RNA–Protein interactions for RNA: ENST00000368690.7

CHTOP-203, Transcript of chromatin target of PRMT1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene CHTOP, Length 2,165 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHTOP-203ENST00000368690 NISCHQ9Y2I1 1504 aa35.91■■■■□ 3.34
CHTOP-203ENST00000368690 CCDC180Q9P1Z9 1646 aa31.29■■■□□ 2.6
CHTOP-203ENST00000368690 ZCCHC6Q5VYS8 1495 aaKnown RBP30.13■■■□□ 2.41
CHTOP-203ENST00000368690 DCAF8L2P0C7V8 631 aa30.01■■■□□ 2.39
CHTOP-203ENST00000368690 ABCC9O60706 1549 aa29.87■■■□□ 2.37
CHTOP-203ENST00000368690 DCAF1Q9Y4B6 1507 aa29.57■■■□□ 2.32
CHTOP-203ENST00000368690 SHROOM4Q9ULL8 1493 aa29.5■■■□□ 2.31
CHTOP-203ENST00000368690 MYO15BQ96JP2 1530 aa29.23■■■□□ 2.27
CHTOP-203ENST00000368690 HRCP23327 699 aa29.2■■■□□ 2.27
CHTOP-203ENST00000368690 NACADO15069 1562 aa29.18■■■□□ 2.26
CHTOP-203ENST00000368690 SUPT5HO00267 1087 aaKnown RBP29.09■■■□□ 2.25
CHTOP-203ENST00000368690 RB1CC1Q8TDY2 1594 aa29■■■□□ 2.23
CHTOP-203ENST00000368690 SCRIBQ14160 1630 aa28.94■■■□□ 2.22
CHTOP-203ENST00000368690 CHIC1Q5VXU3 224 aa28.8■■■□□ 2.2
CHTOP-203ENST00000368690 PCGF6Q9BYE7 350 aa28.52■■■□□ 2.16
CHTOP-203ENST00000368690 UNC13AQ9UPW8 1703 aa28.42■■■□□ 2.14
CHTOP-203ENST00000368690 PPARGC1BQ86YN6 1023 aaKnown RBP28.23■■■□□ 2.11
CHTOP-203ENST00000368690 PABPN1Q86U42 306 aaKnown RBP eCLIP28.21■■■□□ 2.11
CHTOP-203ENST00000368690 BICRAQ9NZM4 1560 aa28.1■■■□□ 2.09
CHTOP-203ENST00000368690 TRIM26Q12899 539 aaPredicted RBP27.99■■■□□ 2.07
CHTOP-203ENST00000368690 CECR2Q9BXF3 1484 aa27.98■■■□□ 2.07
CHTOP-203ENST00000368690 PELP1Q8IZL8 1130 aaKnown RBP27.9■■■□□ 2.06
CHTOP-203ENST00000368690 RSF1Q96T23 1441 aaPredicted RBP27.85■■■□□ 2.05
CHTOP-203ENST00000368690 LOC105371045A0A1W2PR82 267 aa27.83■■■□□ 2.05
CHTOP-203ENST00000368690 ZEB1P37275 1124 aaPredicted RBP27.82■■■□□ 2.04
CHTOP-203ENST00000368690 MROH2BQ7Z745 1585 aa27.78■■■□□ 2.04
CHTOP-203ENST00000368690 BAZ1AQ9NRL2 1556 aaPredicted RBP27.75■■■□□ 2.03
CHTOP-203ENST00000368690 SMARCA4P51532 1647 aa27.64■■■□□ 2.01
CHTOP-203ENST00000368690 WIZO95785 1651 aa27.59■■■□□ 2.01
CHTOP-203ENST00000368690 EIF4G1Q04637 1599 aaKnown RBP27.32■■□□□ 1.96
CHTOP-203ENST00000368690 SCAF1Q9H7N4 1312 aaKnown RBP27.27■■□□□ 1.96
CHTOP-203ENST00000368690 TOP2AP11388 1531 aaKnown RBP27.23■■□□□ 1.95
CHTOP-203ENST00000368690 PEG3Q9GZU2 1588 aa27.21■■□□□ 1.95
CHTOP-203ENST00000368690 ATAD2BQ9ULI0 1458 aa27.21■■□□□ 1.95
CHTOP-203ENST00000368690 SMARCA2P51531 1590 aa27.18■■□□□ 1.94
CHTOP-203ENST00000368690 TRIM41Q8WV44 630 aa27.16■■□□□ 1.94
CHTOP-203ENST00000368690 BAZ1BQ9UIG0 1483 aaKnown RBP27.11■■□□□ 1.93
CHTOP-203ENST00000368690 CCDC88BA6NC98 1476 aa26.99■■□□□ 1.91
CHTOP-203ENST00000368690 CC2D2AQ9P2K1 1620 aa26.95■■□□□ 1.91
CHTOP-203ENST00000368690 NCAPD3P42695 1498 aa26.94■■□□□ 1.9
CHTOP-203ENST00000368690 HMGXB3Q12766 1538 aa26.89■■□□□ 1.9
CHTOP-203ENST00000368690 ACIN1Q9UKV3 1341 aaKnown RBP26.85■■□□□ 1.89
CHTOP-203ENST00000368690 MYT1Q01538 1121 aa26.82■■□□□ 1.88
CHTOP-203ENST00000368690 FAM9AQ8IZU1 332 aaPredicted RBP26.79■■□□□ 1.88
CHTOP-203ENST00000368690 NEUROD1Q13562 356 aa26.64■■□□□ 1.86
CHTOP-203ENST00000368690 CENPBP07199 599 aaPredicted RBP26.63■■□□□ 1.85
CHTOP-203ENST00000368690 CCER1Q8TC90 406 aaPredicted RBP26.59■■□□□ 1.85
CHTOP-203ENST00000368690 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP26.54■■□□□ 1.84
CHTOP-203ENST00000368690 DIEXFQ68CQ4 756 aaKnown RBP26.53■■□□□ 1.84
CHTOP-203ENST00000368690 WRNQ14191 1432 aaPredicted RBP eCLIP26.52■■□□□ 1.845e-6■■□□□ 12.5
CHTOP-203ENST00000368690 ABCC8Q09428 1581 aa26.47■■□□□ 1.83
CHTOP-203ENST00000368690 GTF3C3Q9Y5Q9 886 aa26.46■■□□□ 1.83
CHTOP-203ENST00000368690 EHMT2Q96KQ7 1210 aa26.39■■□□□ 1.82
CHTOP-203ENST00000368690 DNAJC5BQ9UF47 199 aa26.39■■□□□ 1.82
CHTOP-203ENST00000368690 CFTRP13569 1480 aa26.35■■□□□ 1.81
CHTOP-203ENST00000368690 CADPSQ9ULU8 1353 aa26.3■■□□□ 1.8
CHTOP-203ENST00000368690 CEP162Q5TB80 1403 aa26.2■■□□□ 1.78
CHTOP-203ENST00000368690 ZNF316A6NFI3 1004 aaPredicted RBP26.19■■□□□ 1.78
CHTOP-203ENST00000368690 TNIKQ9UKE5 1360 aa26.18■■□□□ 1.78
CHTOP-203ENST00000368690 PRDM2Q13029 1718 aa26.18■■□□□ 1.78
CHTOP-203ENST00000368690 NESP48681 1621 aa26.18■■□□□ 1.78
CHTOP-203ENST00000368690 SYNJ1O43426 1573 aa26.14■■□□□ 1.78
CHTOP-203ENST00000368690 EEA1Q15075 1411 aa26.14■■□□□ 1.77
CHTOP-203ENST00000368690 LAMC3Q9Y6N6 1575 aa26.06■■□□□ 1.76
CHTOP-203ENST00000368690 FANCD2Q9BXW9 1451 aa26.05■■□□□ 1.76
CHTOP-203ENST00000368690 TOP2BQ02880 1626 aa26■■□□□ 1.75
CHTOP-203ENST00000368690 CUX1P39880 1505 aa25.98■■□□□ 1.75
CHTOP-203ENST00000368690 SOGA1O94964 1423 aa25.94■■□□□ 1.74
CHTOP-203ENST00000368690 BIVM-ERCC5R4GMW8 1640 aa25.94■■□□□ 1.74
CHTOP-203ENST00000368690 PDS5BQ9NTI5 1447 aa25.92■■□□□ 1.74
CHTOP-203ENST00000368690 CEP164Q9UPV0 1460 aa25.89■■□□□ 1.74
CHTOP-203ENST00000368690 GOLGA3Q08378 1498 aa25.89■■□□□ 1.73
CHTOP-203ENST00000368690 CSRNP3Q8WYN3 585 aa25.88■■□□□ 1.73
CHTOP-203ENST00000368690 RUSC2Q8N2Y8 1516 aa25.84■■□□□ 1.73
CHTOP-203ENST00000368690 KIF21AQ7Z4S6 1674 aa25.82■■□□□ 1.72
CHTOP-203ENST00000368690 MIER1Q8N108 512 aa25.81■■□□□ 1.72
CHTOP-203ENST00000368690 TTBK1Q5TCY1 1321 aaPredicted RBP25.79■■□□□ 1.72
CHTOP-203ENST00000368690 CLSPNQ9HAW4 1339 aa25.78■■□□□ 1.72
CHTOP-203ENST00000368690 DNMBPQ6XZF7 1577 aa25.75■■□□□ 1.71
CHTOP-203ENST00000368690 YTHDC1Q96MU7 727 aaKnown RBP25.75■■□□□ 1.71
CHTOP-203ENST00000368690 FGD5Q6ZNL6 1462 aa25.74■■□□□ 1.71
CHTOP-203ENST00000368690 TOPBP1Q92547 1522 aa25.73■■□□□ 1.71
CHTOP-203ENST00000368690 UBTFP17480 764 aaKnown RBP25.73■■□□□ 1.71
CHTOP-203ENST00000368690 KIF21BO75037 1637 aa25.72■■□□□ 1.71
CHTOP-203ENST00000368690 URB2Q14146 1524 aaKnown RBP25.7■■□□□ 1.7
CHTOP-203ENST00000368690 ERCC6Q03468 1493 aa25.65■■□□□ 1.7
CHTOP-203ENST00000368690 POLA1P09884 1462 aaPredicted RBP25.61■■□□□ 1.69
CHTOP-203ENST00000368690 KIF27Q86VH2 1401 aa25.61■■□□□ 1.69
CHTOP-203ENST00000368690 VPS8Q8N3P4 1428 aa25.6■■□□□ 1.69
CHTOP-203ENST00000368690 CUX2O14529 1486 aa25.59■■□□□ 1.69
CHTOP-203ENST00000368690 RAD54L2Q9Y4B4 1467 aa25.58■■□□□ 1.69
CHTOP-203ENST00000368690 MRC2Q9UBG0 1479 aa25.57■■□□□ 1.68
CHTOP-203ENST00000368690 CLIP1P30622 1438 aa25.56■■□□□ 1.68
CHTOP-203ENST00000368690 HNRNPUL2Q1KMD3 747 aaKnown RBP25.54■■□□□ 1.68
CHTOP-203ENST00000368690 ABCA10Q8WWZ4 1543 aa25.44■■□□□ 1.66
CHTOP-203ENST00000368690 WDR62O43379 1518 aa25.41■■□□□ 1.66
CHTOP-203ENST00000368690 RAPGEF2Q9Y4G8 1499 aa25.4■■□□□ 1.66
CHTOP-203ENST00000368690 APLP2Q06481 763 aa25.39■■□□□ 1.65
CHTOP-203ENST00000368690 SUPT16HQ9Y5B9 1047 aaKnown RBP25.38■■□□□ 1.65
CHTOP-203ENST00000368690 TDRD9Q8NDG6 1382 aaKnown RBP25.37■■□□□ 1.65
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms