RNA–Protein interactions for RNA: ENST00000463511.1

SSNA1-203, Transcript of SS nuclear autoantigen 1, humanhuman

TSL 2

Gene SSNA1, Length 570 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSNA1-203ENST00000463511 NISCHQ9Y2I1 1504 aa58.48■■■■■ 6.95
SSNA1-203ENST00000463511 ABCC9O60706 1549 aa52.71■■■■■ 6.03
SSNA1-203ENST00000463511 CCDC180Q9P1Z9 1646 aa52.66■■■■■ 6.02
SSNA1-203ENST00000463511 RB1CC1Q8TDY2 1594 aa50.13■■■■■ 5.61
SSNA1-203ENST00000463511 NACADO15069 1562 aa49.72■■■■■ 5.55
SSNA1-203ENST00000463511 DNAJC5BQ9UF47 199 aa49.47■■■■■ 5.51
SSNA1-203ENST00000463511 DCAF8L2P0C7V8 631 aa49.34■■■■■ 5.49
SSNA1-203ENST00000463511 UNC13AQ9UPW8 1703 aa49.18■■■■■ 5.46
SSNA1-203ENST00000463511 PABPN1Q86U42 306 aaKnown RBP eCLIP48.97■■■■■ 5.43
SSNA1-203ENST00000463511 MYO15BQ96JP2 1530 aa48.93■■■■■ 5.42
SSNA1-203ENST00000463511 BICRAQ9NZM4 1560 aa48.69■■■■■ 5.39
SSNA1-203ENST00000463511 ZCCHC6Q5VYS8 1495 aaKnown RBP48.45■■■■■ 5.35
SSNA1-203ENST00000463511 DCAF1Q9Y4B6 1507 aa48.27■■■■■ 5.32
SSNA1-203ENST00000463511 SCRIBQ14160 1630 aa47.96■■■■■ 5.27
SSNA1-203ENST00000463511 SHROOM4Q9ULL8 1493 aa47.94■■■■■ 5.26
SSNA1-203ENST00000463511 CC2D2AQ9P2K1 1620 aa47.65■■■■■ 5.22
SSNA1-203ENST00000463511 EIF4G1Q04637 1599 aaKnown RBP47.49■■■■■ 5.19
SSNA1-203ENST00000463511 CECR2Q9BXF3 1484 aa47.46■■■■■ 5.19
SSNA1-203ENST00000463511 NCAPD3P42695 1498 aa45.83■■■■■ 4.93
SSNA1-203ENST00000463511 SMARCA4P51532 1647 aa45.72■■■■■ 4.91
SSNA1-203ENST00000463511 ATAD2BQ9ULI0 1458 aa45.71■■■■■ 4.91
SSNA1-203ENST00000463511 SMARCA2P51531 1590 aa45.62■■■■■ 4.89
SSNA1-203ENST00000463511 HMGXB3Q12766 1538 aa45.57■■■■■ 4.89
SSNA1-203ENST00000463511 ERCC6Q03468 1493 aa45.51■■■■■ 4.88
SSNA1-203ENST00000463511 DNAJC5Q9H3Z4 198 aa45.5■■■■■ 4.87
SSNA1-203ENST00000463511 CUX2O14529 1486 aa45.45■■■■■ 4.87
SSNA1-203ENST00000463511 BAZ1AQ9NRL2 1556 aaPredicted RBP45.42■■■■■ 4.86
SSNA1-203ENST00000463511 BAZ1BQ9UIG0 1483 aaKnown RBP45.29■■■■■ 4.84
SSNA1-203ENST00000463511 NESP48681 1621 aa45.25■■■■■ 4.83
SSNA1-203ENST00000463511 PEG3Q9GZU2 1588 aa45.24■■■■■ 4.83
SSNA1-203ENST00000463511 MROH2BQ7Z745 1585 aa45.08■■■■■ 4.81
SSNA1-203ENST00000463511 LAMC3Q9Y6N6 1575 aa44.92■■■■■ 4.78
SSNA1-203ENST00000463511 THOC2Q8NI27 1593 aaKnown RBP44.89■■■■■ 4.78
SSNA1-203ENST00000463511 KIF21AQ7Z4S6 1674 aa44.8■■■■■ 4.76
SSNA1-203ENST00000463511 WIZO95785 1651 aa44.61■■■■■ 4.73
SSNA1-203ENST00000463511 PDS5BQ9NTI5 1447 aa44.58■■■■■ 4.73
SSNA1-203ENST00000463511 CADPSQ9ULU8 1353 aa44.43■■■■■ 4.7
SSNA1-203ENST00000463511 MRC2Q9UBG0 1479 aa44.26■■■■■ 4.68
SSNA1-203ENST00000463511 WDR62O43379 1518 aa44.19■■■■■ 4.66
SSNA1-203ENST00000463511 CEP164Q9UPV0 1460 aa44.07■■■■■ 4.65
SSNA1-203ENST00000463511 RSF1Q96T23 1441 aaPredicted RBP44.04■■■■■ 4.64
SSNA1-203ENST00000463511 FANCD2Q9BXW9 1451 aa43.99■■■■■ 4.63
SSNA1-203ENST00000463511 TOP2AP11388 1531 aaKnown RBP43.98■■■■■ 4.63
SSNA1-203ENST00000463511 CFTRP13569 1480 aa43.93■■■■■ 4.62
SSNA1-203ENST00000463511 PRDM2Q13029 1718 aa43.72■■■■■ 4.59
SSNA1-203ENST00000463511 URB2Q14146 1524 aaKnown RBP43.65■■■■■ 4.58
SSNA1-203ENST00000463511 TRIM41Q8WV44 630 aa43.51■■■■■ 4.56
SSNA1-203ENST00000463511 CCDC88BA6NC98 1476 aa43.43■■■■■ 4.54
SSNA1-203ENST00000463511 OSCARQ8IYS5 282 aa43.26■■■■■ 4.52
SSNA1-203ENST00000463511 TOPBP1Q92547 1522 aa43.16■■■■■ 4.5
SSNA1-203ENST00000463511 IFT140Q96RY7 1462 aa43.14■■■■■ 4.5
SSNA1-203ENST00000463511 ZNF608Q9ULD9 1512 aaPredicted RBP43.13■■■■■ 4.5
SSNA1-203ENST00000463511 DNMBPQ6XZF7 1577 aa43.02■■■■■ 4.48
SSNA1-203ENST00000463511 ABCC8Q09428 1581 aa42.99■■■■■ 4.47
SSNA1-203ENST00000463511 EIF4G3O43432 1585 aaKnown RBP42.98■■■■■ 4.47
SSNA1-203ENST00000463511 RIMBP3CA6NJZ7 1639 aa42.9■■■■■ 4.46
SSNA1-203ENST00000463511 RIMBP3BA6NNM3 1639 aa42.9■■■■■ 4.46
SSNA1-203ENST00000463511 RIMBP3Q9UFD9 1639 aa42.9■■■■■ 4.46
SSNA1-203ENST00000463511 TARBP1Q13395 1621 aaKnown RBP42.84■■■■■ 4.45
SSNA1-203ENST00000463511 CHD1O14646 1710 aa42.75■■■■■ 4.43
SSNA1-203ENST00000463511 POLA1P09884 1462 aaPredicted RBP42.7■■■■■ 4.43
SSNA1-203ENST00000463511 ARHGEF11O15085 1522 aa42.7■■■■■ 4.43
SSNA1-203ENST00000463511 AQRO60306 1485 aaKnown RBP eCLIP42.69■■■■■ 4.42
SSNA1-203ENST00000463511 RAD54L2Q9Y4B4 1467 aa42.54■■■■■ 4.4
SSNA1-203ENST00000463511 SOGA1O94964 1423 aa42.45■■■■■ 4.39
SSNA1-203ENST00000463511 FGD5Q6ZNL6 1462 aa42.43■■■■■ 4.38
