RNA–Protein interactions for RNA: ENST00000530660.5

PCF11-204, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 2

Gene PCF11, Length 3,309 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-204ENST00000530660 NISCHQ9Y2I1 1504 aa26■■□□□ 1.75
PCF11-204ENST00000530660 HRCP23327 699 aa24.2■■□□□ 1.46
PCF11-204ENST00000530660 PELP1Q8IZL8 1130 aaKnown RBP24.02■■□□□ 1.44
PCF11-204ENST00000530660 PPARGC1BQ86YN6 1023 aaKnown RBP23.87■■□□□ 1.41
PCF11-204ENST00000530660 PCGF6Q9BYE7 350 aa23.55■■□□□ 1.36
PCF11-204ENST00000530660 SCAF1Q9H7N4 1312 aaKnown RBP23.3■■□□□ 1.32
PCF11-204ENST00000530660 MYT1Q01538 1121 aa23.18■■□□□ 1.3
PCF11-204ENST00000530660 SHROOM4Q9ULL8 1493 aa23.13■■□□□ 1.29
PCF11-204ENST00000530660 MYO15BQ96JP2 1530 aa23.03■■□□□ 1.28
PCF11-204ENST00000530660 SUPT5HO00267 1087 aaKnown RBP23.01■■□□□ 1.27
PCF11-204ENST00000530660 CHIC1Q5VXU3 224 aa22.69■■□□□ 1.22
PCF11-204ENST00000530660 TRIM26Q12899 539 aaPredicted RBP22.49■■□□□ 1.19
PCF11-204ENST00000530660 DCAF1Q9Y4B6 1507 aa22.48■■□□□ 1.19
PCF11-204ENST00000530660 ACIN1Q9UKV3 1341 aaKnown RBP22.47■■□□□ 1.19
PCF11-204ENST00000530660 NEUROD1Q13562 356 aa22.46■■□□□ 1.19
PCF11-204ENST00000530660 GTF3C3Q9Y5Q9 886 aa22.4■■□□□ 1.18
PCF11-204ENST00000530660 ZEB1P37275 1124 aaPredicted RBP22.39■■□□□ 1.17
PCF11-204ENST00000530660 LOC105371045A0A1W2PR82 267 aa22.37■■□□□ 1.17
PCF11-204ENST00000530660 CCDC180Q9P1Z9 1646 aa22.3■■□□□ 1.16
PCF11-204ENST00000530660 ZCCHC6Q5VYS8 1495 aaKnown RBP22.11■■□□□ 1.13
PCF11-204ENST00000530660 CENPBP07199 599 aaPredicted RBP22.04■■□□□ 1.12
PCF11-204ENST00000530660 BCL11AQ9H165 835 aa21.9■■□□□ 1.1
PCF11-204ENST00000530660 TTBK1Q5TCY1 1321 aaPredicted RBP21.86■■□□□ 1.09
PCF11-204ENST00000530660 DIEXFQ68CQ4 756 aaKnown RBP21.81■■□□□ 1.08
PCF11-204ENST00000530660 DCAF8L2P0C7V8 631 aa21.8■■□□□ 1.08
PCF11-204ENST00000530660 FAM9AQ8IZU1 332 aaPredicted RBP21.77■■□□□ 1.08
PCF11-204ENST00000530660 YTHDC1Q96MU7 727 aaKnown RBP21.66■■□□□ 1.06
PCF11-204ENST00000530660 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.63■■□□□ 1.05
PCF11-204ENST00000530660 CCER1Q8TC90 406 aaPredicted RBP21.54■■□□□ 1.04
PCF11-204ENST00000530660 ANP32EQ9BTT0 268 aa21.48■■□□□ 1.03
PCF11-204ENST00000530660 PRKCSHP14314 528 aaPredicted RBP21.44■■□□□ 1.02
PCF11-204ENST00000530660 CSRNP3Q8WYN3 585 aa21.37■■□□□ 1.01
PCF11-204ENST00000530660 EHMT2Q96KQ7 1210 aa21.37■■□□□ 1.01
PCF11-204ENST00000530660 TRIM41Q8WV44 630 aa21.35■■□□□ 1.01
PCF11-204ENST00000530660 MIER1Q8N108 512 aa21.24■□□□□ 0.99
PCF11-204ENST00000530660 TSHZ2Q9NRE2 1034 aa21.21■□□□□ 0.99
PCF11-204ENST00000530660 ZNF316A6NFI3 1004 aaPredicted RBP21.19■□□□□ 0.98
PCF11-204ENST00000530660 SUPT16HQ9Y5B9 1047 aaKnown RBP21.13■□□□□ 0.97
PCF11-204ENST00000530660 ABCC9O60706 1549 aa21■□□□□ 0.95
PCF11-204ENST00000530660 RSF1Q96T23 1441 aaPredicted RBP20.95■□□□□ 0.94
PCF11-204ENST00000530660 RB1CC1Q8TDY2 1594 aa20.88■□□□□ 0.93
PCF11-204ENST00000530660 CLSPNQ9HAW4 1339 aa20.81■□□□□ 0.92
PCF11-204ENST00000530660 ERICH6Q7L0X2 663 aa20.75■□□□□ 0.91
PCF11-204ENST00000530660 BCANQ96GW7 911 aa20.73■□□□□ 0.91
PCF11-204ENST00000530660 SCRIBQ14160 1630 aa20.66■□□□□ 0.9
PCF11-204ENST00000530660 RBM19Q9Y4C8 960 aaKnown RBP20.65■□□□□ 0.9
PCF11-204ENST00000530660 MSH5O43196 834 aa20.57■□□□□ 0.88
PCF11-204ENST00000530660 ANO8Q9HCE9 1232 aaPredicted RBP20.56■□□□□ 0.88
PCF11-204ENST00000530660 APLP2Q06481 763 aa20.56■□□□□ 0.88
PCF11-204ENST00000530660 FKBP8Q14318 412 aa20.48■□□□□ 0.87
PCF11-204ENST00000530660 ITGAEP38570 1179 aa20.42■□□□□ 0.86
PCF11-204ENST00000530660 HNRNPUL2Q1KMD3 747 aaKnown RBP20.42■□□□□ 0.86
PCF11-204ENST00000530660 CECR2Q9BXF3 1484 aa20.41■□□□□ 0.86
PCF11-204ENST00000530660 WRNQ14191 1432 aaPredicted RBP eCLIP20.4■□□□□ 0.86
PCF11-204ENST00000530660 KCNH8Q96L42 1107 aa20.39■□□□□ 0.86
PCF11-204ENST00000530660 MROH2BQ7Z745 1585 aa20.36■□□□□ 0.85
PCF11-204ENST00000530660 CEP162Q5TB80 1403 aa20.35■□□□□ 0.85
PCF11-204ENST00000530660 DEKP35659 375 aaKnown RBP20.33■□□□□ 0.85
PCF11-204ENST00000530660 WIZO95785 1651 aa20.3■□□□□ 0.84
PCF11-204ENST00000530660 SALL2Q9Y467 1007 aaPredicted RBP20.29■□□□□ 0.84
PCF11-204ENST00000530660 CCDC136Q96JN2 1154 aa20.24■□□□□ 0.83
PCF11-204ENST00000530660 CCDC88BA6NC98 1476 aa20.22■□□□□ 0.83
PCF11-204ENST00000530660 EIF4G1Q04637 1599 aaKnown RBP20.21■□□□□ 0.83
PCF11-204ENST00000530660 ABCC8Q09428 1581 aa20.19■□□□□ 0.82
PCF11-204ENST00000530660 NEFLP07196 543 aa20.19■□□□□ 0.82
PCF11-204ENST00000530660 TNIKQ9UKE5 1360 aa20.18■□□□□ 0.82
PCF11-204ENST00000530660 FANCIQ9NVI1 1328 aa20.17■□□□□ 0.82
PCF11-204ENST00000530660 UBTFP17480 764 aaKnown RBP20.17■□□□□ 0.82
PCF11-204ENST00000530660 SOGA1O94964 1423 aa20.16■□□□□ 0.82
PCF11-204ENST00000530660 MYT1LQ9UL68 1186 aa20.1■□□□□ 0.81
PCF11-204ENST00000530660 BAZ1AQ9NRL2 1556 aaPredicted RBP20.08■□□□□ 0.81
PCF11-204ENST00000530660 RUSC2Q8N2Y8 1516 aa20.06■□□□□ 0.8
PCF11-204ENST00000530660 NBR1Q14596 966 aa20.03■□□□□ 0.8
PCF11-204ENST00000530660 TRIM52Q96A61 297 aa20.02■□□□□ 0.79
PCF11-204ENST00000530660 ZBTB4Q9P1Z0 1013 aaPredicted RBP20.02■□□□□ 0.79
PCF11-204ENST00000530660 RTN4Q9NQC3 1192 aaKnown RBP19.98■□□□□ 0.79
PCF11-204ENST00000530660 CDK11AQ9UQ88 783 aaPredicted RBP19.98■□□□□ 0.79
PCF11-204ENST00000530660 UBE2Q2Q8WVN8 375 aa19.97■□□□□ 0.79
PCF11-204ENST00000530660 IL27Q8NEV9 243 aa19.96■□□□□ 0.79
PCF11-204ENST00000530660 ERICH6BQ5W0A0 696 aa19.95■□□□□ 0.78
PCF11-204ENST00000530660 IRX6P78412 446 aaPredicted RBP19.93■□□□□ 0.78
PCF11-204ENST00000530660 GOLGA3Q08378 1498 aa19.93■□□□□ 0.78
PCF11-204ENST00000530660 NACADO15069 1562 aa19.92■□□□□ 0.78
PCF11-204ENST00000530660 DHX57Q6P158 1386 aaKnown RBP19.9■□□□□ 0.78
PCF11-204ENST00000530660 EEA1Q15075 1411 aa19.9■□□□□ 0.78
PCF11-204ENST00000530660 DDX10Q13206 875 aaKnown RBP19.87■□□□□ 0.77
PCF11-204ENST00000530660 PAK3O75914 559 aaPredicted RBP19.85■□□□□ 0.77
PCF11-204ENST00000530660 TOP2AP11388 1531 aaKnown RBP19.84■□□□□ 0.77
PCF11-204ENST00000530660 SMARCA2P51531 1590 aa19.82■□□□□ 0.76
PCF11-204ENST00000530660 CLIP1P30622 1438 aa19.81■□□□□ 0.76
PCF11-204ENST00000530660 NOP58Q9Y2X3 529 aaKnown RBP19.8■□□□□ 0.76
PCF11-204ENST00000530660 RANGAP1P46060 587 aaPredicted RBP19.79■□□□□ 0.76
PCF11-204ENST00000530660 VPS8Q8N3P4 1428 aa19.76■□□□□ 0.75
PCF11-204ENST00000530660 CEP164Q9UPV0 1460 aa19.71■□□□□ 0.75
PCF11-204ENST00000530660 RTL5Q5HYW3 569 aaPredicted RBP19.68■□□□□ 0.74
PCF11-204ENST00000530660 HIRIP3Q9BW71 556 aaPredicted RBP19.64■□□□□ 0.74
PCF11-204ENST00000530660 SMARCA4P51532 1647 aa19.64■□□□□ 0.73
PCF11-204ENST00000530660 EIF5BO60841 1220 aaKnown RBP19.64■□□□□ 0.73
PCF11-204ENST00000530660 KIF21BO75037 1637 aa19.63■□□□□ 0.73
PCF11-204ENST00000530660 PPP1R15AO75807 674 aaPredicted RBP19.61■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms