RNA–Protein interactions for RNA: ENST00000588972.1

ATG4D-210, Transcript of autophagy related 4D cysteine peptidase, humanhuman

TSL 5

Gene ATG4D, Length 632 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4D-210ENST00000588972 CHIC1Q5VXU3 224 aa27■■□□□ 1.91
ATG4D-210ENST00000588972 AEBP2Q6ZN18 517 aaPredicted RBP26.75■■□□□ 1.87
ATG4D-210ENST00000588972 PHF23Q9BUL5 403 aaPredicted RBP23.89■■□□□ 1.41
ATG4D-210ENST00000588972 SENP3Q9H4L4 574 aaPredicted RBP22.47■■□□□ 1.19
ATG4D-210ENST00000588972 PLPPR3Q6T4P5 718 aa22.32■■□□□ 1.16
ATG4D-210ENST00000588972 ADRA2BP18089 450 aa20.94■□□□□ 0.94
ATG4D-210ENST00000588972 FOXD1Q16676 465 aa20.79■□□□□ 0.92
ATG4D-210ENST00000588972 PPP6R1Q9UPN7 881 aa20.77■□□□□ 0.92
ATG4D-210ENST00000588972 KCNA4P22459 653 aa20.45■□□□□ 0.86
ATG4D-210ENST00000588972 EHMT2Q96KQ7 1210 aa20.16■□□□□ 0.82
ATG4D-210ENST00000588972 PPP4R3CPQ6ZMV5 832 aa19.81■□□□□ 0.76
ATG4D-210ENST00000588972 PIAS4Q8N2W9 510 aaPredicted RBP19.8■□□□□ 0.76
ATG4D-210ENST00000588972 SLC4A1APQ9BWU0 796 aaKnown RBP19.62■□□□□ 0.73
ATG4D-210ENST00000588972 NCBP3Q53F19 620 aaKnown RBP19.52■□□□□ 0.72
ATG4D-210ENST00000588972 CSRNP3Q8WYN3 585 aa19.52■□□□□ 0.72
ATG4D-210ENST00000588972 NPM3O75607 178 aaKnown RBP19.3■□□□□ 0.68
ATG4D-210ENST00000588972 CNKSR2Q8WXI2 1034 aa19.03■□□□□ 0.64
ATG4D-210ENST00000588972 SCAF1Q9H7N4 1312 aaKnown RBP18.94■□□□□ 0.62
ATG4D-210ENST00000588972 ZBTB22O15209 634 aa18.87■□□□□ 0.61
ATG4D-210ENST00000588972 MSH5O43196 834 aa18.74■□□□□ 0.59
ATG4D-210ENST00000588972 MAPK8IP2Q13387 824 aaPredicted RBP18.59■□□□□ 0.57
ATG4D-210ENST00000588972 DNAJC5BQ9UF47 199 aa18.59■□□□□ 0.57
ATG4D-210ENST00000588972 FOXD4L1Q9NU39 408 aa18.52■□□□□ 0.56
ATG4D-210ENST00000588972 RNF216Q9NWF9 866 aaPredicted RBP18.43■□□□□ 0.54
ATG4D-210ENST00000588972 NISCHQ9Y2I1 1504 aa18.38■□□□□ 0.53
ATG4D-210ENST00000588972 HOXD11P31277 338 aaPredicted RBP18.12■□□□□ 0.49
ATG4D-210ENST00000588972 DMRT2Q9Y5R5 561 aa18.12■□□□□ 0.49
ATG4D-210ENST00000588972 SLC4A2P04920 1241 aa18.01■□□□□ 0.47
ATG4D-210ENST00000588972 MYCNP04198 464 aaPredicted RBP17.77■□□□□ 0.44
ATG4D-210ENST00000588972 ATXN8OSP0DMR3 200 aa17.77■□□□□ 0.44
ATG4D-210ENST00000588972 RTN4Q9NQC3 1192 aaKnown RBP17.69■□□□□ 0.42
ATG4D-210ENST00000588972 AMER1Q5JTC6 1135 aaPredicted RBP17.64■□□□□ 0.41
ATG4D-210ENST00000588972 FKBP8Q14318 412 aa17.56■□□□□ 0.4
ATG4D-210ENST00000588972 SLC24A1O60721 1099 aa17.49■□□□□ 0.39
ATG4D-210ENST00000588972 ATF5Q9Y2D1 282 aaPredicted RBP17.29■□□□□ 0.36
ATG4D-210ENST00000588972 DCAF8L1A6NGE4 600 aa17.24■□□□□ 0.35
ATG4D-210ENST00000588972 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.23■□□□□ 0.35
ATG4D-210ENST00000588972 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.14■□□□□ 0.33
ATG4D-210ENST00000588972 HNRNPUL2Q1KMD3 747 aaKnown RBP17.14■□□□□ 0.33
ATG4D-210ENST00000588972 SAMD1Q6SPF0 538 aaPredicted RBP17.14■□□□□ 0.33
ATG4D-210ENST00000588972 U3KPZ7 1027 aaPredicted RBP17.12■□□□□ 0.33
ATG4D-210ENST00000588972 ZNF219Q9P2Y4 722 aaPredicted RBP16.86■□□□□ 0.29
ATG4D-210ENST00000588972 ABCC9O60706 1549 aa16.81■□□□□ 0.28
ATG4D-210ENST00000588972 APLP2Q06481 763 aa16.72■□□□□ 0.27
ATG4D-210ENST00000588972 CCDC180Q9P1Z9 1646 aa16.67■□□□□ 0.26
ATG4D-210ENST00000588972 SPDYE4A6NLX3 237 aa16.63■□□□□ 0.25
ATG4D-210ENST00000588972 FBXO3Q9UK99 471 aa16.63■□□□□ 0.25
ATG4D-210ENST00000588972 MKRN4PQ13434 485 aaPredicted RBP16.59■□□□□ 0.25
ATG4D-210ENST00000588972 PROM2Q8N271 834 aa16.52■□□□□ 0.24
ATG4D-210ENST00000588972 FBLN2P98095 1184 aa16.42■□□□□ 0.22
ATG4D-210ENST00000588972 VASPP50552 380 aaPredicted RBP16.41■□□□□ 0.22
ATG4D-210ENST00000588972 TRHP20396 242 aaPredicted RBP16.36■□□□□ 0.21
ATG4D-210ENST00000588972 SPINK5Q9NQ38 1064 aaPredicted RBP16.36■□□□□ 0.21
ATG4D-210ENST00000588972 POLA2Q14181 598 aa16.32■□□□□ 0.2
ATG4D-210ENST00000588972 PLCB2Q00722 1185 aa16.28■□□□□ 0.2
ATG4D-210ENST00000588972 IFNLR1Q8IU57 520 aaPredicted RBP16.28■□□□□ 0.2
ATG4D-210ENST00000588972 CAPN15O75808 1086 aa16.2■□□□□ 0.18
ATG4D-210ENST00000588972 RNF39Q9H2S5 420 aa16.19■□□□□ 0.18
ATG4D-210ENST00000588972 PKD2Q13563 968 aa16.12■□□□□ 0.17
ATG4D-210ENST00000588972 DCAF8L2P0C7V8 631 aa16.1■□□□□ 0.17
ATG4D-210ENST00000588972 ZBTB12Q9Y330 459 aaPredicted RBP16.07■□□□□ 0.16
ATG4D-210ENST00000588972 HAP1P54257 671 aaPredicted RBP16.03■□□□□ 0.16
ATG4D-210ENST00000588972 C1QBPQ07021 282 aaKnown RBP16.02■□□□□ 0.16
ATG4D-210ENST00000588972 ABCB7O75027 752 aa16.01■□□□□ 0.15
ATG4D-210ENST00000588972 RB1CC1Q8TDY2 1594 aa15.95■□□□□ 0.14
ATG4D-210ENST00000588972 SPOCK2Q92563 424 aa15.9■□□□□ 0.14
ATG4D-210ENST00000588972 KLHL34Q8N239 644 aa15.88■□□□□ 0.13
ATG4D-210ENST00000588972 ZNF692Q9BU19 519 aaPredicted RBP15.84■□□□□ 0.13
ATG4D-210ENST00000588972 STAG3Q9UJ98 1225 aa15.83■□□□□ 0.12
ATG4D-210ENST00000588972 VSIG10Q8N0Z9 540 aa15.82■□□□□ 0.12
ATG4D-210ENST00000588972 ECM2O94769 699 aaPredicted RBP15.8■□□□□ 0.12
ATG4D-210ENST00000588972 NACADO15069 1562 aa15.78■□□□□ 0.12
ATG4D-210ENST00000588972 BBXQ8WY36 941 aaPredicted RBP15.77■□□□□ 0.12
ATG4D-210ENST00000588972 BCANQ96GW7 911 aa15.77■□□□□ 0.12
ATG4D-210ENST00000588972 SSUH2Q9Y2M2 353 aa15.76■□□□□ 0.11
ATG4D-210ENST00000588972 SPDYE2BA6NHP3 402 aa15.74■□□□□ 0.11
ATG4D-210ENST00000588972 SPDYE6P0CI01 402 aa15.74■□□□□ 0.11
ATG4D-210ENST00000588972 DSG3P32926 999 aa15.74■□□□□ 0.11
ATG4D-210ENST00000588972 SPDYE2Q495Y8 402 aa15.74■□□□□ 0.11
ATG4D-210ENST00000588972 OSCARQ8IYS5 282 aa15.74■□□□□ 0.11
ATG4D-210ENST00000588972 NPM1P06748 294 aaKnown RBP eCLIP15.73■□□□□ 0.11
ATG4D-210ENST00000588972 ZBTB4Q9P1Z0 1013 aaPredicted RBP15.73■□□□□ 0.11
ATG4D-210ENST00000588972 PLCD3Q8N3E9 789 aa15.72■□□□□ 0.11
ATG4D-210ENST00000588972 PABPN1Q86U42 306 aaKnown RBP eCLIP15.67■□□□□ 0.1
ATG4D-210ENST00000588972 RGL2O15211 777 aa15.66■□□□□ 0.1
ATG4D-210ENST00000588972 PAXIP1Q6ZW49 1069 aaPredicted RBP15.64■□□□□ 0.09
ATG4D-210ENST00000588972 MIER1Q8N108 512 aa15.64■□□□□ 0.09
ATG4D-210ENST00000588972 KDM2AQ9Y2K7 1162 aa15.62■□□□□ 0.09
ATG4D-210ENST00000588972 CFAP44Q96MT7 982 aa15.6■□□□□ 0.09
ATG4D-210ENST00000588972 UNC13AQ9UPW8 1703 aa15.58■□□□□ 0.08
ATG4D-210ENST00000588972 PRKCSHP14314 528 aaPredicted RBP15.57■□□□□ 0.08
ATG4D-210ENST00000588972 TAOK2Q9UL54 1235 aa15.56■□□□□ 0.08
ATG4D-210ENST00000588972 MYO15BQ96JP2 1530 aa15.49■□□□□ 0.07
ATG4D-210ENST00000588972 SPRYD3Q8NCJ5 442 aa15.49■□□□□ 0.07
ATG4D-210ENST00000588972 CIZ1Q9ULV3 898 aaPredicted RBP15.48■□□□□ 0.07
ATG4D-210ENST00000588972 BICRAQ9NZM4 1560 aa15.48■□□□□ 0.07
ATG4D-210ENST00000588972 ZBTB47Q9UFB7 747 aaPredicted RBP15.46■□□□□ 0.07
ATG4D-210ENST00000588972 POTEDQ86YR6 584 aa15.45■□□□□ 0.06
ATG4D-210ENST00000588972 PLEKHG5O94827 1062 aa15.44■□□□□ 0.06
ATG4D-210ENST00000588972 CHGAP10645 457 aaKnown RBP15.43■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms