RNA–Protein interactions for RNA: ENST00000459860.1

SSNA1-202, Transcript of SS nuclear autoantigen 1, humanhuman

TSL 1 (best)

Gene SSNA1, Length 1,170 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSNA1-202ENST00000459860 NISCHQ9Y2I1 1504 aa52.57■■■■■ 6.01
SSNA1-202ENST00000459860 ABCC9O60706 1549 aa46.83■■■■■ 5.09
SSNA1-202ENST00000459860 CCDC180Q9P1Z9 1646 aa46.83■■■■■ 5.09
SSNA1-202ENST00000459860 RB1CC1Q8TDY2 1594 aa44.46■■■■■ 4.71
SSNA1-202ENST00000459860 NACADO15069 1562 aa44.18■■■■■ 4.66
SSNA1-202ENST00000459860 DNAJC5BQ9UF47 199 aa44.17■■■■■ 4.66
SSNA1-202ENST00000459860 DCAF8L2P0C7V8 631 aa43.94■■■■■ 4.62
SSNA1-202ENST00000459860 ZCCHC6Q5VYS8 1495 aaKnown RBP43.83■■■■■ 4.61
SSNA1-202ENST00000459860 MYO15BQ96JP2 1530 aa43.68■■■■■ 4.58
SSNA1-202ENST00000459860 PABPN1Q86U42 306 aaKnown RBP eCLIP43.65■■■■■ 4.58
SSNA1-202ENST00000459860 DCAF1Q9Y4B6 1507 aa43.53■■■■■ 4.56
SSNA1-202ENST00000459860 UNC13AQ9UPW8 1703 aa43.32■■■■■ 4.53
SSNA1-202ENST00000459860 BICRAQ9NZM4 1560 aa43.26■■■■■ 4.52
SSNA1-202ENST00000459860 SCRIBQ14160 1630 aa42.68■■■■■ 4.42
SSNA1-202ENST00000459860 SHROOM4Q9ULL8 1493 aa42.65■■■■■ 4.42
SSNA1-202ENST00000459860 CC2D2AQ9P2K1 1620 aa42.25■■■■■ 4.35
SSNA1-202ENST00000459860 CECR2Q9BXF3 1484 aa42.21■■■■■ 4.35
SSNA1-202ENST00000459860 EIF4G1Q04637 1599 aaKnown RBP42.17■■■■■ 4.34
SSNA1-202ENST00000459860 NCAPD3P42695 1498 aa40.89■■■■■ 4.14
SSNA1-202ENST00000459860 SMARCA4P51532 1647 aa40.82■■■■■ 4.13
SSNA1-202ENST00000459860 BAZ1AQ9NRL2 1556 aaPredicted RBP40.81■■■■■ 4.12
SSNA1-202ENST00000459860 ATAD2BQ9ULI0 1458 aa40.73■■■■■ 4.11
SSNA1-202ENST00000459860 DNAJC5Q9H3Z4 198 aa40.57■■■■■ 4.09
SSNA1-202ENST00000459860 SMARCA2P51531 1590 aa40.56■■■■■ 4.08
SSNA1-202ENST00000459860 MROH2BQ7Z745 1585 aa40.49■■■■■ 4.07
SSNA1-202ENST00000459860 HMGXB3Q12766 1538 aa40.48■■■■■ 4.07
SSNA1-202ENST00000459860 PEG3Q9GZU2 1588 aa40.4■■■■■ 4.06
SSNA1-202ENST00000459860 CUX2O14529 1486 aa40.39■■■■■ 4.06
SSNA1-202ENST00000459860 ERCC6Q03468 1493 aa40.38■■■■■ 4.05
SSNA1-202ENST00000459860 BAZ1BQ9UIG0 1483 aaKnown RBP40.26■■■■■ 4.03
SSNA1-202ENST00000459860 NESP48681 1621 aa40.23■■■■■ 4.03
SSNA1-202ENST00000459860 WIZO95785 1651 aa40.11■■■■■ 4.01
SSNA1-202ENST00000459860 RSF1Q96T23 1441 aaPredicted RBP40.04■■■■■ 4
SSNA1-202ENST00000459860 LAMC3Q9Y6N6 1575 aa39.85■■■■□ 3.97
SSNA1-202ENST00000459860 THOC2Q8NI27 1593 aaKnown RBP39.77■■■■□ 3.96
SSNA1-202ENST00000459860 TOP2AP11388 1531 aaKnown RBP39.71■■■■□ 3.95
SSNA1-202ENST00000459860 PDS5BQ9NTI5 1447 aa39.69■■■■□ 3.94
SSNA1-202ENST00000459860 CADPSQ9ULU8 1353 aa39.63■■■■□ 3.93
SSNA1-202ENST00000459860 KIF21AQ7Z4S6 1674 aa39.54■■■■□ 3.92
SSNA1-202ENST00000459860 MRC2Q9UBG0 1479 aa39.35■■■■□ 3.89
SSNA1-202ENST00000459860 WDR62O43379 1518 aa39.25■■■■□ 3.87
SSNA1-202ENST00000459860 CCDC88BA6NC98 1476 aa39.17■■■■□ 3.86
SSNA1-202ENST00000459860 CFTRP13569 1480 aa39.15■■■■□ 3.86
SSNA1-202ENST00000459860 CEP164Q9UPV0 1460 aa39.14■■■■□ 3.86
SSNA1-202ENST00000459860 FANCD2Q9BXW9 1451 aa39.12■■■■□ 3.85
SSNA1-202ENST00000459860 SUPT5HO00267 1087 aaKnown RBP39.11■■■■□ 3.85
SSNA1-202ENST00000459860 PRDM2Q13029 1718 aa39■■■■□ 3.83
SSNA1-202ENST00000459860 URB2Q14146 1524 aaKnown RBP38.84■■■■□ 3.81
SSNA1-202ENST00000459860 TRIM41Q8WV44 630 aa38.66■■■■□ 3.78
SSNA1-202ENST00000459860 OSCARQ8IYS5 282 aa38.57■■■■□ 3.76
SSNA1-202ENST00000459860 IFT140Q96RY7 1462 aa38.4■■■■□ 3.74
SSNA1-202ENST00000459860 ZNF608Q9ULD9 1512 aaPredicted RBP38.38■■■■□ 3.74
SSNA1-202ENST00000459860 TOPBP1Q92547 1522 aa38.38■■■■□ 3.73
SSNA1-202ENST00000459860 ABCC8Q09428 1581 aa38.33■■■■□ 3.73
SSNA1-202ENST00000459860 DNMBPQ6XZF7 1577 aa38.28■■■■□ 3.72
SSNA1-202ENST00000459860 EIF4G3O43432 1585 aaKnown RBP38.06■■■■□ 3.68
SSNA1-202ENST00000459860 AQRO60306 1485 aaKnown RBP eCLIP38.03■■■■□ 3.68
SSNA1-202ENST00000459860 TARBP1Q13395 1621 aaKnown RBP38.01■■■■□ 3.68
SSNA1-202ENST00000459860 CUX1P39880 1505 aa38■■■■□ 3.67
SSNA1-202ENST00000459860 POLA1P09884 1462 aaPredicted RBP37.99■■■■□ 3.67
SSNA1-202ENST00000459860 RIMBP3CA6NJZ7 1639 aa37.98■■■■□ 3.67
SSNA1-202ENST00000459860 RIMBP3BA6NNM3 1639 aa37.98■■■■□ 3.67
SSNA1-202ENST00000459860 RIMBP3Q9UFD9 1639 aa37.98■■■■□ 3.67
SSNA1-202ENST00000459860 ARHGEF11O15085 1522 aa37.92■■■■□ 3.66
SSNA1-202ENST00000459860 FGD5Q6ZNL6 1462 aa37.88■■■■□ 3.65
SSNA1-202ENST00000459860 RAD54L2Q9Y4B4 1467 aa37.87■■■■□ 3.65
SSNA1-202ENST00000459860 SOGA1O94964 1423 aa37.82■■■■□ 3.64
SSNA1-202ENST00000459860 WRNQ14191 1432 aaPredicted RBP eCLIP37.81■■■■□ 3.64
SSNA1-202ENST00000459860 TDRD9Q8NDG6 1382 aaKnown RBP37.79■■■■□ 3.64
SSNA1-202ENST00000459860 BIVM-ERCC5R4GMW8 1640 aa37.77■■■■□ 3.64
SSNA1-202ENST00000459860 TOP2BQ02880 1626 aa37.76■■■■□ 3.63
SSNA1-202ENST00000459860 FBLN2P98095 1184 aa37.73■■■■□ 3.63
SSNA1-202ENST00000459860 SYNJ1O43426 1573 aa37.72■■■■□ 3.63
SSNA1-202ENST00000459860 CHD1O14646 1710 aa37.7■■■■□ 3.63
SSNA1-202ENST00000459860 CYB5RLQ6IPT4 315 aa37.67■■■■□ 3.62
SSNA1-202ENST00000459860 WDR97A6NE52 1622 aa37.65■■■■□ 3.62
SSNA1-202ENST00000459860 SNAPC4Q5SXM2 1469 aa37.59■■■■□ 3.61
SSNA1-202ENST00000459860 ARAP1Q96P48 1450 aa37.58■■■■□ 3.61
SSNA1-202ENST00000459860 ABCA10Q8WWZ4 1543 aa37.51■■■■□ 3.6
SSNA1-202ENST00000459860 GRIN2BQ13224 1484 aa37.48■■■■□ 3.59
SSNA1-202ENST00000459860 MAGI1Q96QZ7 1491 aaPredicted RBP37.48■■■■□ 3.59
SSNA1-202ENST00000459860 CHMP7Q8WUX9 453 aaPredicted RBP37.46■■■■□ 3.59
SSNA1-202ENST00000459860 CLASP1Q7Z460 1538 aa37.43■■■■□ 3.58
SSNA1-202ENST00000459860 PBRM1Q86U86 1689 aa37.4■■■■□ 3.58
SSNA1-202ENST00000459860 ABCA5Q8WWZ7 1642 aa37.39■■■■□ 3.58
SSNA1-202ENST00000459860 SYNJ2O15056 1496 aa37.38■■■■□ 3.57
SSNA1-202ENST00000459860 GAPVD1Q14C86 1478 aa37.37■■■■□ 3.57
SSNA1-202ENST00000459860 TRHP20396 242 aaPredicted RBP37.22■■■■□ 3.55
SSNA1-202ENST00000459860 ERICH3Q5RHP9 1530 aa37.1■■■■□ 3.53
SSNA1-202ENST00000459860 ADAMTS12P58397 1594 aa37.04■■■■□ 3.52
SSNA1-202ENST00000459860 KIF27Q86VH2 1401 aa37.03■■■■□ 3.52
SSNA1-202ENST00000459860 GRIN2AQ12879 1464 aa37■■■■□ 3.51
SSNA1-202ENST00000459860 FHAD1B1AJZ9 1412 aa36.94■■■■□ 3.5
SSNA1-202ENST00000459860 NUP160Q12769 1436 aa36.93■■■■□ 3.5
SSNA1-202ENST00000459860 CEP170Q5SW79 1584 aa36.86■■■■□ 3.49
SSNA1-202ENST00000459860 ERCC6L2Q5T890 1561 aa36.86■■■■□ 3.49
SSNA1-202ENST00000459860 CUL7Q14999 1698 aa36.86■■■■□ 3.49
SSNA1-202ENST00000459860 IGF1RP08069 1367 aa36.77■■■■□ 3.48
SSNA1-202ENST00000459860 SHROOM2Q13796 1616 aa36.69■■■■□ 3.46
SSNA1-202ENST00000459860 RUSC2Q8N2Y8 1516 aa36.62■■■■□ 3.45
Retrieved 100 of 20,778 RNA–protein pairs in 175.8 ms