RNA–Protein interactions for RNA: ENST00000530304.5

PCF11-203, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 1 (best)

Gene PCF11, Length 2,649 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-203ENST00000530304 NISCHQ9Y2I1 1504 aa40.14■■■■■ 4.02
PCF11-203ENST00000530304 SHROOM4Q9ULL8 1493 aa34.26■■■■□ 3.08
PCF11-203ENST00000530304 CCDC180Q9P1Z9 1646 aa34.07■■■■□ 3.04
PCF11-203ENST00000530304 ZCCHC6Q5VYS8 1495 aaKnown RBP33.97■■■■□ 3.03
PCF11-203ENST00000530304 SUPT5HO00267 1087 aaKnown RBP33.67■■■□□ 2.98
PCF11-203ENST00000530304 DCAF8L2P0C7V8 631 aa33.22■■■□□ 2.91
PCF11-203ENST00000530304 DCAF1Q9Y4B6 1507 aa32.95■■■□□ 2.87
PCF11-203ENST00000530304 CHIC1Q5VXU3 224 aa32.82■■■□□ 2.85
PCF11-203ENST00000530304 MYO15BQ96JP2 1530 aa32.71■■■□□ 2.83
PCF11-203ENST00000530304 ABCC9O60706 1549 aa32.07■■■□□ 2.72
PCF11-203ENST00000530304 HRCP23327 699 aa32.02■■■□□ 2.72
PCF11-203ENST00000530304 SCRIBQ14160 1630 aa31.93■■■□□ 2.7
PCF11-203ENST00000530304 PCGF6Q9BYE7 350 aa31.92■■■□□ 2.7
PCF11-203ENST00000530304 LOC105371045A0A1W2PR82 267 aa31.85■■■□□ 2.69
PCF11-203ENST00000530304 RSF1Q96T23 1441 aaPredicted RBP31.81■■■□□ 2.68
PCF11-203ENST00000530304 RB1CC1Q8TDY2 1594 aa31.49■■■□□ 2.63
PCF11-203ENST00000530304 NACADO15069 1562 aa31.48■■■□□ 2.63
PCF11-203ENST00000530304 TRIM41Q8WV44 630 aa31.39■■■□□ 2.62
PCF11-203ENST00000530304 TRIM26Q12899 539 aaPredicted RBP31.32■■■□□ 2.6
PCF11-203ENST00000530304 PPARGC1BQ86YN6 1023 aaKnown RBP31.3■■■□□ 2.6
PCF11-203ENST00000530304 CECR2Q9BXF3 1484 aa31.29■■■□□ 2.6
PCF11-203ENST00000530304 MROH2BQ7Z745 1585 aa31.2■■■□□ 2.59
PCF11-203ENST00000530304 FAM9AQ8IZU1 332 aaPredicted RBP31.1■■■□□ 2.57
PCF11-203ENST00000530304 WIZO95785 1651 aa31.05■■■□□ 2.56
PCF11-203ENST00000530304 BAZ1AQ9NRL2 1556 aaPredicted RBP30.87■■■□□ 2.53
PCF11-203ENST00000530304 EHMT2Q96KQ7 1210 aa30.81■■■□□ 2.52
PCF11-203ENST00000530304 ZEB1P37275 1124 aaPredicted RBP30.69■■■□□ 2.5
PCF11-203ENST00000530304 EIF4G1Q04637 1599 aaKnown RBP30.68■■■□□ 2.5
PCF11-203ENST00000530304 TOP2AP11388 1531 aaKnown RBP30.56■■■□□ 2.48
PCF11-203ENST00000530304 SMARCA4P51532 1647 aa30.54■■■□□ 2.48
PCF11-203ENST00000530304 UNC13AQ9UPW8 1703 aa30.49■■■□□ 2.47
PCF11-203ENST00000530304 CCDC88BA6NC98 1476 aa30.45■■■□□ 2.46
PCF11-203ENST00000530304 SMARCA2P51531 1590 aa30.4■■■□□ 2.46
PCF11-203ENST00000530304 ABCC8Q09428 1581 aa30.39■■■□□ 2.45
PCF11-203ENST00000530304 SOGA1O94964 1423 aa30.14■■■□□ 2.42
PCF11-203ENST00000530304 PABPN1Q86U42 306 aaKnown RBP eCLIP30.1■■■□□ 2.41
PCF11-203ENST00000530304 BICRAQ9NZM4 1560 aa30.1■■■□□ 2.41
PCF11-203ENST00000530304 WRNQ14191 1432 aaPredicted RBP eCLIP30.07■■■□□ 2.4
PCF11-203ENST00000530304 CEP162Q5TB80 1403 aa30.05■■■□□ 2.4
PCF11-203ENST00000530304 EEA1Q15075 1411 aa30.02■■■□□ 2.4
PCF11-203ENST00000530304 TNIKQ9UKE5 1360 aa30.02■■■□□ 2.4
PCF11-203ENST00000530304 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP30.01■■■□□ 2.4
PCF11-203ENST00000530304 CSRNP3Q8WYN3 585 aa29.99■■■□□ 2.39
PCF11-203ENST00000530304 RUSC2Q8N2Y8 1516 aa29.98■■■□□ 2.39
PCF11-203ENST00000530304 PEG3Q9GZU2 1588 aa29.97■■■□□ 2.39
PCF11-203ENST00000530304 CCER1Q8TC90 406 aaPredicted RBP29.95■■■□□ 2.38
PCF11-203ENST00000530304 UBTFP17480 764 aaKnown RBP29.88■■■□□ 2.37
PCF11-203ENST00000530304 TTBK1Q5TCY1 1321 aaPredicted RBP29.85■■■□□ 2.37
PCF11-203ENST00000530304 GOLGA3Q08378 1498 aa29.81■■■□□ 2.36
PCF11-203ENST00000530304 ATAD2BQ9ULI0 1458 aa29.73■■■□□ 2.35
PCF11-203ENST00000530304 SYNJ1O43426 1573 aa29.72■■■□□ 2.35
PCF11-203ENST00000530304 BAZ1BQ9UIG0 1483 aaKnown RBP29.65■■■□□ 2.34
PCF11-203ENST00000530304 CEP164Q9UPV0 1460 aa29.63■■■□□ 2.33
PCF11-203ENST00000530304 KIF21BO75037 1637 aa29.6■■■□□ 2.33
PCF11-203ENST00000530304 SCAF1Q9H7N4 1312 aaKnown RBP29.55■■■□□ 2.32
PCF11-203ENST00000530304 CLIP1P30622 1438 aa29.47■■■□□ 2.31
PCF11-203ENST00000530304 DIEXFQ68CQ4 756 aaKnown RBP29.44■■■□□ 2.3
PCF11-203ENST00000530304 RAPGEF2Q9Y4G8 1499 aa29.4■■■□□ 2.3
PCF11-203ENST00000530304 VPS8Q8N3P4 1428 aa29.37■■■□□ 2.29
PCF11-203ENST00000530304 TOP2BQ02880 1626 aa29.36■■■□□ 2.29
PCF11-203ENST00000530304 HNRNPUL2Q1KMD3 747 aaKnown RBP29.26■■■□□ 2.28
PCF11-203ENST00000530304 ACIN1Q9UKV3 1341 aaKnown RBP29.26■■■□□ 2.28
PCF11-203ENST00000530304 BIVM-ERCC5R4GMW8 1640 aa29.25■■■□□ 2.27
PCF11-203ENST00000530304 APLP2Q06481 763 aa29.24■■■□□ 2.27
PCF11-203ENST00000530304 RANGAP1P46060 587 aaPredicted RBP29.22■■■□□ 2.27
PCF11-203ENST00000530304 NEUROD1Q13562 356 aa29.2■■■□□ 2.27
PCF11-203ENST00000530304 ZNF316A6NFI3 1004 aaPredicted RBP29.2■■■□□ 2.26
PCF11-203ENST00000530304 NCAPD3P42695 1498 aa29.14■■■□□ 2.26
PCF11-203ENST00000530304 HMGXB3Q12766 1538 aa29.13■■■□□ 2.25
PCF11-203ENST00000530304 ERICH3Q5RHP9 1530 aa29.11■■■□□ 2.25
PCF11-203ENST00000530304 PRXQ9BXM0 1461 aa29.11■■■□□ 2.25
PCF11-203ENST00000530304 CENPBP07199 599 aaPredicted RBP29.07■■■□□ 2.24
PCF11-203ENST00000530304 PELP1Q8IZL8 1130 aaKnown RBP29.06■■■□□ 2.24
PCF11-203ENST00000530304 CUX1P39880 1505 aa29.04■■■□□ 2.24
PCF11-203ENST00000530304 ARAP1Q96P48 1450 aa28.99■■■□□ 2.23
PCF11-203ENST00000530304 KIF27Q86VH2 1401 aa28.95■■■□□ 2.22
PCF11-203ENST00000530304 CFTRP13569 1480 aa28.94■■■□□ 2.22
PCF11-203ENST00000530304 GTF3C3Q9Y5Q9 886 aa28.91■■■□□ 2.22
PCF11-203ENST00000530304 KANK4Q5T7N3 995 aaPredicted RBP28.86■■■□□ 2.21
PCF11-203ENST00000530304 MIER1Q8N108 512 aa28.78■■■□□ 2.2
PCF11-203ENST00000530304 CLSPNQ9HAW4 1339 aa28.75■■■□□ 2.19
PCF11-203ENST00000530304 DHX57Q6P158 1386 aaKnown RBP28.74■■■□□ 2.19
PCF11-203ENST00000530304 ARHGAP35Q9NRY4 1499 aa28.73■■■□□ 2.19
PCF11-203ENST00000530304 RRBP1Q9P2E9 1410 aaKnown RBP28.71■■■□□ 2.19
PCF11-203ENST00000530304 PRDM2Q13029 1718 aa28.71■■■□□ 2.19
PCF11-203ENST00000530304 YTHDC1Q96MU7 727 aaKnown RBP28.71■■■□□ 2.19
PCF11-203ENST00000530304 IGF1RP08069 1367 aa28.63■■■□□ 2.17
PCF11-203ENST00000530304 CUX2O14529 1486 aa28.63■■■□□ 2.17
PCF11-203ENST00000530304 CADPSQ9ULU8 1353 aa28.59■■■□□ 2.17
PCF11-203ENST00000530304 CCNB3Q8WWL7 1395 aa28.58■■■□□ 2.17
PCF11-203ENST00000530304 CARMIL1Q5VZK9 1371 aa28.51■■■□□ 2.15
PCF11-203ENST00000530304 FGD5Q6ZNL6 1462 aa28.5■■■□□ 2.15
PCF11-203ENST00000530304 ITGAEP38570 1179 aa28.44■■■□□ 2.14
PCF11-203ENST00000530304 TIAM1Q13009 1591 aa28.43■■■□□ 2.14
PCF11-203ENST00000530304 MAP3K1Q13233 1512 aa28.43■■■□□ 2.14
PCF11-203ENST00000530304 LRRC9Q6ZRR7 1453 aa28.34■■■□□ 2.13
PCF11-203ENST00000530304 RAB3GAP2Q9H2M9 1393 aa28.33■■■□□ 2.13
PCF11-203ENST00000530304 CC2D2AQ9P2K1 1620 aa28.32■■■□□ 2.12
PCF11-203ENST00000530304 FANCD2Q9BXW9 1451 aa28.31■■■□□ 2.12
PCF11-203ENST00000530304 FHAD1B1AJZ9 1412 aa28.29■■■□□ 2.12
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms