RNA–Protein interactions for RNA: ENST00000322310.9

SSNA1-201, Transcript of SS nuclear autoantigen 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SSNA1, Length 896 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSNA1-201ENST00000322310 NISCHQ9Y2I1 1504 aa49.96■■■■■ 5.59
SSNA1-201ENST00000322310 ABCC9O60706 1549 aa45.65■■■■■ 4.9
SSNA1-201ENST00000322310 CCDC180Q9P1Z9 1646 aa45.01■■■■■ 4.8
SSNA1-201ENST00000322310 DNAJC5BQ9UF47 199 aa43.33■■■■■ 4.53
SSNA1-201ENST00000322310 RB1CC1Q8TDY2 1594 aa43.13■■■■■ 4.5
SSNA1-201ENST00000322310 NACADO15069 1562 aa42.69■■■■■ 4.43
SSNA1-201ENST00000322310 DCAF8L2P0C7V8 631 aa42.46■■■■■ 4.39
SSNA1-201ENST00000322310 PABPN1Q86U42 306 aaKnown RBP eCLIP42.44■■■■■ 4.38
SSNA1-201ENST00000322310 UNC13AQ9UPW8 1703 aa42.17■■■■■ 4.34
SSNA1-201ENST00000322310 BICRAQ9NZM4 1560 aa41.95■■■■■ 4.31
SSNA1-201ENST00000322310 MYO15BQ96JP2 1530 aa41.9■■■■■ 4.3
SSNA1-201ENST00000322310 ZCCHC6Q5VYS8 1495 aaKnown RBP41.3■■■■■ 4.2
SSNA1-201ENST00000322310 SHROOM4Q9ULL8 1493 aa41.23■■■■■ 4.19
SSNA1-201ENST00000322310 CC2D2AQ9P2K1 1620 aa41.18■■■■■ 4.18
SSNA1-201ENST00000322310 DCAF1Q9Y4B6 1507 aa41.18■■■■■ 4.18
SSNA1-201ENST00000322310 CECR2Q9BXF3 1484 aa41.15■■■■■ 4.18
SSNA1-201ENST00000322310 SCRIBQ14160 1630 aa41.08■■■■■ 4.17
SSNA1-201ENST00000322310 EIF4G1Q04637 1599 aaKnown RBP40.95■■■■■ 4.15
SSNA1-201ENST00000322310 DNAJC5Q9H3Z4 198 aa40.11■■■■■ 4.01
SSNA1-201ENST00000322310 CUX2O14529 1486 aa39.49■■■■□ 3.91
SSNA1-201ENST00000322310 NCAPD3P42695 1498 aa39.44■■■■□ 3.9
SSNA1-201ENST00000322310 ERCC6Q03468 1493 aa39.42■■■■□ 3.9
SSNA1-201ENST00000322310 ATAD2BQ9ULI0 1458 aa39.28■■■■□ 3.88
SSNA1-201ENST00000322310 SMARCA2P51531 1590 aa39.1■■■■□ 3.85
SSNA1-201ENST00000322310 HMGXB3Q12766 1538 aa39.09■■■■□ 3.85
SSNA1-201ENST00000322310 SMARCA4P51532 1647 aa39.09■■■■□ 3.85
SSNA1-201ENST00000322310 NESP48681 1621 aa39.07■■■■□ 3.85
SSNA1-201ENST00000322310 BAZ1BQ9UIG0 1483 aaKnown RBP38.86■■■■□ 3.81
SSNA1-201ENST00000322310 BAZ1AQ9NRL2 1556 aaPredicted RBP38.8■■■■□ 3.8
SSNA1-201ENST00000322310 THOC2Q8NI27 1593 aaKnown RBP38.74■■■■□ 3.79
SSNA1-201ENST00000322310 PEG3Q9GZU2 1588 aa38.68■■■■□ 3.78
SSNA1-201ENST00000322310 LAMC3Q9Y6N6 1575 aa38.63■■■■□ 3.77
SSNA1-201ENST00000322310 MROH2BQ7Z745 1585 aa38.53■■■■□ 3.76
SSNA1-201ENST00000322310 KIF21AQ7Z4S6 1674 aa38.51■■■■□ 3.76
SSNA1-201ENST00000322310 PDS5BQ9NTI5 1447 aa38.43■■■■□ 3.74
SSNA1-201ENST00000322310 CADPSQ9ULU8 1353 aa38.23■■■■□ 3.71
SSNA1-201ENST00000322310 TRIM41Q8WV44 630 aa38.2■■■■□ 3.71
SSNA1-201ENST00000322310 MRC2Q9UBG0 1479 aa38.15■■■■□ 3.7
SSNA1-201ENST00000322310 WDR62O43379 1518 aa38.07■■■■□ 3.69
SSNA1-201ENST00000322310 WIZO95785 1651 aa38.04■■■■□ 3.68
SSNA1-201ENST00000322310 CEP164Q9UPV0 1460 aa37.9■■■■□ 3.66
SSNA1-201ENST00000322310 FANCD2Q9BXW9 1451 aa37.82■■■■□ 3.64
SSNA1-201ENST00000322310 CFTRP13569 1480 aa37.69■■■■□ 3.62
SSNA1-201ENST00000322310 OSCARQ8IYS5 282 aa37.61■■■■□ 3.61
SSNA1-201ENST00000322310 URB2Q14146 1524 aaKnown RBP37.56■■■■□ 3.6
SSNA1-201ENST00000322310 RSF1Q96T23 1441 aaPredicted RBP37.53■■■■□ 3.6
SSNA1-201ENST00000322310 TOP2AP11388 1531 aaKnown RBP37.49■■■■□ 3.59
SSNA1-201ENST00000322310 RIMBP3CA6NJZ7 1639 aa37.21■■■■□ 3.55
SSNA1-201ENST00000322310 RIMBP3BA6NNM3 1639 aa37.21■■■■□ 3.55
SSNA1-201ENST00000322310 RIMBP3Q9UFD9 1639 aa37.21■■■■□ 3.55
SSNA1-201ENST00000322310 PRDM2Q13029 1718 aa37.21■■■■□ 3.55
SSNA1-201ENST00000322310 ZNF608Q9ULD9 1512 aaPredicted RBP37.2■■■■□ 3.55
SSNA1-201ENST00000322310 IFT140Q96RY7 1462 aa37.14■■■■□ 3.54
SSNA1-201ENST00000322310 CCDC88BA6NC98 1476 aa37.09■■■■□ 3.53
SSNA1-201ENST00000322310 ARHGEF11O15085 1522 aa37.05■■■■□ 3.52
SSNA1-201ENST00000322310 TOPBP1Q92547 1522 aa37.05■■■■□ 3.52
SSNA1-201ENST00000322310 EIF4G3O43432 1585 aaKnown RBP36.95■■■■□ 3.51
SSNA1-201ENST00000322310 ABCC8Q09428 1581 aa36.85■■■■□ 3.49
SSNA1-201ENST00000322310 DNMBPQ6XZF7 1577 aa36.84■■■■□ 3.49
SSNA1-201ENST00000322310 CYB5RLQ6IPT4 315 aa36.82■■■■□ 3.48
SSNA1-201ENST00000322310 AQRO60306 1485 aaKnown RBP eCLIP36.79■■■■□ 3.48
SSNA1-201ENST00000322310 CHD1O14646 1710 aa36.76■■■■□ 3.47
SSNA1-201ENST00000322310 TARBP1Q13395 1621 aaKnown RBP36.75■■■■□ 3.47
SSNA1-201ENST00000322310 FBLN2P98095 1184 aa36.67■■■■□ 3.46
SSNA1-201ENST00000322310 ARAP1Q96P48 1450 aa36.66■■■■□ 3.46
SSNA1-201ENST00000322310 POLA1P09884 1462 aaPredicted RBP36.64■■■■□ 3.46
SSNA1-201ENST00000322310 TRHP20396 242 aaPredicted RBP36.59■■■■□ 3.45
SSNA1-201ENST00000322310 RAD54L2Q9Y4B4 1467 aa36.55■■■■□ 3.44
SSNA1-201ENST00000322310 TDRD9Q8NDG6 1382 aaKnown RBP36.49■■■■□ 3.43
SSNA1-201ENST00000322310 SOGA1O94964 1423 aa36.45■■■■□ 3.43
SSNA1-201ENST00000322310 SNAPC4Q5SXM2 1469 aa36.39■■■■□ 3.42
SSNA1-201ENST00000322310 FGD5Q6ZNL6 1462 aa36.34■■■■□ 3.41
SSNA1-201ENST00000322310 CLASP1Q7Z460 1538 aa36.33■■■■□ 3.41
SSNA1-201ENST00000322310 CHMP7Q8WUX9 453 aaPredicted RBP36.27■■■■□ 3.4
SSNA1-201ENST00000322310 WDR97A6NE52 1622 aa36.26■■■■□ 3.39
SSNA1-201ENST00000322310 CUX1P39880 1505 aa36.24■■■■□ 3.39
SSNA1-201ENST00000322310 MAGI1Q96QZ7 1491 aaPredicted RBP36.23■■■■□ 3.39
SSNA1-201ENST00000322310 SYNJ1O43426 1573 aa36.23■■■■□ 3.39
SSNA1-201ENST00000322310 GRIN2BQ13224 1484 aa36.18■■■■□ 3.38
SSNA1-201ENST00000322310 SYNJ2O15056 1496 aa36.13■■■■□ 3.37
SSNA1-201ENST00000322310 PBRM1Q86U86 1689 aa36■■■■□ 3.35
SSNA1-201ENST00000322310 GAPVD1Q14C86 1478 aa35.99■■■■□ 3.35
SSNA1-201ENST00000322310 AEBP2Q6ZN18 517 aaPredicted RBP35.88■■■■□ 3.33
SSNA1-201ENST00000322310 ABCA5Q8WWZ7 1642 aa35.87■■■■□ 3.33
SSNA1-201ENST00000322310 ABCA10Q8WWZ4 1543 aa35.86■■■■□ 3.33
SSNA1-201ENST00000322310 ERCC6L2Q5T890 1561 aa35.78■■■■□ 3.32
SSNA1-201ENST00000322310 GRIN2AQ12879 1464 aa35.73■■■■□ 3.31
SSNA1-201ENST00000322310 CEP170Q5SW79 1584 aa35.65■■■■□ 3.3
SSNA1-201ENST00000322310 ADAMTS12P58397 1594 aa35.64■■■■□ 3.3
SSNA1-201ENST00000322310 NUP160Q12769 1436 aa35.62■■■■□ 3.29
SSNA1-201ENST00000322310 WRNQ14191 1432 aaPredicted RBP eCLIP35.61■■■■□ 3.29
SSNA1-201ENST00000322310 SHROOM2Q13796 1616 aa35.52■■■■□ 3.28
SSNA1-201ENST00000322310 SUPT5HO00267 1087 aaKnown RBP35.51■■■■□ 3.28
SSNA1-201ENST00000322310 FHAD1B1AJZ9 1412 aa35.5■■■■□ 3.27
SSNA1-201ENST00000322310 TOP2BQ02880 1626 aa35.46■■■■□ 3.27
SSNA1-201ENST00000322310 BIVM-ERCC5R4GMW8 1640 aa35.46■■■■□ 3.27
SSNA1-201ENST00000322310 ERICH3Q5RHP9 1530 aa35.39■■■■□ 3.26
SSNA1-201ENST00000322310 PRG4Q92954 1404 aaPredicted RBP35.35■■■■□ 3.25
SSNA1-201ENST00000322310 KIF13AQ9H1H9 1805 aa35.34■■■■□ 3.25
SSNA1-201ENST00000322310 JPH4Q96JJ6 628 aa35.26■■■■□ 3.24
Retrieved 100 of 20,778 RNA–protein pairs in 56.1 ms