AP11388 1531 aaKnown RBP40.44■■■■■ 4.06
CCDC28B-201ENST00000373602 KIF21AQ7Z4S6 1674 aa40.43■■■■■ 4.06
CCDC28B-201ENST00000373602 DNAJC5Q9H3Z4 198 aa40.25■■■■■ 4.03
CCDC28B-201ENST00000373602 CFTRP13569 1480 aa40.19■■■■■ 4.03
CCDC28B-201ENST00000373602 MRC2Q9UBG0 1479 aa40.15■■■■■ 4.02
CCDC28B-201ENST00000373602 FANCD2Q9BXW9 1451 aa40.08■■■■■ 4.01
CCDC28B-201ENST00000373602 CEP164Q9UPV0 1460 aa40.07■■■■■ 4.01
CCDC28B-201ENST00000373602 WDR62O43379 1518 aa40.04■■■■■ 4
CCDC28B-201ENST00000373602 CCDC88BA6NC98 1476 aa39.99■■■■□ 3.99
CCDC28B-201ENST00000373602 PRDM2Q13029 1718 aa39.79■■■■□ 3.96
CCDC28B-201ENST00000373602 URB2Q14146 1524 aaKnown RBP39.72■■■■□ 3.95
CCDC28B-201ENST00000373602 TOPBP1Q92547 1522 aa39.38■■■■□ 3.89
CCDC28B-201ENST00000373602 ABCC8Q09428 1581 aa39.34■■■■□ 3.89
CCDC28B-201ENST00000373602 DNMBPQ6XZF7 1577 aa39.27■■■■□ 3.88
CCDC28B-201ENST00000373602 IFT140Q96RY7 1462 aa39.27■■■■□ 3.88
CCDC28B-201ENST00000373602 SUPT5HO00267 1087 aaKnown RBP39.24■■■■□ 3.87
CCDC28B-201ENST00000373602 ZNF608Q9ULD9 1512 aaPredicted RBP39.14■■■■□ 3.86
CCDC28B-201ENST00000373602 OSCARQ8IYS5 282 aa39.02■■■■□ 3.84
CCDC28B-201ENST00000373602 POLA1P09884 1462 aaPredicted RBP39■■■■□ 3.83
CCDC28B-201ENST00000373602 TARBP1Q13395 1621 aaKnown RBP38.99■■■■□ 3.83
CCDC28B-201ENST00000373602 EIF4G3O43432 1585 aaKnown RBP38.94■■■■□ 3.82
CCDC28B-201ENST00000373602 CUX1P39880 1505 aa38.87■■■■□ 3.81
CCDC28B-201ENST00000373602 AQRO60306 1485 aaKnown RBP eCLIP38.86■■■■□ 3.813e-7■■■□□ 17
CCDC28B-201ENST00000373602 RAD54L2Q9Y4B4 1467 aa38.85■■■■□ 3.81
CCDC28B-201ENST00000373602 SOGA1O94964 1423 aa38.84■■■■□ 3.81
CCDC28B-201ENST00000373602 FGD5Q6ZNL6 1462 aa38.82■■■■□ 3.81
CCDC28B-201ENST00000373602 TDRD9Q8NDG6 1382 aaKnown RBP38.69■■■■□ 3.78
CCDC28B-201ENST00000373602 WDR97A6NE52 1622 aa38.64■■■■□ 3.78
CCDC28B-201ENST00000373602 TRIM41Q8WV44 630 aa38.63■■■■□ 3.77
CCDC28B-201ENST00000373602 CHD1O14646 1710 aa38.55■■■■□ 3.76
CCDC28B-201ENST00000373602 FBLN2P98095 1184 aa38.48■■■■□ 3.75
CCDC28B-201ENST00000373602 SNAPC4Q5SXM2 1469 aa38.47■■■■□ 3.75
CCDC28B-201ENST00000373602 GRIN2BQ13224 1484 aa38.45■■■■□ 3.75
CCDC28B-201ENST00000373602 ABCA10Q8WWZ4 1543 aa38.43■■■■□ 3.74
CCDC28B-201ENST00000373602 RIMBP3CA6NJZ7 1639 aa38.42■■■■□ 3.74
CCDC28B-201ENST00000373602 RIMBP3BA6NNM3 1639 aa38.42■■■■□ 3.74
CCDC28B-201ENST00000373602 RIMBP3Q9UFD9 1639 aa38.42■■■■□ 3.74
CCDC28B-201ENST00000373602 MAGI1Q96QZ7 1491 aaPredicted RBP38.41■■■■□ 3.74
CCDC28B-201ENST00000373602 WRNQ14191 1432 aaPredicted RBP eCLIP38.4■■■■□ 3.74
CCDC28B-201ENST00000373602 GAPVD1Q14C86 1478 aa38.38■■■■□ 3.73
CCDC28B-201ENST00000373602 TOP2BQ02880 1626 aa38.37■■■■□ 3.73
CCDC28B-201ENST00000373602 BIVM-ERCC5R4GMW8 1640 aa38.37■■■■□ 3.73
CCDC28B-201ENST00000373602 ARHGEF11O15085 1522 aa38.37■■■■□ 3.73
CCDC28B-201ENST00000373602 SYNJ1O43426 1573 aa38.33■■■■□ 3.73
CCDC28B-201ENST00000373602 ABCA5Q8WWZ7 1642 aa38.3■■■■□ 3.72
CCDC28B-201ENST00000373602 CHMP7Q8WUX9 453 aaPredicted RBP38.3■■■■□ 3.72
CCDC28B-201ENST00000373602 PBRM1Q86U86 1689 aa38.29■■■■□ 3.72
CCDC28B-201ENST00000373602 SYNJ2O15056 1496 aa38.27■■■■□ 3.72
CCDC28B-201ENST00000373602 CLASP1Q7Z460 1538 aa38.16■■■■□ 3.7
CCDC28B-201ENST00000373602 CYB5RLQ6IPT4 315 aa38.06■■■■□ 3.68
CCDC28B-201ENST00000373602 ARAP1Q96P48 1450 aa38.03■■■■□ 3.68
CCDC28B-201ENST00000373602 ADAMTS12P58397 1594 aa37.98■■■■□ 3.67
CCDC28B-201ENST00000373602 GRIN2AQ12879 1464 aa37.96■■■■□ 3.67
CCDC28B-201ENST00000373602 ERICH3Q5RHP9 1530 aa37.95■■■■□ 3.67
CCDC28B-201ENST00000373602 FHAD1B1AJZ9 1412 aa37.92■■■■□ 3.66
CCDC28B-201ENST00000373602 NUP160Q12769 1436 aa37.83■■■■□ 3.65
CCDC28B-201ENST00000373602 CEP170Q5SW79 1584 aa37.78■■■■□ 3.64
CCDC28B-201ENST00000373602 KIF27Q86VH2 1401 aa37.65■■■■□ 3.62
CCDC28B-201ENST00000373602 IGF1RP08069 1367 aa37.59■■■■□ 3.61
CCDC28B-201ENST00000373602 SHROOM2Q13796 1616 aa37.58■■■■□ 3.61
CCDC28B-201ENST00000373602 ERCC6L2Q5T890 1561 aa37.58■■■■□ 3.61
CCDC28B-201ENST00000373602 CUL7Q14999 1698 aa37.47■■■■□ 3.59
CCDC28B-201ENST00000373602 TRHP20396 242 aaPredicted RBP37.46■■■■□ 3.59
CCDC28B-201ENST00000373602 RUSC2Q8N2Y8 1516 aa37.43■■■■□ 3.58
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms