RNA–Protein interactions for RNA: ENST00000345080.4

LIN28B-201, Transcript of lin-28 homolog B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIN28B, Length 5,505 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIN28B-201ENST00000345080 MYT1Q01538 1121 aa13.3□□□□□ -0.28
LIN28B-201ENST00000345080 PELP1Q8IZL8 1130 aaKnown RBP13.23□□□□□ -0.29
LIN28B-201ENST00000345080 DCAF8L2P0C7V8 631 aa13□□□□□ -0.33
LIN28B-201ENST00000345080 NISCHQ9Y2I1 1504 aa12.94□□□□□ -0.34
LIN28B-201ENST00000345080 FAM9AQ8IZU1 332 aaPredicted RBP12.5□□□□□ -0.41
LIN28B-201ENST00000345080 TTBK1Q5TCY1 1321 aaPredicted RBP12.42□□□□□ -0.42
LIN28B-201ENST00000345080 ERICH6Q7L0X2 663 aa12.29□□□□□ -0.44
LIN28B-201ENST00000345080 ZEB1P37275 1124 aaPredicted RBP12.05□□□□□ -0.48
LIN28B-201ENST00000345080 CENPBP07199 599 aaPredicted RBP12.03□□□□□ -0.48
LIN28B-201ENST00000345080 CCER1Q8TC90 406 aaPredicted RBP11.91□□□□□ -0.5
LIN28B-201ENST00000345080 HRCP23327 699 aa11.9□□□□□ -0.5
LIN28B-201ENST00000345080 SUPT5HO00267 1087 aaKnown RBP11.76□□□□□ -0.53
LIN28B-201ENST00000345080 PCGF6Q9BYE7 350 aa11.62□□□□□ -0.55
LIN28B-201ENST00000345080 YTHDC1Q96MU7 727 aaKnown RBP11.59□□□□□ -0.55
LIN28B-201ENST00000345080 SHROOM4Q9ULL8 1493 aa11.56□□□□□ -0.56
LIN28B-201ENST00000345080 RANGAP1P46060 587 aaPredicted RBP11.52□□□□□ -0.57
LIN28B-201ENST00000345080 EIF5BO60841 1220 aaKnown RBP11.48□□□□□ -0.57
LIN28B-201ENST00000345080 APLP2Q06481 763 aa11.46□□□□□ -0.57
LIN28B-201ENST00000345080 NEFLP07196 543 aa11.45□□□□□ -0.58
LIN28B-201ENST00000345080 EHMT2Q96KQ7 1210 aa11.38□□□□□ -0.59
LIN28B-201ENST00000345080 RTL5Q5HYW3 569 aaPredicted RBP11.37□□□□□ -0.59
LIN28B-201ENST00000345080 TRIM26Q12899 539 aaPredicted RBP11.36□□□□□ -0.59
LIN28B-201ENST00000345080 MYT1LQ9UL68 1186 aa11.35□□□□□ -0.59
LIN28B-201ENST00000345080 ABCC9O60706 1549 aa11.35□□□□□ -0.59
LIN28B-201ENST00000345080 CLSPNQ9HAW4 1339 aa11.35□□□□□ -0.59
LIN28B-201ENST00000345080 DAXXQ9UER7 740 aaPredicted RBP11.32□□□□□ -0.6
LIN28B-201ENST00000345080 ACIN1Q9UKV3 1341 aaKnown RBP11.27□□□□□ -0.61
LIN28B-201ENST00000345080 GLIPR1L2Q4G1C9 344 aa11.24□□□□□ -0.61
LIN28B-201ENST00000345080 GTF3C3Q9Y5Q9 886 aa11.2□□□□□ -0.62
LIN28B-201ENST00000345080 PPARGC1BQ86YN6 1023 aaKnown RBP11.14□□□□□ -0.63
LIN28B-201ENST00000345080 CHIC1Q5VXU3 224 aa11.13□□□□□ -0.63
LIN28B-201ENST00000345080 TRIM41Q8WV44 630 aa11.12□□□□□ -0.63
LIN28B-201ENST00000345080 ATP1B4Q9UN42 357 aaPredicted RBP11.12□□□□□ -0.63
LIN28B-201ENST00000345080 SCAF1Q9H7N4 1312 aaKnown RBP11.1□□□□□ -0.63
LIN28B-201ENST00000345080 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.08□□□□□ -0.64
LIN28B-201ENST00000345080 HNRNPUL2Q1KMD3 747 aaKnown RBP11.08□□□□□ -0.64
LIN28B-201ENST00000345080 NPM1P06748 294 aaKnown RBP eCLIP11.08□□□□□ -0.64
LIN28B-201ENST00000345080 BCL11AQ9H165 835 aa11.06□□□□□ -0.64
LIN28B-201ENST00000345080 DIEXFQ68CQ4 756 aaKnown RBP11.06□□□□□ -0.64
LIN28B-201ENST00000345080 ZNF316A6NFI3 1004 aaPredicted RBP11.04□□□□□ -0.64
LIN28B-201ENST00000345080 ANP32EQ9BTT0 268 aa11.03□□□□□ -0.64
LIN28B-201ENST00000345080 PABPN1Q86U42 306 aaKnown RBP eCLIP11.03□□□□□ -0.64
LIN28B-201ENST00000345080 DCAF1Q9Y4B6 1507 aa11.03□□□□□ -0.64
LIN28B-201ENST00000345080 ESF1Q9H501 851 aaKnown RBP11.01□□□□□ -0.65
LIN28B-201ENST00000345080 AEBP2Q6ZN18 517 aaPredicted RBP10.96□□□□□ -0.65
LIN28B-201ENST00000345080 FBLN2P98095 1184 aa10.95□□□□□ -0.66
LIN28B-201ENST00000345080 BCANQ96GW7 911 aa10.94□□□□□ -0.66
LIN28B-201ENST00000345080 CCDC180Q9P1Z9 1646 aa10.91□□□□□ -0.66
LIN28B-201ENST00000345080 ZCCHC6Q5VYS8 1495 aaKnown RBP10.9□□□□□ -0.66
LIN28B-201ENST00000345080 AMER1Q5JTC6 1135 aaPredicted RBP10.85□□□□□ -0.67
LIN28B-201ENST00000345080 RB1CC1Q8TDY2 1594 aa10.85□□□□□ -0.67
LIN28B-201ENST00000345080 CDK11AQ9UQ88 783 aaPredicted RBP10.83□□□□□ -0.68
LIN28B-201ENST00000345080 NEUROD1Q13562 356 aa10.82□□□□□ -0.68
LIN28B-201ENST00000345080 ERCC6Q03468 1493 aa10.81□□□□□ -0.68
LIN28B-201ENST00000345080 SLC24A1O60721 1099 aa10.77□□□□□ -0.69
LIN28B-201ENST00000345080 TRHP20396 242 aaPredicted RBP10.76□□□□□ -0.69
LIN28B-201ENST00000345080 UBTFP17480 764 aaKnown RBP10.75□□□□□ -0.69
LIN28B-201ENST00000345080 LOC105371045A0A1W2PR82 267 aa10.74□□□□□ -0.69
LIN28B-201ENST00000345080 ERICH6BQ5W0A0 696 aa10.73□□□□□ -0.69
LIN28B-201ENST00000345080 NBR1Q14596 966 aa10.73□□□□□ -0.69
LIN28B-201ENST00000345080 RTN4Q9NQC3 1192 aaKnown RBP10.72□□□□□ -0.69
LIN28B-201ENST00000345080 POLR3GLQ9BT43 218 aa10.71□□□□□ -0.69
LIN28B-201ENST00000345080 CDK11BP21127 795 aaKnown RBP10.69□□□□□ -0.7
LIN28B-201ENST00000345080 PRKCSHP14314 528 aaPredicted RBP10.68□□□□□ -0.7
LIN28B-201ENST00000345080 CNGB1Q14028 1251 aaPredicted RBP10.67□□□□□ -0.7
LIN28B-201ENST00000345080 ANP32AP39687 249 aaKnown RBP10.66□□□□□ -0.7
LIN28B-201ENST00000345080 ARXQ96QS3 562 aa10.65□□□□□ -0.7
LIN28B-201ENST00000345080 TNNT2P45379 298 aaPredicted RBP10.64□□□□□ -0.71
LIN28B-201ENST00000345080 NPM2Q86SE8 214 aaKnown RBP10.62□□□□□ -0.71
LIN28B-201ENST00000345080 FOXD1Q16676 465 aa10.61□□□□□ -0.71
LIN28B-201ENST00000345080 STAG3Q9UJ98 1225 aa10.57□□□□□ -0.72
LIN28B-201ENST00000345080 CHMP7Q8WUX9 453 aaPredicted RBP10.56□□□□□ -0.72
LIN28B-201ENST00000345080 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.56□□□□□ -0.72
LIN28B-201ENST00000345080 ANP32BQ92688 251 aaKnown RBP10.56□□□□□ -0.72
LIN28B-201ENST00000345080 NACADO15069 1562 aa10.53□□□□□ -0.72
LIN28B-201ENST00000345080 PLPPR3Q6T4P5 718 aa10.51□□□□□ -0.73
LIN28B-201ENST00000345080 A0A0U1RQG5 324 aaPredicted RBP10.5□□□□□ -0.73
LIN28B-201ENST00000345080 ARID4BQ4LE39 1312 aaPredicted RBP10.5□□□□□ -0.73
LIN28B-201ENST00000345080 SCRIBQ14160 1630 aa10.49□□□□□ -0.73
LIN28B-201ENST00000345080 NAP1L5Q96NT1 182 aaPredicted RBP10.48□□□□□ -0.73
LIN28B-201ENST00000345080 EEA1Q15075 1411 aa10.48□□□□□ -0.73
LIN28B-201ENST00000345080 MYO15BQ96JP2 1530 aa10.48□□□□□ -0.73
LIN28B-201ENST00000345080 CSRNP3Q8WYN3 585 aa10.48□□□□□ -0.73
LIN28B-201ENST00000345080 PODXL2Q9NZ53 605 aa10.47□□□□□ -0.73
LIN28B-201ENST00000345080 NCLP19338 710 aaKnown RBP10.47□□□□□ -0.73
LIN28B-201ENST00000345080 SLC4A1APQ9BWU0 796 aaKnown RBP10.47□□□□□ -0.73
LIN28B-201ENST00000345080 DCAF8L1A6NGE4 600 aa10.46□□□□□ -0.73
LIN28B-201ENST00000345080 CCDC136Q96JN2 1154 aa10.46□□□□□ -0.73
LIN28B-201ENST00000345080 ZNF326Q5BKZ1 582 aaKnown RBP10.46□□□□□ -0.74
LIN28B-201ENST00000345080 FKBP8Q14318 412 aa10.45□□□□□ -0.74
LIN28B-201ENST00000345080 ZBTB47Q9UFB7 747 aaPredicted RBP10.45□□□□□ -0.74
LIN28B-201ENST00000345080 DEKP35659 375 aaKnown RBP10.44□□□□□ -0.74
LIN28B-201ENST00000345080 ANP32CO43423 234 aa10.43□□□□□ -0.74
LIN28B-201ENST00000345080 SUPT16HQ9Y5B9 1047 aaKnown RBP10.41□□□□□ -0.74
LIN28B-201ENST00000345080 PPM1GO15355 546 aaPredicted RBP10.4□□□□□ -0.74
LIN28B-201ENST00000345080 DDRGK1Q96HY6 314 aa10.37□□□□□ -0.75
LIN28B-201ENST00000345080 VSIG10Q8N0Z9 540 aa10.36□□□□□ -0.75
LIN28B-201ENST00000345080 TRIM44Q96DX7 344 aaPredicted RBP10.36□□□□□ -0.75
LIN28B-201ENST00000345080 RSPH6AQ9H0K4 717 aa10.36□□□□□ -0.75
LIN28B-201ENST00000345080 NOP58Q9Y2X3 529 aaKnown RBP10.35□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms