RNA–Protein interactions for RNA: ENST00000337620.8

CBX3-201, Transcript of chromobox 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CBX3, Length 2,128 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3-201ENST00000337620 NISCHQ9Y2I1 1504 aa33.55■■■□□ 2.96
CBX3-201ENST00000337620 CCDC180Q9P1Z9 1646 aa29.29■■■□□ 2.28
CBX3-201ENST00000337620 ZCCHC6Q5VYS8 1495 aaKnown RBP28.13■■■□□ 2.09
CBX3-201ENST00000337620 ABCC9O60706 1549 aa27.96■■■□□ 2.07
CBX3-201ENST00000337620 DCAF8L2P0C7V8 631 aa27.94■■■□□ 2.06
CBX3-201ENST00000337620 DCAF1Q9Y4B6 1507 aa27.7■■■□□ 2.02
CBX3-201ENST00000337620 MYO15BQ96JP2 1530 aa27.42■■□□□ 1.98
CBX3-201ENST00000337620 SHROOM4Q9ULL8 1493 aa27.36■■□□□ 1.97
CBX3-201ENST00000337620 NACADO15069 1562 aa27.35■■□□□ 1.97
CBX3-201ENST00000337620 RB1CC1Q8TDY2 1594 aa27.18■■□□□ 1.94
CBX3-201ENST00000337620 SCRIBQ14160 1630 aa26.99■■□□□ 1.91
CBX3-201ENST00000337620 UNC13AQ9UPW8 1703 aa26.6■■□□□ 1.85
CBX3-201ENST00000337620 PABPN1Q86U42 306 aaKnown RBP eCLIP26.38■■□□□ 1.81
CBX3-201ENST00000337620 BICRAQ9NZM4 1560 aa26.34■■□□□ 1.81
CBX3-201ENST00000337620 SUPT5HO00267 1087 aaKnown RBP26.27■■□□□ 1.8
CBX3-201ENST00000337620 CECR2Q9BXF3 1484 aa26.12■■□□□ 1.77
CBX3-201ENST00000337620 RSF1Q96T23 1441 aaPredicted RBP25.98■■□□□ 1.75
CBX3-201ENST00000337620 MROH2BQ7Z745 1585 aa25.94■■□□□ 1.74
CBX3-201ENST00000337620 BAZ1AQ9NRL2 1556 aaPredicted RBP25.92■■□□□ 1.74
CBX3-201ENST00000337620 SMARCA4P51532 1647 aa25.83■■□□□ 1.72
CBX3-201ENST00000337620 WIZO95785 1651 aa25.72■■□□□ 1.71
CBX3-201ENST00000337620 EIF4G1Q04637 1599 aaKnown RBP25.58■■□□□ 1.69
CBX3-201ENST00000337620 PEG3Q9GZU2 1588 aa25.48■■□□□ 1.67
CBX3-201ENST00000337620 ATAD2BQ9ULI0 1458 aa25.46■■□□□ 1.67
CBX3-201ENST00000337620 SMARCA2P51531 1590 aa25.43■■□□□ 1.66
CBX3-201ENST00000337620 TOP2AP11388 1531 aaKnown RBP25.42■■□□□ 1.66
CBX3-201ENST00000337620 BAZ1BQ9UIG0 1483 aaKnown RBP25.33■■□□□ 1.64
CBX3-201ENST00000337620 CC2D2AQ9P2K1 1620 aa25.26■■□□□ 1.63
CBX3-201ENST00000337620 NCAPD3P42695 1498 aa25.25■■□□□ 1.63
CBX3-201ENST00000337620 CCDC88BA6NC98 1476 aa25.19■■□□□ 1.62
CBX3-201ENST00000337620 HMGXB3Q12766 1538 aa25.18■■□□□ 1.62
CBX3-201ENST00000337620 CHIC1Q5VXU3 224 aa25■■□□□ 1.59
CBX3-201ENST00000337620 DNAJC5BQ9UF47 199 aa24.83■■□□□ 1.57
CBX3-201ENST00000337620 TRIM41Q8WV44 630 aa24.68■■□□□ 1.54
CBX3-201ENST00000337620 CFTRP13569 1480 aa24.65■■□□□ 1.54
CBX3-201ENST00000337620 CADPSQ9ULU8 1353 aa24.63■■□□□ 1.53
CBX3-201ENST00000337620 ABCC8Q09428 1581 aa24.62■■□□□ 1.53
CBX3-201ENST00000337620 NESP48681 1621 aa24.48■■□□□ 1.51
CBX3-201ENST00000337620 WRNQ14191 1432 aaPredicted RBP eCLIP24.47■■□□□ 1.51
CBX3-201ENST00000337620 PRDM2Q13029 1718 aa24.47■■□□□ 1.51
CBX3-201ENST00000337620 LAMC3Q9Y6N6 1575 aa24.42■■□□□ 1.5
CBX3-201ENST00000337620 SYNJ1O43426 1573 aa24.36■■□□□ 1.49
CBX3-201ENST00000337620 FANCD2Q9BXW9 1451 aa24.36■■□□□ 1.49
CBX3-201ENST00000337620 PDS5BQ9NTI5 1447 aa24.28■■□□□ 1.48
CBX3-201ENST00000337620 FAM9AQ8IZU1 332 aaPredicted RBP24.27■■□□□ 1.48
CBX3-201ENST00000337620 TOP2BQ02880 1626 aa24.26■■□□□ 1.47
CBX3-201ENST00000337620 CUX1P39880 1505 aa24.25■■□□□ 1.47
CBX3-201ENST00000337620 BIVM-ERCC5R4GMW8 1640 aa24.22■■□□□ 1.47
CBX3-201ENST00000337620 CEP164Q9UPV0 1460 aa24.22■■□□□ 1.47
CBX3-201ENST00000337620 KIF21AQ7Z4S6 1674 aa24.15■■□□□ 1.46
CBX3-201ENST00000337620 SOGA1O94964 1423 aa24.14■■□□□ 1.45
CBX3-201ENST00000337620 LOC105371045A0A1W2PR82 267 aa24.08■■□□□ 1.45
CBX3-201ENST00000337620 DNMBPQ6XZF7 1577 aa24.08■■□□□ 1.44
CBX3-201ENST00000337620 TOPBP1Q92547 1522 aa24.06■■□□□ 1.44
CBX3-201ENST00000337620 RUSC2Q8N2Y8 1516 aa24.05■■□□□ 1.44
CBX3-201ENST00000337620 URB2Q14146 1524 aaKnown RBP24.05■■□□□ 1.44
CBX3-201ENST00000337620 FGD5Q6ZNL6 1462 aa24.03■■□□□ 1.44
CBX3-201ENST00000337620 EEA1Q15075 1411 aa24.01■■□□□ 1.43
CBX3-201ENST00000337620 ERCC6Q03468 1493 aa24■■□□□ 1.43
CBX3-201ENST00000337620 EHMT2Q96KQ7 1210 aa23.98■■□□□ 1.43
CBX3-201ENST00000337620 CSRNP3Q8WYN3 585 aa23.96■■□□□ 1.43
CBX3-201ENST00000337620 MRC2Q9UBG0 1479 aa23.96■■□□□ 1.43
CBX3-201ENST00000337620 POLA1P09884 1462 aaPredicted RBP23.94■■□□□ 1.42
CBX3-201ENST00000337620 RAD54L2Q9Y4B4 1467 aa23.88■■□□□ 1.41
CBX3-201ENST00000337620 KIF27Q86VH2 1401 aa23.88■■□□□ 1.41
CBX3-201ENST00000337620 CUX2O14529 1486 aa23.86■■□□□ 1.41
CBX3-201ENST00000337620 WDR62O43379 1518 aa23.81■■□□□ 1.4
CBX3-201ENST00000337620 ABCA10Q8WWZ4 1543 aa23.79■■□□□ 1.4
CBX3-201ENST00000337620 THOC2Q8NI27 1593 aaKnown RBP23.77■■□□□ 1.4
CBX3-201ENST00000337620 TARBP1Q13395 1621 aaKnown RBP23.69■■□□□ 1.38
CBX3-201ENST00000337620 GOLGA3Q08378 1498 aa23.69■■□□□ 1.38
CBX3-201ENST00000337620 TDRD9Q8NDG6 1382 aaKnown RBP23.69■■□□□ 1.38
CBX3-201ENST00000337620 WDR97A6NE52 1622 aa23.69■■□□□ 1.38
CBX3-201ENST00000337620 UBTFP17480 764 aaKnown RBP23.69■■□□□ 1.38
CBX3-201ENST00000337620 KIF21BO75037 1637 aa23.68■■□□□ 1.38
CBX3-201ENST00000337620 IGF1RP08069 1367 aa23.68■■□□□ 1.38
CBX3-201ENST00000337620 PRXQ9BXM0 1461 aa23.64■■□□□ 1.37
CBX3-201ENST00000337620 RAPGEF2Q9Y4G8 1499 aa23.64■■□□□ 1.37
CBX3-201ENST00000337620 IFT140Q96RY7 1462 aa23.63■■□□□ 1.37
CBX3-201ENST00000337620 GAPVD1Q14C86 1478 aa23.6■■□□□ 1.37
CBX3-201ENST00000337620 ABCA5Q8WWZ7 1642 aa23.59■■□□□ 1.37
CBX3-201ENST00000337620 TNIKQ9UKE5 1360 aa23.58■■□□□ 1.37
CBX3-201ENST00000337620 CARMIL1Q5VZK9 1371 aa23.58■■□□□ 1.37
CBX3-201ENST00000337620 ERICH3Q5RHP9 1530 aa23.56■■□□□ 1.36
CBX3-201ENST00000337620 AQRO60306 1485 aaKnown RBP eCLIP23.56■■□□□ 1.362e-9■■■□□ 17.3
CBX3-201ENST00000337620 ZNF608Q9ULD9 1512 aaPredicted RBP23.54■■□□□ 1.36
CBX3-201ENST00000337620 CUL7Q14999 1698 aa23.47■■□□□ 1.35
CBX3-201ENST00000337620 CEP162Q5TB80 1403 aa23.46■■□□□ 1.35
CBX3-201ENST00000337620 PBRM1Q86U86 1689 aa23.45■■□□□ 1.34
CBX3-201ENST00000337620 GRIN2BQ13224 1484 aa23.44■■□□□ 1.34
CBX3-201ENST00000337620 EIF4G3O43432 1585 aaKnown RBP23.42■■□□□ 1.34
CBX3-201ENST00000337620 RANGAP1P46060 587 aaPredicted RBP23.4■■□□□ 1.34
CBX3-201ENST00000337620 FHAD1B1AJZ9 1412 aa23.34■■□□□ 1.33
CBX3-201ENST00000337620 CLIP1P30622 1438 aa23.33■■□□□ 1.32
CBX3-201ENST00000337620 SNAPC4Q5SXM2 1469 aa23.31■■□□□ 1.32
CBX3-201ENST00000337620 ADAMTS12P58397 1594 aa23.3■■□□□ 1.32
CBX3-201ENST00000337620 MAGI1Q96QZ7 1491 aaPredicted RBP23.24■■□□□ 1.31
CBX3-201ENST00000337620 CHMP7Q8WUX9 453 aaPredicted RBP23.2■■□□□ 1.3
CBX3-201ENST00000337620 FBLN2P98095 1184 aa23.19■■□□□ 1.3
CBX3-201ENST00000337620 CTTNBP2Q8WZ74 1663 aa23.19■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms