Protein–RNA interactions for Protein: Q92900

UPF1, Regulator of nonsense transcripts 1, humanhuman

Known RBP eCLIP

Length 1,129 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1Q92900 RALBP1-206ENST00000609094 3676 ntTSL 2 BASIC7.84□□□□□ -1.157e-6■□□□□ 10
UPF1Q92900 RAD54B-208ENST00000523839 472 ntTSL 37.37□□□□□ -1.237e-9■□□□□ 10
UPF1Q92900 BAG1-209ENST00000493917 526 ntTSL 57.02□□□□□ -1.297e-6■□□□□ 10
UPF1Q92900 QSER1-204ENST00000527788 5052 ntTSL 2 BASIC5.29□□□□□ -1.567e-9■□□□□ 10
UPF1Q92900 FSBP-202ENST00000517506 2472 ntTSL 55.23□□□□□ -1.577e-9■□□□□ 10
UPF1Q92900 QSER1-201ENST00000399302 9335 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.717e-9■□□□□ 10
UPF1Q92900 EMD-201ENST00000369835 966 ntTSL 3 BASIC24.99■■□□□ 1.591e-23■□□□□ 10
UPF1Q92900 PCF11-206ENST00000533018 580 ntTSL 326.12■■□□□ 1.774e-10■□□□□ 9.9
UPF1Q92900 PCF11-207ENST00000624931 1720 nt20.71■□□□□ 0.914e-10■□□□□ 9.9
UPF1Q92900 PCF11-203ENST00000530304 2649 ntTSL 1 (best)19.04■□□□□ 0.644e-10■□□□□ 9.9
UPF1Q92900 PCF11-204ENST00000530660 3309 ntTSL 213.46□□□□□ -0.254e-10■□□□□ 9.9
UPF1Q92900 PCF11-201ENST00000298281 7677 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.54e-10■□□□□ 9.9
UPF1Q92900 CDS2-201ENST00000379070 2713 ntTSL 29.87□□□□□ -0.831e-7■□□□□ 9.9
UPF1Q92900 CBX3-203ENST00000409747 1717 ntTSL 1 (best) BASIC21.51■■□□□ 1.031e-20■□□□□ 9.9
UPF1Q92900 CBX3-201ENST00000337620 2128 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.431e-20■□□□□ 9.9
UPF1Q92900 CBX3-202ENST00000396386 1857 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.41e-20■□□□□ 9.9
UPF1Q92900 C10orf76-205ENST00000495001 2464 ntTSL 215.31■□□□□ 0.043e-9■□□□□ 9.9
UPF1Q92900 SLC7A11-201ENST00000280612 9645 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.443e-9■□□□□ 9.9
UPF1Q92900 MIR1244-1-201ENST00000612829 85 ntBASIC7.11□□□□□ -1.274e-23■□□□□ 9.9
UPF1Q92900 ARPP19-202ENST00000561650 3245 ntTSL 2 BASIC14.39□□□□□ -0.112e-6■□□□□ 9.9
UPF1Q92900 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.115e-22■□□□□ 9.9
UPF1Q92900 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC27.84■■■□□ 2.055e-22■□□□□ 9.9
UPF1Q92900 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC24.72■■□□□ 1.555e-22■□□□□ 9.9
UPF1Q92900 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.495e-22■□□□□ 9.9
UPF1Q92900 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC24.38■■□□□ 1.495e-22■□□□□ 9.9
UPF1Q92900 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC23.62■■□□□ 1.375e-22■□□□□ 9.9
UPF1Q92900 C6orf48-202ENST00000375635 610 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.515e-22■□□□□ 9.9
UPF1Q92900 C6orf48-209ENST00000395789 952 ntAPPRIS P1 TSL 3 BASIC18.26■□□□□ 0.515e-22■□□□□ 9.9
UPF1Q92900 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC23.4■■□□□ 1.343e-7■□□□□ 9.9
UPF1Q92900 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC23.28■■□□□ 1.323e-7■□□□□ 9.9
UPF1Q92900 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC19.01■□□□□ 0.633e-7■□□□□ 9.9
UPF1Q92900 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC18.87■□□□□ 0.613e-7■□□□□ 9.9
UPF1Q92900 CHTOP-206ENST00000495554 2553 ntTSL 215.94■□□□□ 0.143e-7■□□□□ 9.9
UPF1Q92900 LETMD1-220ENST00000549686 563 ntTSL 221.7■■□□□ 1.061e-8■□□□□ 9.9
UPF1Q92900 LETMD1-231ENST00000551931 705 ntTSL 319.05■□□□□ 0.641e-8■□□□□ 9.9
UPF1Q92900 LETMD1-217ENST00000548516 850 ntTSL 514.34□□□□□ -0.111e-8■□□□□ 9.9
UPF1Q92900 LETMD1-219ENST00000549395 475 ntTSL 312.51□□□□□ -0.411e-8■□□□□ 9.9
UPF1Q92900 LETMD1-208ENST00000547256 618 ntTSL 211.28□□□□□ -0.61e-8■□□□□ 9.9
UPF1Q92900 LETMD1-204ENST00000546814 894 ntTSL 210.58□□□□□ -0.721e-8■□□□□ 9.9
UPF1Q92900 ADAM17-201ENST00000310823 4349 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.691e-6■□□□□ 9.9
UPF1Q92900 ATG4D-208ENST00000588667 1619 ntTSL 1 (best)27.06■■□□□ 1.923e-7■□□□□ 9.9
UPF1Q92900 ATG4D-204ENST00000586417 1752 ntTSL 225.54■■□□□ 1.683e-7■□□□□ 9.9
UPF1Q92900 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.443e-7■□□□□ 9.9
UPF1Q92900 ATG4D-211ENST00000589753 931 ntTSL 1 (best)19.59■□□□□ 0.733e-7■□□□□ 9.9
UPF1Q92900 ATG4D-210ENST00000588972 632 ntTSL 513.41□□□□□ -0.263e-7■□□□□ 9.9
UPF1Q92900 ATG4D-202ENST00000585437 377 ntTSL 512.1□□□□□ -0.473e-7■□□□□ 9.9
UPF1Q92900 LIN28B-201ENST00000345080 5505 ntAPPRIS P1 TSL 1 (best) BASIC8.08□□□□□ -1.122e-6■□□□□ 9.9
UPF1Q92900 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.061e-7■□□□□ 9.9
UPF1Q92900 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC19.98■□□□□ 0.792e-10■□□□□ 9.9
UPF1Q92900 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.112e-10■□□□□ 9.9
UPF1Q92900 RNASE4-202ENST00000555597 1341 ntAPPRIS P1 TSL 2 BASIC12.97□□□□□ -0.332e-10■□□□□ 9.9
UPF1Q92900 GPI-201ENST00000356487 2210 ntAPPRIS P1 TSL 1 (best) BASIC29.55■■■□□ 2.321e-10■□□□□ 9.8
UPF1Q92900 GPI-208ENST00000588991 2021 ntTSL 222.65■■□□□ 1.221e-10■□□□□ 9.8
UPF1Q92900 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.121e-6■□□□□ 9.8
UPF1Q92900 NELFCD-201ENST00000460601 2137 ntTSL 1 (best)20.45■□□□□ 0.861e-6■□□□□ 9.8
UPF1Q92900 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.691e-6■□□□□ 9.8
UPF1Q92900 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.681e-6■□□□□ 9.8
UPF1Q92900 GPI-204ENST00000586392 1706 ntTSL 218.8■□□□□ 0.61e-10■□□□□ 9.8
UPF1Q92900 NELFCD-209ENST00000486263 708 ntTSL 218.46■□□□□ 0.551e-6■□□□□ 9.8
UPF1Q92900 GPI-205ENST00000586425 1799 ntTSL 5 BASIC18.18■□□□□ 0.51e-10■□□□□ 9.8
UPF1Q92900 NELFCD-207ENST00000479207 1112 ntTSL 318.1■□□□□ 0.491e-6■□□□□ 9.8
UPF1Q92900 NELFCD-205ENST00000477741 2070 ntTSL 1 (best)17.71■□□□□ 0.431e-6■□□□□ 9.8
UPF1Q92900 NELFCD-204ENST00000474543 2047 ntTSL 517.21■□□□□ 0.351e-6■□□□□ 9.8
UPF1Q92900 GPI-203ENST00000586077 3053 nt10.93□□□□□ -0.661e-10■□□□□ 9.8
UPF1Q92900 NELFCD-206ENST00000478389 3581 ntTSL 28.92□□□□□ -0.981e-6■□□□□ 9.8
UPF1Q92900 XRCC5-202ENST00000392133 3761 ntAPPRIS P1 TSL 5 BASIC8.65□□□□□ -1.022e-8■□□□□ 9.8
UPF1Q92900 TMTC3-201ENST00000266712 7203 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.361e-6■□□□□ 9.8
UPF1Q92900 XRCC5-201ENST00000392132 3428 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.42e-8■□□□□ 9.8
UPF1Q92900 AL713998.1-201ENST00000412872 1605 ntTSL 1 (best) BASIC14.14□□□□□ -0.156e-71■□□□□ 9.8
UPF1Q92900 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC21.25■□□□□ 0.993e-9■□□□□ 9.8
UPF1Q92900 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.793e-9■□□□□ 9.8
UPF1Q92900 NCOA4-206ENST00000585056 2124 ntTSL 2 BASIC10.38□□□□□ -0.753e-9■□□□□ 9.8
UPF1Q92900 NDRG1-223ENST00000522665 411 ntTSL 218.68■□□□□ 0.587e-7■□□□□ 9.8
UPF1Q92900 NDRG1-226ENST00000523642 507 ntTSL 316.36■□□□□ 0.217e-7■□□□□ 9.8
UPF1Q92900 STMN1-204ENST00000426559 948 ntTSL 1 (best) BASIC23.33■■□□□ 1.334e-38■□□□□ 9.8
UPF1Q92900 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.974e-38■□□□□ 9.8
UPF1Q92900 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.724e-38■□□□□ 9.8
UPF1Q92900 STMN1-206ENST00000455785 1504 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.244e-38■□□□□ 9.8
UPF1Q92900 STMN1-202ENST00000374291 867 ntAPPRIS P1 TSL 2 BASIC10.88□□□□□ -0.674e-38■□□□□ 9.8
UPF1Q92900 STMN1-207ENST00000465604 2947 ntTSL 1 (best)6.32□□□□□ -1.44e-38■□□□□ 9.8
UPF1Q92900 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC19.96■□□□□ 0.796e-7■□□□□ 9.8
UPF1Q92900 NDRG1-203ENST00000517331 584 ntTSL 522.36■■□□□ 1.174e-14■□□□□ 9.8
UPF1Q92900 FCGR2A-205ENST00000467525 1642 ntTSL 514.44□□□□□ -0.12e-9■□□□□ 9.8
UPF1Q92900 FCGR2A-212ENST00000491841 730 ntTSL 314.43□□□□□ -0.12e-9■□□□□ 9.8
UPF1Q92900 FCGR2A-201ENST00000271450 2412 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.472e-9■□□□□ 9.8
UPF1Q92900 AL590385.2-201ENST00000537821 553 ntTSL 5 BASIC9.96□□□□□ -0.822e-9■□□□□ 9.8
UPF1Q92900 FCGR2A-203ENST00000459885 259 ntTSL 34.31□□□□□ -1.722e-9■□□□□ 9.8
UPF1Q92900 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.432e-8■□□□□ 9.8
UPF1Q92900 RACGAP1-201ENST00000312377 3073 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.434e-6■□□□□ 9.8
UPF1Q92900 SLC38A1-206ENST00000549049 3196 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.497e-13■□□□□ 9.8
UPF1Q92900 SLC38A1-202ENST00000439706 3436 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.537e-13■□□□□ 9.8
UPF1Q92900 OSTC-205ENST00000613215 876 ntTSL 2 BASIC11.53□□□□□ -0.562e-8■□□□□ 9.8
UPF1Q92900 RACGAP1-216ENST00000548961 387 ntTSL 3 BASIC8.99□□□□□ -0.974e-6■□□□□ 9.8
UPF1Q92900 RACGAP1-203ENST00000454520 3080 ntAPPRIS P1 TSL 1 (best) BASIC8.62□□□□□ -1.034e-6■□□□□ 9.8
UPF1Q92900 RACGAP1-202ENST00000427314 3229 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.484e-6■□□□□ 9.8
UPF1Q92900 ATG16L1-211ENST00000464645 560 ntTSL 413.36□□□□□ -0.272e-35■□□□□ 9.8
UPF1Q92900 ATG16L1-218ENST00000498620 740 ntTSL 512.27□□□□□ -0.452e-35■□□□□ 9.8
UPF1Q92900 SCARNA6-201ENST00000515982 265 ntBASIC9.82□□□□□ -0.842e-35■□□□□ 9.8
UPF1Q92900 NUCB1-208ENST00000460125 528 ntTSL 217.55■□□□□ 0.42e-7■□□□□ 9.8
UPF1Q92900 ANPEP-201ENST00000300060 3678 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.472e-13■□□□□ 9.8
Retrieved 100 of 15,879 protein–RNA pairs in 68.3 ms