RNA–Protein interactions for RNA: ENST00000250241.12

ILF3-201, Transcript of interleukin enhancer binding factor 3, humanhuman

TSL 1 (best) BASIC

Gene ILF3, Length 3,035 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ILF3-201ENST00000250241 NISCHQ9Y2I1 1504 aa27.14■■□□□ 1.94
ILF3-201ENST00000250241 SHROOM4Q9ULL8 1493 aa23.18■■□□□ 1.3
ILF3-201ENST00000250241 DCAF8L2P0C7V8 631 aa23.18■■□□□ 1.3
ILF3-201ENST00000250241 CCDC180Q9P1Z9 1646 aa23.16■■□□□ 1.3
ILF3-201ENST00000250241 ZCCHC6Q5VYS8 1495 aaKnown RBP22.81■■□□□ 1.24
ILF3-201ENST00000250241 SUPT5HO00267 1087 aaKnown RBP22.53■■□□□ 1.2
ILF3-201ENST00000250241 ABCC9O60706 1549 aa22.24■■□□□ 1.15
ILF3-201ENST00000250241 PELP1Q8IZL8 1130 aaKnown RBP22.14■■□□□ 1.13
ILF3-201ENST00000250241 DCAF1Q9Y4B6 1507 aa22.1■■□□□ 1.13
ILF3-201ENST00000250241 SCRIBQ14160 1630 aa21.9■■□□□ 1.1
ILF3-201ENST00000250241 HRCP23327 699 aa21.67■■□□□ 1.06
ILF3-201ENST00000250241 PPARGC1BQ86YN6 1023 aaKnown RBP21.66■■□□□ 1.06
ILF3-201ENST00000250241 NACADO15069 1562 aa21.61■■□□□ 1.05
ILF3-201ENST00000250241 MYO15BQ96JP2 1530 aa21.61■■□□□ 1.05
ILF3-201ENST00000250241 MYT1Q01538 1121 aa21.58■■□□□ 1.05
ILF3-201ENST00000250241 PCGF6Q9BYE7 350 aa21.58■■□□□ 1.04
ILF3-201ENST00000250241 CHIC1Q5VXU3 224 aa21.46■■□□□ 1.03
ILF3-201ENST00000250241 RB1CC1Q8TDY2 1594 aa21.42■■□□□ 1.02
ILF3-201ENST00000250241 RSF1Q96T23 1441 aaPredicted RBP21.35■■□□□ 1.01
ILF3-201ENST00000250241 CECR2Q9BXF3 1484 aa21.32■■□□□ 1
ILF3-201ENST00000250241 PABPN1Q86U42 306 aaKnown RBP eCLIP21.28■■□□□ 11e-7■■□□□ 13.1
ILF3-201ENST00000250241 MROH2BQ7Z745 1585 aa21.14■□□□□ 0.97
ILF3-201ENST00000250241 UNC13AQ9UPW8 1703 aa21.03■□□□□ 0.96
ILF3-201ENST00000250241 WIZO95785 1651 aa21.01■□□□□ 0.95
ILF3-201ENST00000250241 LOC105371045A0A1W2PR82 267 aa20.95■□□□□ 0.94
ILF3-201ENST00000250241 TRIM41Q8WV44 630 aa20.93■□□□□ 0.94
ILF3-201ENST00000250241 FAM9AQ8IZU1 332 aaPredicted RBP20.91■□□□□ 0.94
ILF3-201ENST00000250241 EHMT2Q96KQ7 1210 aa20.89■□□□□ 0.94
ILF3-201ENST00000250241 BAZ1AQ9NRL2 1556 aaPredicted RBP20.89■□□□□ 0.93
ILF3-201ENST00000250241 BICRAQ9NZM4 1560 aa20.8■□□□□ 0.92
ILF3-201ENST00000250241 SCAF1Q9H7N4 1312 aaKnown RBP20.77■□□□□ 0.92
ILF3-201ENST00000250241 SMARCA4P51532 1647 aa20.77■□□□□ 0.91
ILF3-201ENST00000250241 TOP2AP11388 1531 aaKnown RBP20.59■□□□□ 0.89
ILF3-201ENST00000250241 CCDC88BA6NC98 1476 aa20.58■□□□□ 0.89
ILF3-201ENST00000250241 TRIM26Q12899 539 aaPredicted RBP20.55■□□□□ 0.88
ILF3-201ENST00000250241 TTBK1Q5TCY1 1321 aaPredicted RBP20.49■□□□□ 0.87
ILF3-201ENST00000250241 SMARCA2P51531 1590 aa20.48■□□□□ 0.87
ILF3-201ENST00000250241 ABCC8Q09428 1581 aa20.44■□□□□ 0.86
ILF3-201ENST00000250241 ATAD2BQ9ULI0 1458 aa20.4■□□□□ 0.86
ILF3-201ENST00000250241 BAZ1BQ9UIG0 1483 aaKnown RBP20.38■□□□□ 0.85
ILF3-201ENST00000250241 EIF4G1Q04637 1599 aaKnown RBP20.3■□□□□ 0.84
ILF3-201ENST00000250241 PEG3Q9GZU2 1588 aa20.25■□□□□ 0.83
ILF3-201ENST00000250241 ZEB1P37275 1124 aaPredicted RBP20.19■□□□□ 0.82
ILF3-201ENST00000250241 SOGA1O94964 1423 aa20.16■□□□□ 0.82
ILF3-201ENST00000250241 NEUROD1Q13562 356 aa20.13■□□□□ 0.81
ILF3-201ENST00000250241 WRNQ14191 1432 aaPredicted RBP eCLIP20.12■□□□□ 0.81
ILF3-201ENST00000250241 ACIN1Q9UKV3 1341 aaKnown RBP20.1■□□□□ 0.81
ILF3-201ENST00000250241 RUSC2Q8N2Y8 1516 aa20.09■□□□□ 0.81
ILF3-201ENST00000250241 UBTFP17480 764 aaKnown RBP20.08■□□□□ 0.81
ILF3-201ENST00000250241 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.04■□□□□ 0.8
ILF3-201ENST00000250241 CSRNP3Q8WYN3 585 aa20.04■□□□□ 0.8
ILF3-201ENST00000250241 GTF3C3Q9Y5Q9 886 aa20.04■□□□□ 0.8
ILF3-201ENST00000250241 NCAPD3P42695 1498 aa20.03■□□□□ 0.8
ILF3-201ENST00000250241 RANGAP1P46060 587 aaPredicted RBP20■□□□□ 0.79
ILF3-201ENST00000250241 SYNJ1O43426 1573 aa19.98■□□□□ 0.79
ILF3-201ENST00000250241 HMGXB3Q12766 1538 aa19.93■□□□□ 0.78
ILF3-201ENST00000250241 CCER1Q8TC90 406 aaPredicted RBP19.9■□□□□ 0.78
ILF3-201ENST00000250241 BCL11AQ9H165 835 aa19.88■□□□□ 0.77
ILF3-201ENST00000250241 CC2D2AQ9P2K1 1620 aa19.87■□□□□ 0.77
ILF3-201ENST00000250241 CENPBP07199 599 aaPredicted RBP19.86■□□□□ 0.77
ILF3-201ENST00000250241 YTHDC1Q96MU7 727 aaKnown RBP19.85■□□□□ 0.77
ILF3-201ENST00000250241 EEA1Q15075 1411 aa19.81■□□□□ 0.76
ILF3-201ENST00000250241 CEP162Q5TB80 1403 aa19.81■□□□□ 0.76
ILF3-201ENST00000250241 DIEXFQ68CQ4 756 aaKnown RBP19.8■□□□□ 0.76
ILF3-201ENST00000250241 CFTRP13569 1480 aa19.75■□□□□ 0.75
ILF3-201ENST00000250241 TNIKQ9UKE5 1360 aa19.75■□□□□ 0.75
ILF3-201ENST00000250241 GOLGA3Q08378 1498 aa19.74■□□□□ 0.75
ILF3-201ENST00000250241 DNAJC5BQ9UF47 199 aa19.72■□□□□ 0.75
ILF3-201ENST00000250241 CADPSQ9ULU8 1353 aa19.71■□□□□ 0.75
ILF3-201ENST00000250241 TOP2BQ02880 1626 aa19.71■□□□□ 0.75
ILF3-201ENST00000250241 CUX1P39880 1505 aa19.7■□□□□ 0.74
ILF3-201ENST00000250241 PRKCSHP14314 528 aaPredicted RBP19.68■□□□□ 0.74
ILF3-201ENST00000250241 CEP164Q9UPV0 1460 aa19.67■□□□□ 0.74
ILF3-201ENST00000250241 RAPGEF2Q9Y4G8 1499 aa19.66■□□□□ 0.74
ILF3-201ENST00000250241 NESP48681 1621 aa19.62■□□□□ 0.73
ILF3-201ENST00000250241 BIVM-ERCC5R4GMW8 1640 aa19.59■□□□□ 0.73
ILF3-201ENST00000250241 CLIP1P30622 1438 aa19.57■□□□□ 0.72
ILF3-201ENST00000250241 KIF27Q86VH2 1401 aa19.55■□□□□ 0.72
ILF3-201ENST00000250241 FANCD2Q9BXW9 1451 aa19.53■□□□□ 0.72
ILF3-201ENST00000250241 KIF21BO75037 1637 aa19.53■□□□□ 0.72
ILF3-201ENST00000250241 APLP2Q06481 763 aa19.52■□□□□ 0.72
ILF3-201ENST00000250241 CUX2O14529 1486 aa19.52■□□□□ 0.71
ILF3-201ENST00000250241 FGD5Q6ZNL6 1462 aa19.47■□□□□ 0.71
ILF3-201ENST00000250241 PRDM2Q13029 1718 aa19.42■□□□□ 0.7
ILF3-201ENST00000250241 ANP32EQ9BTT0 268 aa19.41■□□□□ 0.7
ILF3-201ENST00000250241 RAD54L2Q9Y4B4 1467 aa19.41■□□□□ 0.7
ILF3-201ENST00000250241 ERICH6Q7L0X2 663 aa19.41■□□□□ 0.7
ILF3-201ENST00000250241 PRXQ9BXM0 1461 aa19.4■□□□□ 0.7
ILF3-201ENST00000250241 HNRNPUL2Q1KMD3 747 aaKnown RBP19.37■□□□□ 0.69
ILF3-201ENST00000250241 IGF1RP08069 1367 aa19.37■□□□□ 0.69
ILF3-201ENST00000250241 MIER1Q8N108 512 aa19.36■□□□□ 0.69
ILF3-201ENST00000250241 P3H3Q8IVL6 736 aa19.35■□□□□ 0.69
ILF3-201ENST00000250241 VPS8Q8N3P4 1428 aa19.34■□□□□ 0.69
ILF3-201ENST00000250241 CARMIL1Q5VZK9 1371 aa19.33■□□□□ 0.69
ILF3-201ENST00000250241 ZNF316A6NFI3 1004 aaPredicted RBP19.32■□□□□ 0.68
ILF3-201ENST00000250241 TOPBP1Q92547 1522 aa19.31■□□□□ 0.68
ILF3-201ENST00000250241 ATP1B4Q9UN42 357 aaPredicted RBP19.31■□□□□ 0.68
ILF3-201ENST00000250241 ERICH3Q5RHP9 1530 aa19.3■□□□□ 0.68
ILF3-201ENST00000250241 POLA1P09884 1462 aaPredicted RBP19.28■□□□□ 0.68
ILF3-201ENST00000250241 TDRD9Q8NDG6 1382 aaKnown RBP19.27■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 8 ms