RNA–Protein interactions for RNA: ENST00000585437.1

ATG4D-202, Transcript of autophagy related 4D cysteine peptidase, humanhuman

TSL 5

Gene ATG4D, Length 377 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4D-202ENST00000585437 NISCHQ9Y2I1 1504 aa21.44■■□□□ 1.02
ATG4D-202ENST00000585437 CCDC180Q9P1Z9 1646 aa19.24■□□□□ 0.67
ATG4D-202ENST00000585437 ABCC9O60706 1549 aa18.67■□□□□ 0.58
ATG4D-202ENST00000585437 RB1CC1Q8TDY2 1594 aa18.04■□□□□ 0.48
ATG4D-202ENST00000585437 NACADO15069 1562 aa18■□□□□ 0.47
ATG4D-202ENST00000585437 MYO15BQ96JP2 1530 aa17.92■□□□□ 0.46
ATG4D-202ENST00000585437 ZCCHC6Q5VYS8 1495 aaKnown RBP17.88■□□□□ 0.45
ATG4D-202ENST00000585437 DCAF1Q9Y4B6 1507 aa17.81■□□□□ 0.44
ATG4D-202ENST00000585437 UNC13AQ9UPW8 1703 aa17.78■□□□□ 0.44
ATG4D-202ENST00000585437 DCAF8L2P0C7V8 631 aa17.63■□□□□ 0.41
ATG4D-202ENST00000585437 BICRAQ9NZM4 1560 aa17.54■□□□□ 0.4
ATG4D-202ENST00000585437 SCRIBQ14160 1630 aa17.41■□□□□ 0.38
ATG4D-202ENST00000585437 SHROOM4Q9ULL8 1493 aa17.37■□□□□ 0.37
ATG4D-202ENST00000585437 PABPN1Q86U42 306 aaKnown RBP eCLIP17.31■□□□□ 0.36
ATG4D-202ENST00000585437 DNAJC5BQ9UF47 199 aa17.2■□□□□ 0.34
ATG4D-202ENST00000585437 EIF4G1Q04637 1599 aaKnown RBP17.04■□□□□ 0.32
ATG4D-202ENST00000585437 CC2D2AQ9P2K1 1620 aa16.99■□□□□ 0.31
ATG4D-202ENST00000585437 CECR2Q9BXF3 1484 aa16.8■□□□□ 0.28
ATG4D-202ENST00000585437 SMARCA4P51532 1647 aa16.7■□□□□ 0.26
ATG4D-202ENST00000585437 BAZ1AQ9NRL2 1556 aaPredicted RBP16.64■□□□□ 0.25
ATG4D-202ENST00000585437 PEG3Q9GZU2 1588 aa16.59■□□□□ 0.25
ATG4D-202ENST00000585437 SMARCA2P51531 1590 aa16.57■□□□□ 0.24
ATG4D-202ENST00000585437 HMGXB3Q12766 1538 aa16.56■□□□□ 0.24
ATG4D-202ENST00000585437 NCAPD3P42695 1498 aa16.56■□□□□ 0.24
ATG4D-202ENST00000585437 ATAD2BQ9ULI0 1458 aa16.55■□□□□ 0.24
ATG4D-202ENST00000585437 MROH2BQ7Z745 1585 aa16.51■□□□□ 0.23
ATG4D-202ENST00000585437 BAZ1BQ9UIG0 1483 aaKnown RBP16.4■□□□□ 0.22
ATG4D-202ENST00000585437 WIZO95785 1651 aa16.37■□□□□ 0.21
ATG4D-202ENST00000585437 RSF1Q96T23 1441 aaPredicted RBP16.25■□□□□ 0.19
ATG4D-202ENST00000585437 LAMC3Q9Y6N6 1575 aa16.2■□□□□ 0.18
ATG4D-202ENST00000585437 TOP2AP11388 1531 aaKnown RBP16.19■□□□□ 0.18
ATG4D-202ENST00000585437 NESP48681 1621 aa16.16■□□□□ 0.18
ATG4D-202ENST00000585437 KIF21AQ7Z4S6 1674 aa16.11■□□□□ 0.17
ATG4D-202ENST00000585437 THOC2Q8NI27 1593 aaKnown RBP16.08■□□□□ 0.16
ATG4D-202ENST00000585437 ERCC6Q03468 1493 aa16.07■□□□□ 0.16
ATG4D-202ENST00000585437 PRDM2Q13029 1718 aa16.05■□□□□ 0.16
ATG4D-202ENST00000585437 CUX2O14529 1486 aa16.03■□□□□ 0.16
ATG4D-202ENST00000585437 CADPSQ9ULU8 1353 aa16.01■□□□□ 0.15
ATG4D-202ENST00000585437 PDS5BQ9NTI5 1447 aa15.97■□□□□ 0.15
ATG4D-202ENST00000585437 CFTRP13569 1480 aa15.97■□□□□ 0.15
ATG4D-202ENST00000585437 CCDC88BA6NC98 1476 aa15.92■□□□□ 0.14
ATG4D-202ENST00000585437 WDR62O43379 1518 aa15.89■□□□□ 0.13
ATG4D-202ENST00000585437 FANCD2Q9BXW9 1451 aa15.87■□□□□ 0.13
ATG4D-202ENST00000585437 MRC2Q9UBG0 1479 aa15.87■□□□□ 0.13
ATG4D-202ENST00000585437 CEP164Q9UPV0 1460 aa15.87■□□□□ 0.13
ATG4D-202ENST00000585437 URB2Q14146 1524 aaKnown RBP15.75■□□□□ 0.11
ATG4D-202ENST00000585437 DNMBPQ6XZF7 1577 aa15.65■□□□□ 0.1
ATG4D-202ENST00000585437 TOPBP1Q92547 1522 aa15.63■□□□□ 0.09
ATG4D-202ENST00000585437 ABCC8Q09428 1581 aa15.62■□□□□ 0.09
ATG4D-202ENST00000585437 SUPT5HO00267 1087 aaKnown RBP15.58■□□□□ 0.08
ATG4D-202ENST00000585437 TARBP1Q13395 1621 aaKnown RBP15.55■□□□□ 0.08
ATG4D-202ENST00000585437 IFT140Q96RY7 1462 aa15.52■□□□□ 0.08
ATG4D-202ENST00000585437 DNAJC5Q9H3Z4 198 aa15.52■□□□□ 0.08
ATG4D-202ENST00000585437 EIF4G3O43432 1585 aaKnown RBP15.5■□□□□ 0.07
ATG4D-202ENST00000585437 CUX1P39880 1505 aa15.5■□□□□ 0.07
ATG4D-202ENST00000585437 POLA1P09884 1462 aaPredicted RBP15.49■□□□□ 0.07
ATG4D-202ENST00000585437 WDR97A6NE52 1622 aa15.49■□□□□ 0.07
ATG4D-202ENST00000585437 ZNF608Q9ULD9 1512 aaPredicted RBP15.46■□□□□ 0.07
ATG4D-202ENST00000585437 BIVM-ERCC5R4GMW8 1640 aa15.44■□□□□ 0.06
ATG4D-202ENST00000585437 FGD5Q6ZNL6 1462 aa15.44■□□□□ 0.06
ATG4D-202ENST00000585437 TOP2BQ02880 1626 aa15.39■□□□□ 0.05
ATG4D-202ENST00000585437 SYNJ1O43426 1573 aa15.37■□□□□ 0.05
ATG4D-202ENST00000585437 RAD54L2Q9Y4B4 1467 aa15.37■□□□□ 0.05
ATG4D-202ENST00000585437 CHD1O14646 1710 aa15.35■□□□□ 0.05
ATG4D-202ENST00000585437 PBRM1Q86U86 1689 aa15.35■□□□□ 0.05
ATG4D-202ENST00000585437 SOGA1O94964 1423 aa15.34■□□□□ 0.05
ATG4D-202ENST00000585437 ABCA5Q8WWZ7 1642 aa15.34■□□□□ 0.05
ATG4D-202ENST00000585437 WRNQ14191 1432 aaPredicted RBP eCLIP15.31■□□□□ 0.04
ATG4D-202ENST00000585437 AQRO60306 1485 aaKnown RBP eCLIP15.31■□□□□ 0.04
ATG4D-202ENST00000585437 ABCA10Q8WWZ4 1543 aa15.31■□□□□ 0.04
ATG4D-202ENST00000585437 TDRD9Q8NDG6 1382 aaKnown RBP15.24■□□□□ 0.03
ATG4D-202ENST00000585437 GRIN2BQ13224 1484 aa15.23■□□□□ 0.03
ATG4D-202ENST00000585437 MAGI1Q96QZ7 1491 aaPredicted RBP15.23■□□□□ 0.03
ATG4D-202ENST00000585437 SNAPC4Q5SXM2 1469 aa15.22■□□□□ 0.03
ATG4D-202ENST00000585437 GAPVD1Q14C86 1478 aa15.21■□□□□ 0.03
ATG4D-202ENST00000585437 OSCARQ8IYS5 282 aa15.18■□□□□ 0.02
ATG4D-202ENST00000585437 ADAMTS12P58397 1594 aa15.17■□□□□ 0.02
ATG4D-202ENST00000585437 SYNJ2O15056 1496 aa15.16■□□□□ 0.02
ATG4D-202ENST00000585437 CLASP1Q7Z460 1538 aa15.15■□□□□ 0.02
ATG4D-202ENST00000585437 RIMBP3CA6NJZ7 1639 aa15.14■□□□□ 0.01
ATG4D-202ENST00000585437 RIMBP3BA6NNM3 1639 aa15.14■□□□□ 0.01
ATG4D-202ENST00000585437 RIMBP3Q9UFD9 1639 aa15.14■□□□□ 0.01
ATG4D-202ENST00000585437 ERICH3Q5RHP9 1530 aa15.14■□□□□ 0.01
ATG4D-202ENST00000585437 ARHGEF11O15085 1522 aa15.1■□□□□ 0.01
ATG4D-202ENST00000585437 GRIN2AQ12879 1464 aa15.06■□□□□ 0
ATG4D-202ENST00000585437 CUL7Q14999 1698 aa15.04■□□□□ -0
ATG4D-202ENST00000585437 CEP170Q5SW79 1584 aa15.03■□□□□ -0
ATG4D-202ENST00000585437 FHAD1B1AJZ9 1412 aa15.03■□□□□ -0
ATG4D-202ENST00000585437 NUP160Q12769 1436 aa15□□□□□ -0.01
ATG4D-202ENST00000585437 SHROOM2Q13796 1616 aa15□□□□□ -0.01
ATG4D-202ENST00000585437 FBLN2P98095 1184 aa15□□□□□ -0.01
ATG4D-202ENST00000585437 CHMP7Q8WUX9 453 aaPredicted RBP14.99□□□□□ -0.01
ATG4D-202ENST00000585437 KIF27Q86VH2 1401 aa14.97□□□□□ -0.01
ATG4D-202ENST00000585437 RUSC2Q8N2Y8 1516 aa14.97□□□□□ -0.01
ATG4D-202ENST00000585437 ARAP1Q96P48 1450 aa14.96□□□□□ -0.01
ATG4D-202ENST00000585437 IGF1RP08069 1367 aa14.91□□□□□ -0.02
ATG4D-202ENST00000585437 ERCC6L2Q5T890 1561 aa14.89□□□□□ -0.03
ATG4D-202ENST00000585437 TRIM41Q8WV44 630 aa14.85□□□□□ -0.03
ATG4D-202ENST00000585437 KIAA0586Q9BVV6 1533 aa14.81□□□□□ -0.04
ATG4D-202ENST00000585437 CARMIL1Q5VZK9 1371 aa14.8□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 62.8 ms