RNA–Protein interactions for RNA: ENST00000487169.5

HDLBP-241, Transcript of high density lipoprotein binding protein, humanhuman

TSL 2

Gene HDLBP, Length 4,339 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDLBP-241ENST00000487169 DCAF8L2P0C7V8 631 aa23.78■■□□□ 1.4
HDLBP-241ENST00000487169 NISCHQ9Y2I1 1504 aa23.26■■□□□ 1.31
HDLBP-241ENST00000487169 SUPT5HO00267 1087 aaKnown RBP22.45■■□□□ 1.18
HDLBP-241ENST00000487169 SHROOM4Q9ULL8 1493 aa22.1■■□□□ 1.13
HDLBP-241ENST00000487169 EHMT2Q96KQ7 1210 aa21.64■■□□□ 1.05
HDLBP-241ENST00000487169 FAM9AQ8IZU1 332 aaPredicted RBP21.17■□□□□ 0.98
HDLBP-241ENST00000487169 APLP2Q06481 763 aa21.12■□□□□ 0.97
HDLBP-241ENST00000487169 TTBK1Q5TCY1 1321 aaPredicted RBP20.84■□□□□ 0.93
HDLBP-241ENST00000487169 TRIM41Q8WV44 630 aa20.77■□□□□ 0.92
HDLBP-241ENST00000487169 RANGAP1P46060 587 aaPredicted RBP20.75■□□□□ 0.91
HDLBP-241ENST00000487169 PCGF6Q9BYE7 350 aa20.7■□□□□ 0.9
HDLBP-241ENST00000487169 ATP1B4Q9UN42 357 aaPredicted RBP20.52■□□□□ 0.88
HDLBP-241ENST00000487169 UBTFP17480 764 aaKnown RBP20.52■□□□□ 0.88
HDLBP-241ENST00000487169 PELP1Q8IZL8 1130 aaKnown RBP20.42■□□□□ 0.86
HDLBP-241ENST00000487169 CCER1Q8TC90 406 aaPredicted RBP20.32■□□□□ 0.84
HDLBP-241ENST00000487169 HRCP23327 699 aa20.18■□□□□ 0.82
HDLBP-241ENST00000487169 ZEB1P37275 1124 aaPredicted RBP20.17■□□□□ 0.82
HDLBP-241ENST00000487169 PPARGC1BQ86YN6 1023 aaKnown RBP20.14■□□□□ 0.81
HDLBP-241ENST00000487169 CENPBP07199 599 aaPredicted RBP19.98■□□□□ 0.79
HDLBP-241ENST00000487169 CHIC1Q5VXU3 224 aa19.93■□□□□ 0.78
HDLBP-241ENST00000487169 LOC105371045A0A1W2PR82 267 aa19.92■□□□□ 0.78
HDLBP-241ENST00000487169 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.86■□□□□ 0.77
HDLBP-241ENST00000487169 HNRNPUL2Q1KMD3 747 aaKnown RBP19.86■□□□□ 0.77
HDLBP-241ENST00000487169 ITGAEP38570 1179 aa19.83■□□□□ 0.77
HDLBP-241ENST00000487169 ABCC9O60706 1549 aa19.83■□□□□ 0.77
HDLBP-241ENST00000487169 TRIM26Q12899 539 aaPredicted RBP19.83■□□□□ 0.76
HDLBP-241ENST00000487169 PABPN1Q86U42 306 aaKnown RBP eCLIP19.81■□□□□ 0.765e-8■■□□□ 12.5
HDLBP-241ENST00000487169 MYT1LQ9UL68 1186 aa19.72■□□□□ 0.75
HDLBP-241ENST00000487169 YTHDC1Q96MU7 727 aaKnown RBP19.7■□□□□ 0.74
HDLBP-241ENST00000487169 NEFLP07196 543 aa19.6■□□□□ 0.73
HDLBP-241ENST00000487169 ZCCHC6Q5VYS8 1495 aaKnown RBP19.55■□□□□ 0.72
HDLBP-241ENST00000487169 ERICH6Q7L0X2 663 aa19.55■□□□□ 0.72
HDLBP-241ENST00000487169 POLR3GLQ9BT43 218 aa19.52■□□□□ 0.71
HDLBP-241ENST00000487169 CCDC180Q9P1Z9 1646 aa19.48■□□□□ 0.71
HDLBP-241ENST00000487169 CNGB1Q14028 1251 aaPredicted RBP19.37■□□□□ 0.69
HDLBP-241ENST00000487169 FAM50AQ14320 339 aaKnown RBP19.31■□□□□ 0.68
HDLBP-241ENST00000487169 FBLN2P98095 1184 aa19.24■□□□□ 0.67
HDLBP-241ENST00000487169 MYO15BQ96JP2 1530 aa19.2■□□□□ 0.66
HDLBP-241ENST00000487169 TRIM52Q96A61 297 aa19.17■□□□□ 0.66
HDLBP-241ENST00000487169 SLC4A1APQ9BWU0 796 aaKnown RBP19.14■□□□□ 0.65
HDLBP-241ENST00000487169 MYT1Q01538 1121 aa19.11■□□□□ 0.65
HDLBP-241ENST00000487169 CSRNP3Q8WYN3 585 aa19.09■□□□□ 0.65
HDLBP-241ENST00000487169 NEUROD1Q13562 356 aa19.08■□□□□ 0.64
HDLBP-241ENST00000487169 P3H3Q8IVL6 736 aa19.05■□□□□ 0.64
HDLBP-241ENST00000487169 DIEXFQ68CQ4 756 aaKnown RBP19.04■□□□□ 0.64
HDLBP-241ENST00000487169 SCAF1Q9H7N4 1312 aaKnown RBP18.99■□□□□ 0.63
HDLBP-241ENST00000487169 ARID3CA6NKF2 412 aa18.99■□□□□ 0.63
HDLBP-241ENST00000487169 DCAF1Q9Y4B6 1507 aa18.96■□□□□ 0.63
HDLBP-241ENST00000487169 ZNF326Q5BKZ1 582 aaKnown RBP18.95■□□□□ 0.62
HDLBP-241ENST00000487169 SCRIBQ14160 1630 aa18.93■□□□□ 0.62
HDLBP-241ENST00000487169 DAXXQ9UER7 740 aaPredicted RBP18.92■□□□□ 0.62
HDLBP-241ENST00000487169 ZNF777Q9ULD5 760 aaPredicted RBP18.8■□□□□ 0.6
HDLBP-241ENST00000487169 CDK11AQ9UQ88 783 aaPredicted RBP18.77■□□□□ 0.59
HDLBP-241ENST00000487169 GTF3C3Q9Y5Q9 886 aa18.75■□□□□ 0.59
HDLBP-241ENST00000487169 ACIN1Q9UKV3 1341 aaKnown RBP18.75■□□□□ 0.59
HDLBP-241ENST00000487169 CLSPNQ9HAW4 1339 aa18.73■□□□□ 0.59
HDLBP-241ENST00000487169 ANP32CO43423 234 aa18.73■□□□□ 0.59
HDLBP-241ENST00000487169 ZNF316A6NFI3 1004 aaPredicted RBP18.66■□□□□ 0.58
HDLBP-241ENST00000487169 BCANQ96GW7 911 aa18.62■□□□□ 0.57
HDLBP-241ENST00000487169 NPM1P06748 294 aaKnown RBP eCLIP18.54■□□□□ 0.56
HDLBP-241ENST00000487169 RSF1Q96T23 1441 aaPredicted RBP18.51■□□□□ 0.55
HDLBP-241ENST00000487169 ESF1Q9H501 851 aaKnown RBP18.5■□□□□ 0.55
HDLBP-241ENST00000487169 CHGAP10645 457 aaKnown RBP18.48■□□□□ 0.55
HDLBP-241ENST00000487169 CHIC2Q9UKJ5 165 aa18.47■□□□□ 0.55
HDLBP-241ENST00000487169 SLC24A1O60721 1099 aa18.45■□□□□ 0.54
HDLBP-241ENST00000487169 NEFMP07197 916 aa18.44■□□□□ 0.54
HDLBP-241ENST00000487169 CHMP7Q8WUX9 453 aaPredicted RBP18.44■□□□□ 0.54
HDLBP-241ENST00000487169 TONSLQ96HA7 1378 aa18.44■□□□□ 0.54
HDLBP-241ENST00000487169 ZBTB47Q9UFB7 747 aaPredicted RBP18.4■□□□□ 0.54
HDLBP-241ENST00000487169 RTL5Q5HYW3 569 aaPredicted RBP18.4■□□□□ 0.54
HDLBP-241ENST00000487169 STAG3Q9UJ98 1225 aa18.4■□□□□ 0.54
HDLBP-241ENST00000487169 TSPY4P0CV99 314 aa18.38■□□□□ 0.53
HDLBP-241ENST00000487169 TSPY10P0CW01 314 aa18.38■□□□□ 0.53
HDLBP-241ENST00000487169 BCL11AQ9H165 835 aa18.38■□□□□ 0.53
HDLBP-241ENST00000487169 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.37■□□□□ 0.533e-10■■□□□ 13.1
HDLBP-241ENST00000487169 CANXP27824 592 aaKnown RBP18.37■□□□□ 0.53
HDLBP-241ENST00000487169 PLPPR3Q6T4P5 718 aa18.36■□□□□ 0.53
HDLBP-241ENST00000487169 MTUS2Q5JR59 1369 aa18.36■□□□□ 0.53
HDLBP-241ENST00000487169 RB1CC1Q8TDY2 1594 aa18.35■□□□□ 0.53
HDLBP-241ENST00000487169 DDX10Q13206 875 aaKnown RBP18.32■□□□□ 0.52
HDLBP-241ENST00000487169 NACADO15069 1562 aa18.31■□□□□ 0.52
HDLBP-241ENST00000487169 CLIP1P30622 1438 aa18.3■□□□□ 0.52
HDLBP-241ENST00000487169 CECR2Q9BXF3 1484 aa18.27■□□□□ 0.51
HDLBP-241ENST00000487169 KDM2AQ9Y2K7 1162 aa18.23■□□□□ 0.51
HDLBP-241ENST00000487169 KCNH8Q96L42 1107 aa18.22■□□□□ 0.51
HDLBP-241ENST00000487169 HNRNPUQ00839 825 aaKnown RBP eCLIP18.2■□□□□ 0.5
HDLBP-241ENST00000487169 FAM9BQ8IZU0 186 aa18.2■□□□□ 0.5
HDLBP-241ENST00000487169 WRNQ14191 1432 aaPredicted RBP eCLIP18.19■□□□□ 0.5
HDLBP-241ENST00000487169 RRP7BPQ9NSQ0 103 aa18.19■□□□□ 0.5
HDLBP-241ENST00000487169 PLEKHD1A6NEE1 506 aa18.18■□□□□ 0.5
HDLBP-241ENST00000487169 SALL2Q9Y467 1007 aaPredicted RBP18.17■□□□□ 0.5
HDLBP-241ENST00000487169 BAZ1BQ9UIG0 1483 aaKnown RBP18.16■□□□□ 0.5
HDLBP-241ENST00000487169 EEA1Q15075 1411 aa18.16■□□□□ 0.5
HDLBP-241ENST00000487169 TMC1Q8TDI8 760 aa18.13■□□□□ 0.49
HDLBP-241ENST00000487169 HIRIP3Q9BW71 556 aaPredicted RBP18.12■□□□□ 0.49
HDLBP-241ENST00000487169 MROH2BQ7Z745 1585 aa18.11■□□□□ 0.49
HDLBP-241ENST00000487169 CEP162Q5TB80 1403 aa18.09■□□□□ 0.49
HDLBP-241ENST00000487169 GOLGA3Q08378 1498 aa18.08■□□□□ 0.49
HDLBP-241ENST00000487169 KIF27Q86VH2 1401 aa18.08■□□□□ 0.49
HDLBP-241ENST00000487169 FKBP8Q14318 412 aa18.08■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms