RNA–Protein interactions for RNA: ENST00000268383.6

CDR2-201, Transcript of cerebellar degeneration related protein 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDR2, Length 2,702 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDR2-201ENST00000268383 NISCHQ9Y2I1 1504 aa45.07■■■■■ 4.81
CDR2-201ENST00000268383 SHROOM4Q9ULL8 1493 aa39.17■■■■□ 3.86
CDR2-201ENST00000268383 SUPT5HO00267 1087 aaKnown RBP38.51■■■■□ 3.76
CDR2-201ENST00000268383 ZCCHC6Q5VYS8 1495 aaKnown RBP38.13■■■■□ 3.69
CDR2-201ENST00000268383 CCDC180Q9P1Z9 1646 aa37.94■■■■□ 3.66
CDR2-201ENST00000268383 DCAF8L2P0C7V8 631 aa37.87■■■■□ 3.65
CDR2-201ENST00000268383 MYO15BQ96JP2 1530 aa37.39■■■■□ 3.58
CDR2-201ENST00000268383 CHIC1Q5VXU3 224 aa37.37■■■■□ 3.57
CDR2-201ENST00000268383 DCAF1Q9Y4B6 1507 aa36.69■■■■□ 3.46
CDR2-201ENST00000268383 PCGF6Q9BYE7 350 aa36.68■■■■□ 3.46
CDR2-201ENST00000268383 HRCP23327 699 aa36.65■■■■□ 3.46
CDR2-201ENST00000268383 LOC105371045A0A1W2PR82 267 aa36.52■■■■□ 3.44
CDR2-201ENST00000268383 PPARGC1BQ86YN6 1023 aaKnown RBP36.21■■■■□ 3.39
CDR2-201ENST00000268383 SCRIBQ14160 1630 aa36.04■■■■□ 3.36
CDR2-201ENST00000268383 ABCC9O60706 1549 aa36.03■■■■□ 3.36
CDR2-201ENST00000268383 RSF1Q96T23 1441 aaPredicted RBP35.88■■■■□ 3.33
CDR2-201ENST00000268383 FAM9AQ8IZU1 332 aaPredicted RBP35.67■■■■□ 3.3
CDR2-201ENST00000268383 TRIM41Q8WV44 630 aa35.65■■■■□ 3.3
CDR2-201ENST00000268383 TRIM26Q12899 539 aaPredicted RBP35.64■■■■□ 3.3
CDR2-201ENST00000268383 RB1CC1Q8TDY2 1594 aa35.62■■■■□ 3.29
CDR2-201ENST00000268383 EHMT2Q96KQ7 1210 aa35.59■■■■□ 3.29
CDR2-201ENST00000268383 CECR2Q9BXF3 1484 aa35.38■■■■□ 3.25
CDR2-201ENST00000268383 MROH2BQ7Z745 1585 aa35.2■■■■□ 3.23
CDR2-201ENST00000268383 NACADO15069 1562 aa35.08■■■■□ 3.21
CDR2-201ENST00000268383 WIZO95785 1651 aa35.06■■■■□ 3.2
CDR2-201ENST00000268383 ZEB1P37275 1124 aaPredicted RBP34.79■■■■□ 3.16
CDR2-201ENST00000268383 BAZ1AQ9NRL2 1556 aaPredicted RBP34.63■■■■□ 3.13
CDR2-201ENST00000268383 EIF4G1Q04637 1599 aaKnown RBP34.5■■■■□ 3.11
CDR2-201ENST00000268383 ABCC8Q09428 1581 aa34.47■■■■□ 3.11
CDR2-201ENST00000268383 TTBK1Q5TCY1 1321 aaPredicted RBP34.47■■■■□ 3.11
CDR2-201ENST00000268383 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP34.46■■■■□ 3.11
CDR2-201ENST00000268383 CCDC88BA6NC98 1476 aa34.37■■■■□ 3.09
CDR2-201ENST00000268383 TOP2AP11388 1531 aaKnown RBP34.29■■■■□ 3.08
CDR2-201ENST00000268383 SMARCA4P51532 1647 aa34.27■■■■□ 3.08
CDR2-201ENST00000268383 CCER1Q8TC90 406 aaPredicted RBP34.25■■■■□ 3.07
CDR2-201ENST00000268383 SMARCA2P51531 1590 aa34.2■■■■□ 3.07
CDR2-201ENST00000268383 SOGA1O94964 1423 aa34.2■■■■□ 3.07
CDR2-201ENST00000268383 UNC13AQ9UPW8 1703 aa34.18■■■■□ 3.06
CDR2-201ENST00000268383 PABPN1Q86U42 306 aaKnown RBP eCLIP34.12■■■■□ 3.05
CDR2-201ENST00000268383 SCAF1Q9H7N4 1312 aaKnown RBP34.09■■■■□ 3.05
CDR2-201ENST00000268383 RUSC2Q8N2Y8 1516 aa34.08■■■■□ 3.05
CDR2-201ENST00000268383 CEP162Q5TB80 1403 aa34.06■■■■□ 3.04
CDR2-201ENST00000268383 UBTFP17480 764 aaKnown RBP33.99■■■■□ 3.03
CDR2-201ENST00000268383 CSRNP3Q8WYN3 585 aa33.94■■■■□ 3.02
CDR2-201ENST00000268383 WRNQ14191 1432 aaPredicted RBP eCLIP33.9■■■■□ 3.02
CDR2-201ENST00000268383 TNIKQ9UKE5 1360 aa33.87■■■■□ 3.01
CDR2-201ENST00000268383 BICRAQ9NZM4 1560 aa33.71■■■□□ 2.99
CDR2-201ENST00000268383 DIEXFQ68CQ4 756 aaKnown RBP33.69■■■□□ 2.98
CDR2-201ENST00000268383 EEA1Q15075 1411 aa33.66■■■□□ 2.98
CDR2-201ENST00000268383 GOLGA3Q08378 1498 aa33.63■■■□□ 2.97
CDR2-201ENST00000268383 NEUROD1Q13562 356 aa33.63■■■□□ 2.97
CDR2-201ENST00000268383 RANGAP1P46060 587 aaPredicted RBP33.56■■■□□ 2.96
CDR2-201ENST00000268383 SYNJ1O43426 1573 aa33.55■■■□□ 2.96
CDR2-201ENST00000268383 ACIN1Q9UKV3 1341 aaKnown RBP33.55■■■□□ 2.96
CDR2-201ENST00000268383 HNRNPUL2Q1KMD3 747 aaKnown RBP33.51■■■□□ 2.95
CDR2-201ENST00000268383 PEG3Q9GZU2 1588 aa33.41■■■□□ 2.94
CDR2-201ENST00000268383 CEP164Q9UPV0 1460 aa33.38■■■□□ 2.93
CDR2-201ENST00000268383 ATAD2BQ9ULI0 1458 aa33.36■■■□□ 2.93
CDR2-201ENST00000268383 CLIP1P30622 1438 aa33.36■■■□□ 2.93
CDR2-201ENST00000268383 BAZ1BQ9UIG0 1483 aaKnown RBP33.31■■■□□ 2.92
CDR2-201ENST00000268383 GTF3C3Q9Y5Q9 886 aa33.3■■■□□ 2.92
CDR2-201ENST00000268383 ZNF316A6NFI3 1004 aaPredicted RBP33.29■■■□□ 2.92
CDR2-201ENST00000268383 RAPGEF2Q9Y4G8 1499 aa33.29■■■□□ 2.92
CDR2-201ENST00000268383 KIF21BO75037 1637 aa33.27■■■□□ 2.92
CDR2-201ENST00000268383 PELP1Q8IZL8 1130 aaKnown RBP33.25■■■□□ 2.91
CDR2-201ENST00000268383 CENPBP07199 599 aaPredicted RBP33.21■■■□□ 2.91
CDR2-201ENST00000268383 VPS8Q8N3P4 1428 aa33.17■■■□□ 2.9
CDR2-201ENST00000268383 YTHDC1Q96MU7 727 aaKnown RBP33.16■■■□□ 2.9
CDR2-201ENST00000268383 APLP2Q06481 763 aa33.16■■■□□ 2.9
CDR2-201ENST00000268383 MIER1Q8N108 512 aa33.02■■■□□ 2.88
CDR2-201ENST00000268383 TOP2BQ02880 1626 aa32.96■■■□□ 2.87
CDR2-201ENST00000268383 KANK4Q5T7N3 995 aaPredicted RBP32.86■■■□□ 2.85
CDR2-201ENST00000268383 BIVM-ERCC5R4GMW8 1640 aa32.78■■■□□ 2.84
CDR2-201ENST00000268383 ARAP1Q96P48 1450 aa32.78■■■□□ 2.84
CDR2-201ENST00000268383 PRXQ9BXM0 1461 aa32.76■■■□□ 2.83
CDR2-201ENST00000268383 CUX1P39880 1505 aa32.71■■■□□ 2.83
CDR2-201ENST00000268383 ERICH3Q5RHP9 1530 aa32.65■■■□□ 2.82
CDR2-201ENST00000268383 DHX57Q6P158 1386 aaKnown RBP32.65■■■□□ 2.82
CDR2-201ENST00000268383 ITGAEP38570 1179 aa32.6■■■□□ 2.81
CDR2-201ENST00000268383 KIF27Q86VH2 1401 aa32.56■■■□□ 2.8
CDR2-201ENST00000268383 NCAPD3P42695 1498 aa32.55■■■□□ 2.8
CDR2-201ENST00000268383 HMGXB3Q12766 1538 aa32.49■■■□□ 2.79
CDR2-201ENST00000268383 ARHGAP35Q9NRY4 1499 aa32.46■■■□□ 2.79
CDR2-201ENST00000268383 CFTRP13569 1480 aa32.42■■■□□ 2.78
CDR2-201ENST00000268383 RRBP1Q9P2E9 1410 aaKnown RBP32.4■■■□□ 2.78
CDR2-201ENST00000268383 CLSPNQ9HAW4 1339 aa32.38■■■□□ 2.77
CDR2-201ENST00000268383 CCNB3Q8WWL7 1395 aa32.36■■■□□ 2.77
CDR2-201ENST00000268383 CUX2O14529 1486 aa32.32■■■□□ 2.76
CDR2-201ENST00000268383 IGF1RP08069 1367 aa32.27■■■□□ 2.76
CDR2-201ENST00000268383 P3H3Q8IVL6 736 aa32.22■■■□□ 2.75
CDR2-201ENST00000268383 RAB3GAP2Q9H2M9 1393 aa32.18■■■□□ 2.74
CDR2-201ENST00000268383 ATP1B4Q9UN42 357 aaPredicted RBP32.15■■■□□ 2.74
CDR2-201ENST00000268383 CARMIL1Q5VZK9 1371 aa32.14■■■□□ 2.74
CDR2-201ENST00000268383 FGD5Q6ZNL6 1462 aa32.1■■■□□ 2.73
CDR2-201ENST00000268383 FAM50AQ14320 339 aaKnown RBP32.09■■■□□ 2.73
CDR2-201ENST00000268383 KCNH8Q96L42 1107 aa32.07■■■□□ 2.73
CDR2-201ENST00000268383 CADPSQ9ULU8 1353 aa32.07■■■□□ 2.72
CDR2-201ENST00000268383 TIAM1Q13009 1591 aa32.07■■■□□ 2.72
CDR2-201ENST00000268383 PHLDB1Q86UU1 1377 aa32.05■■■□□ 2.72
CDR2-201ENST00000268383 SIN3AQ96ST3 1273 aa32.04■■■□□ 2.72
Retrieved 100 of 20,778 RNA–protein pairs in 92.4 ms