SSNA1-203ENST00000463511 FBLN2P98095 1184 aa42.41■■■■■ 4.38
SSNA1-203ENST00000463511 TDRD9Q8NDG6 1382 aaKnown RBP42.39■■■■■ 4.38
SSNA1-203ENST00000463511 CUX1P39880 1505 aa42.38■■■■■ 4.37
SSNA1-203ENST00000463511 WDR97A6NE52 1622 aa42.35■■■■■ 4.37
SSNA1-203ENST00000463511 CYB5RLQ6IPT4 315 aa42.3■■■■■ 4.36
SSNA1-203ENST00000463511 SNAPC4Q5SXM2 1469 aa42.3■■■■■ 4.36
SSNA1-203ENST00000463511 ARAP1Q96P48 1450 aa42.26■■■■■ 4.36
SSNA1-203ENST00000463511 MAGI1Q96QZ7 1491 aaPredicted RBP42.15■■■■■ 4.34
SSNA1-203ENST00000463511 CLASP1Q7Z460 1538 aa42.14■■■■■ 4.34
SSNA1-203ENST00000463511 PBRM1Q86U86 1689 aa42.13■■■■■ 4.34
SSNA1-203ENST00000463511 GRIN2BQ13224 1484 aa42.12■■■■■ 4.33
SSNA1-203ENST00000463511 SYNJ1O43426 1573 aa42.1■■■■■ 4.33
SSNA1-203ENST00000463511 CHMP7Q8WUX9 453 aaPredicted RBP42.04■■■■■ 4.32
SSNA1-203ENST00000463511 SYNJ2O15056 1496 aa42.01■■■■■ 4.32
SSNA1-203ENST00000463511 GAPVD1Q14C86 1478 aa41.97■■■■■ 4.31
SSNA1-203ENST00000463511 SUPT5HO00267 1087 aaKnown RBP41.96■■■■■ 4.31
SSNA1-203ENST00000463511 ABCA5Q8WWZ7 1642 aa41.95■■■■■ 4.31
SSNA1-203ENST00000463511 ABCA10Q8WWZ4 1543 aa41.9■■■■■ 4.3
SSNA1-203ENST00000463511 TRHP20396 242 aaPredicted RBP41.88■■■■■ 4.29
SSNA1-203ENST00000463511 BIVM-ERCC5R4GMW8 1640 aa41.73■■■■■ 4.27
SSNA1-203ENST00000463511 TOP2BQ02880 1626 aa41.68■■■■■ 4.26
SSNA1-203ENST00000463511 WRNQ14191 1432 aaPredicted RBP eCLIP41.68■■■■■ 4.26
SSNA1-203ENST00000463511 ADAMTS12P58397 1594 aa41.63■■■■■ 4.26
SSNA1-203ENST00000463511 GRIN2AQ12879 1464 aa41.6■■■■■ 4.25
SSNA1-203ENST00000463511 CEP170Q5SW79 1584 aa41.52■■■■■ 4.24
SSNA1-203ENST00000463511 ERCC6L2Q5T890 1561 aa41.5■■■■■ 4.23
SSNA1-203ENST00000463511 NUP160Q12769 1436 aa41.44■■■■■ 4.23
SSNA1-203ENST00000463511 FHAD1B1AJZ9 1412 aa41.4■■■■■ 4.22
SSNA1-203ENST00000463511 ERICH3Q5RHP9 1530 aa41.39■■■■■ 4.22
SSNA1-203ENST00000463511 SHROOM2Q13796 1616 aa41.36■■■■■ 4.21
SSNA1-203ENST00000463511 RUSC2Q8N2Y8 1516 aa41.07■■■■■ 4.16
SSNA1-203ENST00000463511 PRG4Q92954 1404 aaPredicted RBP41.05■■■■■ 4.16
SSNA1-203ENST00000463511 KIF13AQ9H1H9 1805 aa40.97■■■■■ 4.15
SSNA1-203ENST00000463511 JPH4Q96JJ6 628 aa40.94■■■■■ 4.14
Retrieved 100 of 20,778 RNA–protein pairs in 136.2 ms