RNA–Protein interactions for RNA: ENST00000409747.5

CBX3-203, Transcript of chromobox 3, humanhuman

TSL 1 (best) BASIC

Gene CBX3, Length 1,717 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3-203ENST00000409747 NISCHQ9Y2I1 1504 aa36.68■■■■□ 3.46
CBX3-203ENST00000409747 CCDC180Q9P1Z9 1646 aa32.92■■■□□ 2.86
CBX3-203ENST00000409747 ABCC9O60706 1549 aa32.63■■■□□ 2.81
CBX3-203ENST00000409747 RB1CC1Q8TDY2 1594 aa31.23■■■□□ 2.59
CBX3-203ENST00000409747 NACADO15069 1562 aa31.06■■■□□ 2.56
CBX3-203ENST00000409747 DCAF8L2P0C7V8 631 aa30.81■■■□□ 2.52
CBX3-203ENST00000409747 MYO15BQ96JP2 1530 aa30.71■■■□□ 2.51
CBX3-203ENST00000409747 UNC13AQ9UPW8 1703 aa30.48■■■□□ 2.47
CBX3-203ENST00000409747 ZCCHC6Q5VYS8 1495 aaKnown RBP30.46■■■□□ 2.47
CBX3-203ENST00000409747 DCAF1Q9Y4B6 1507 aa30.37■■■□□ 2.45
CBX3-203ENST00000409747 PABPN1Q86U42 306 aaKnown RBP eCLIP30.36■■■□□ 2.45
CBX3-203ENST00000409747 DNAJC5BQ9UF47 199 aa30.35■■■□□ 2.45
CBX3-203ENST00000409747 BICRAQ9NZM4 1560 aa30.23■■■□□ 2.43
CBX3-203ENST00000409747 SHROOM4Q9ULL8 1493 aa29.99■■■□□ 2.39
CBX3-203ENST00000409747 SCRIBQ14160 1630 aa29.94■■■□□ 2.38
CBX3-203ENST00000409747 CC2D2AQ9P2K1 1620 aa29.52■■■□□ 2.32
CBX3-203ENST00000409747 EIF4G1Q04637 1599 aaKnown RBP29.52■■■□□ 2.32
CBX3-203ENST00000409747 CECR2Q9BXF3 1484 aa29.41■■■□□ 2.3
CBX3-203ENST00000409747 NCAPD3P42695 1498 aa28.63■■■□□ 2.17
CBX3-203ENST00000409747 SMARCA4P51532 1647 aa28.6■■■□□ 2.17
CBX3-203ENST00000409747 ATAD2BQ9ULI0 1458 aa28.56■■■□□ 2.16
CBX3-203ENST00000409747 SMARCA2P51531 1590 aa28.55■■■□□ 2.16
CBX3-203ENST00000409747 BAZ1AQ9NRL2 1556 aaPredicted RBP28.51■■■□□ 2.15
CBX3-203ENST00000409747 HMGXB3Q12766 1538 aa28.48■■■□□ 2.15
CBX3-203ENST00000409747 PEG3Q9GZU2 1588 aa28.34■■■□□ 2.13
CBX3-203ENST00000409747 BAZ1BQ9UIG0 1483 aaKnown RBP28.32■■■□□ 2.12
CBX3-203ENST00000409747 MROH2BQ7Z745 1585 aa28.24■■■□□ 2.11
CBX3-203ENST00000409747 ERCC6Q03468 1493 aa28.22■■■□□ 2.11
CBX3-203ENST00000409747 CUX2O14529 1486 aa28.14■■■□□ 2.09
CBX3-203ENST00000409747 NESP48681 1621 aa28.06■■■□□ 2.08
CBX3-203ENST00000409747 LAMC3Q9Y6N6 1575 aa28■■■□□ 2.07
CBX3-203ENST00000409747 WIZO95785 1651 aa27.91■■■□□ 2.06
CBX3-203ENST00000409747 PDS5BQ9NTI5 1447 aa27.82■■■□□ 2.04
CBX3-203ENST00000409747 DNAJC5Q9H3Z4 198 aa27.82■■■□□ 2.04
CBX3-203ENST00000409747 THOC2Q8NI27 1593 aaKnown RBP27.82■■■□□ 2.04
CBX3-203ENST00000409747 KIF21AQ7Z4S6 1674 aa27.77■■■□□ 2.04
CBX3-203ENST00000409747 CADPSQ9ULU8 1353 aa27.76■■■□□ 2.03
CBX3-203ENST00000409747 RSF1Q96T23 1441 aaPredicted RBP27.72■■■□□ 2.03
CBX3-203ENST00000409747 TOP2AP11388 1531 aaKnown RBP27.63■■■□□ 2.01
CBX3-203ENST00000409747 MRC2Q9UBG0 1479 aa27.56■■■□□ 2
CBX3-203ENST00000409747 WDR62O43379 1518 aa27.49■■□□□ 1.99
CBX3-203ENST00000409747 CFTRP13569 1480 aa27.49■■□□□ 1.99
CBX3-203ENST00000409747 CEP164Q9UPV0 1460 aa27.49■■□□□ 1.99
CBX3-203ENST00000409747 FANCD2Q9BXW9 1451 aa27.45■■□□□ 1.99
CBX3-203ENST00000409747 PRDM2Q13029 1718 aa27.3■■□□□ 1.96
CBX3-203ENST00000409747 CCDC88BA6NC98 1476 aa27.26■■□□□ 1.95
CBX3-203ENST00000409747 URB2Q14146 1524 aaKnown RBP27.19■■□□□ 1.94
CBX3-203ENST00000409747 ABCC8Q09428 1581 aa26.97■■□□□ 1.91
CBX3-203ENST00000409747 TOPBP1Q92547 1522 aa26.95■■□□□ 1.9
CBX3-203ENST00000409747 IFT140Q96RY7 1462 aa26.94■■□□□ 1.9
CBX3-203ENST00000409747 DNMBPQ6XZF7 1577 aa26.9■■□□□ 1.9
CBX3-203ENST00000409747 OSCARQ8IYS5 282 aa26.82■■□□□ 1.88
CBX3-203ENST00000409747 ZNF608Q9ULD9 1512 aaPredicted RBP26.81■■□□□ 1.88
CBX3-203ENST00000409747 EIF4G3O43432 1585 aaKnown RBP26.73■■□□□ 1.87
CBX3-203ENST00000409747 TARBP1Q13395 1621 aaKnown RBP26.7■■□□□ 1.86
CBX3-203ENST00000409747 POLA1P09884 1462 aaPredicted RBP26.68■■□□□ 1.86
CBX3-203ENST00000409747 TRIM41Q8WV44 630 aa26.66■■□□□ 1.86
CBX3-203ENST00000409747 AQRO60306 1485 aaKnown RBP eCLIP26.59■■□□□ 1.852e-9■■■□□ 17.3
CBX3-203ENST00000409747 SUPT5HO00267 1087 aaKnown RBP26.58■■□□□ 1.85
CBX3-203ENST00000409747 SOGA1O94964 1423 aa26.56■■□□□ 1.84
CBX3-203ENST00000409747 FGD5Q6ZNL6 1462 aa26.54■■□□□ 1.84
CBX3-203ENST00000409747 RAD54L2Q9Y4B4 1467 aa26.54■■□□□ 1.84
CBX3-203ENST00000409747 WDR97A6NE52 1622 aa26.54■■□□□ 1.84
CBX3-203ENST00000409747 CUX1P39880 1505 aa26.53■■□□□ 1.84
CBX3-203ENST00000409747 CHD1O14646 1710 aa26.49■■□□□ 1.83
CBX3-203ENST00000409747 RIMBP3CA6NJZ7 1639 aa26.47■■□□□ 1.83
CBX3-203ENST00000409747 RIMBP3BA6NNM3 1639 aa26.47■■□□□ 1.83
CBX3-203ENST00000409747 RIMBP3Q9UFD9 1639 aa26.47■■□□□ 1.83
CBX3-203ENST00000409747 TDRD9Q8NDG6 1382 aaKnown RBP26.45■■□□□ 1.82
CBX3-203ENST00000409747 ARHGEF11O15085 1522 aa26.41■■□□□ 1.82
CBX3-203ENST00000409747 FBLN2P98095 1184 aa26.38■■□□□ 1.81
CBX3-203ENST00000409747 SNAPC4Q5SXM2 1469 aa26.36■■□□□ 1.81
CBX3-203ENST00000409747 MAGI1Q96QZ7 1491 aaPredicted RBP26.35■■□□□ 1.81
CBX3-203ENST00000409747 GRIN2BQ13224 1484 aa26.34■■□□□ 1.81
CBX3-203ENST00000409747 ABCA10Q8WWZ4 1543 aa26.28■■□□□ 1.8
CBX3-203ENST00000409747 PBRM1Q86U86 1689 aa26.26■■□□□ 1.79
CBX3-203ENST00000409747 GAPVD1Q14C86 1478 aa26.26■■□□□ 1.79
CBX3-203ENST00000409747 CHMP7Q8WUX9 453 aaPredicted RBP26.25■■□□□ 1.79
CBX3-203ENST00000409747 SYNJ2O15056 1496 aa26.23■■□□□ 1.79
CBX3-203ENST00000409747 SYNJ1O43426 1573 aa26.23■■□□□ 1.79
CBX3-203ENST00000409747 ABCA5Q8WWZ7 1642 aa26.23■■□□□ 1.79
CBX3-203ENST00000409747 WRNQ14191 1432 aaPredicted RBP eCLIP26.21■■□□□ 1.79
CBX3-203ENST00000409747 BIVM-ERCC5R4GMW8 1640 aa26.21■■□□□ 1.79
CBX3-203ENST00000409747 TOP2BQ02880 1626 aa26.2■■□□□ 1.78
CBX3-203ENST00000409747 CLASP1Q7Z460 1538 aa26.2■■□□□ 1.78
CBX3-203ENST00000409747 CYB5RLQ6IPT4 315 aa26.14■■□□□ 1.78
CBX3-203ENST00000409747 ARAP1Q96P48 1450 aa26.14■■□□□ 1.77
CBX3-203ENST00000409747 ADAMTS12P58397 1594 aa26.02■■□□□ 1.76
CBX3-203ENST00000409747 GRIN2AQ12879 1464 aa25.99■■□□□ 1.75
CBX3-203ENST00000409747 ERICH3Q5RHP9 1530 aa25.97■■□□□ 1.75
CBX3-203ENST00000409747 FHAD1B1AJZ9 1412 aa25.94■■□□□ 1.74
CBX3-203ENST00000409747 NUP160Q12769 1436 aa25.89■■□□□ 1.74
CBX3-203ENST00000409747 CEP170Q5SW79 1584 aa25.87■■□□□ 1.73
CBX3-203ENST00000409747 TRHP20396 242 aaPredicted RBP25.82■■□□□ 1.72
CBX3-203ENST00000409747 SHROOM2Q13796 1616 aa25.78■■□□□ 1.72
CBX3-203ENST00000409747 ERCC6L2Q5T890 1561 aa25.73■■□□□ 1.71
CBX3-203ENST00000409747 KIF27Q86VH2 1401 aa25.69■■□□□ 1.7
CBX3-203ENST00000409747 CUL7Q14999 1698 aa25.66■■□□□ 1.7
CBX3-203ENST00000409747 RUSC2Q8N2Y8 1516 aa25.65■■□□□ 1.7
CBX3-203ENST00000409747 PRG4Q92954 1404 aaPredicted RBP25.61■■□□□ 1.69
Retrieved 100 of 20,778 RNA–protein pairs in 8.4 ms