RNA–Protein interactions for RNA: ENST00000486263.1

NELFCD-209, Transcript of negative elongation factor complex member C/D, humanhuman

TSL 2

Gene NELFCD, Length 708 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NELFCD-209ENST00000486263 NISCHQ9Y2I1 1504 aa32.4■■■□□ 2.78
NELFCD-209ENST00000486263 CCDC180Q9P1Z9 1646 aa28.8■■■□□ 2.2
NELFCD-209ENST00000486263 ABCC9O60706 1549 aa28.19■■■□□ 2.1
NELFCD-209ENST00000486263 RB1CC1Q8TDY2 1594 aa27.15■■□□□ 1.94
NELFCD-209ENST00000486263 NACADO15069 1562 aa27.12■■□□□ 1.93
NELFCD-209ENST00000486263 ZCCHC6Q5VYS8 1495 aaKnown RBP27.08■■□□□ 1.93
NELFCD-209ENST00000486263 DCAF8L2P0C7V8 631 aa27.06■■□□□ 1.92
NELFCD-209ENST00000486263 MYO15BQ96JP2 1530 aa26.97■■□□□ 1.91
NELFCD-209ENST00000486263 DCAF1Q9Y4B6 1507 aa26.8■■□□□ 1.88
NELFCD-209ENST00000486263 UNC13AQ9UPW8 1703 aa26.49■■□□□ 1.83
NELFCD-209ENST00000486263 PABPN1Q86U42 306 aaKnown RBP eCLIP26.32■■□□□ 1.88e-7■■□□□ 12.1
NELFCD-209ENST00000486263 BICRAQ9NZM4 1560 aa26.3■■□□□ 1.8
NELFCD-209ENST00000486263 SCRIBQ14160 1630 aa26.15■■□□□ 1.78
NELFCD-209ENST00000486263 SHROOM4Q9ULL8 1493 aa26.13■■□□□ 1.77
NELFCD-209ENST00000486263 DNAJC5BQ9UF47 199 aa26■■□□□ 1.75
NELFCD-209ENST00000486263 EIF4G1Q04637 1599 aaKnown RBP25.62■■□□□ 1.69
NELFCD-209ENST00000486263 CC2D2AQ9P2K1 1620 aa25.53■■□□□ 1.68
NELFCD-209ENST00000486263 CECR2Q9BXF3 1484 aa25.4■■□□□ 1.66
NELFCD-209ENST00000486263 BAZ1AQ9NRL2 1556 aaPredicted RBP25.1■■□□□ 1.61
NELFCD-209ENST00000486263 SMARCA4P51532 1647 aa25.07■■□□□ 1.6
NELFCD-209ENST00000486263 NCAPD3P42695 1498 aa25.02■■□□□ 1.6
NELFCD-209ENST00000486263 MROH2BQ7Z745 1585 aa24.98■■□□□ 1.59
NELFCD-209ENST00000486263 SMARCA2P51531 1590 aa24.97■■□□□ 1.59
NELFCD-209ENST00000486263 ATAD2BQ9ULI0 1458 aa24.97■■□□□ 1.59
NELFCD-209ENST00000486263 RSF1Q96T23 1441 aaPredicted RBP24.91■■□□□ 1.58
NELFCD-209ENST00000486263 PEG3Q9GZU2 1588 aa24.88■■□□□ 1.57
NELFCD-209ENST00000486263 HMGXB3Q12766 1538 aa24.87■■□□□ 1.57
NELFCD-209ENST00000486263 SUPT5HO00267 1087 aaKnown RBP24.84■■□□□ 1.57
NELFCD-209ENST00000486263 BAZ1BQ9UIG0 1483 aaKnown RBP24.75■■□□□ 1.55
NELFCD-209ENST00000486263 WIZO95785 1651 aa24.74■■□□□ 1.55
NELFCD-209ENST00000486263 TOP2AP11388 1531 aaKnown RBP24.51■■□□□ 1.51
NELFCD-209ENST00000486263 LAMC3Q9Y6N6 1575 aa24.37■■□□□ 1.49
NELFCD-209ENST00000486263 NESP48681 1621 aa24.35■■□□□ 1.49
NELFCD-209ENST00000486263 ERCC6Q03468 1493 aa24.34■■□□□ 1.49
NELFCD-209ENST00000486263 CADPSQ9ULU8 1353 aa24.27■■□□□ 1.48
NELFCD-209ENST00000486263 CCDC88BA6NC98 1476 aa24.25■■□□□ 1.47
NELFCD-209ENST00000486263 PDS5BQ9NTI5 1447 aa24.22■■□□□ 1.47
NELFCD-209ENST00000486263 CUX2O14529 1486 aa24.19■■□□□ 1.46
NELFCD-209ENST00000486263 CFTRP13569 1480 aa24.1■■□□□ 1.45
NELFCD-209ENST00000486263 KIF21AQ7Z4S6 1674 aa24.08■■□□□ 1.45
NELFCD-209ENST00000486263 THOC2Q8NI27 1593 aaKnown RBP24.05■■□□□ 1.44
NELFCD-209ENST00000486263 FANCD2Q9BXW9 1451 aa23.95■■□□□ 1.42
NELFCD-209ENST00000486263 MRC2Q9UBG0 1479 aa23.94■■□□□ 1.42
NELFCD-209ENST00000486263 CEP164Q9UPV0 1460 aa23.94■■□□□ 1.42
NELFCD-209ENST00000486263 PRDM2Q13029 1718 aa23.9■■□□□ 1.42
NELFCD-209ENST00000486263 WDR62O43379 1518 aa23.88■■□□□ 1.41
NELFCD-209ENST00000486263 URB2Q14146 1524 aaKnown RBP23.7■■□□□ 1.38
NELFCD-209ENST00000486263 ABCC8Q09428 1581 aa23.63■■□□□ 1.37
NELFCD-209ENST00000486263 DNAJC5Q9H3Z4 198 aa23.6■■□□□ 1.37
NELFCD-209ENST00000486263 TOPBP1Q92547 1522 aa23.56■■□□□ 1.36
NELFCD-209ENST00000486263 DNMBPQ6XZF7 1577 aa23.53■■□□□ 1.36
NELFCD-209ENST00000486263 WRNQ14191 1432 aaPredicted RBP eCLIP23.5■■□□□ 1.35
NELFCD-209ENST00000486263 IFT140Q96RY7 1462 aa23.48■■□□□ 1.35
NELFCD-209ENST00000486263 CHIC1Q5VXU3 224 aa23.44■■□□□ 1.34
NELFCD-209ENST00000486263 TRIM41Q8WV44 630 aa23.43■■□□□ 1.34
NELFCD-209ENST00000486263 CUX1P39880 1505 aa23.4■■□□□ 1.34
NELFCD-209ENST00000486263 SYNJ1O43426 1573 aa23.36■■□□□ 1.33
NELFCD-209ENST00000486263 POLA1P09884 1462 aaPredicted RBP23.35■■□□□ 1.33
NELFCD-209ENST00000486263 TOP2BQ02880 1626 aa23.34■■□□□ 1.33
NELFCD-209ENST00000486263 TARBP1Q13395 1621 aaKnown RBP23.32■■□□□ 1.32
NELFCD-209ENST00000486263 BIVM-ERCC5R4GMW8 1640 aa23.32■■□□□ 1.32
NELFCD-209ENST00000486263 ZNF608Q9ULD9 1512 aaPredicted RBP23.31■■□□□ 1.32
NELFCD-209ENST00000486263 SOGA1O94964 1423 aa23.26■■□□□ 1.31
NELFCD-209ENST00000486263 FGD5Q6ZNL6 1462 aa23.26■■□□□ 1.31
NELFCD-209ENST00000486263 EIF4G3O43432 1585 aaKnown RBP23.23■■□□□ 1.31
NELFCD-209ENST00000486263 RAD54L2Q9Y4B4 1467 aa23.21■■□□□ 1.31
NELFCD-209ENST00000486263 WDR97A6NE52 1622 aa23.2■■□□□ 1.3
NELFCD-209ENST00000486263 AQRO60306 1485 aaKnown RBP eCLIP23.17■■□□□ 1.32e-10■■■■■ 27.4
NELFCD-209ENST00000486263 OSCARQ8IYS5 282 aa23.17■■□□□ 1.3
NELFCD-209ENST00000486263 TDRD9Q8NDG6 1382 aaKnown RBP23.11■■□□□ 1.29
NELFCD-209ENST00000486263 ABCA10Q8WWZ4 1543 aa23.08■■□□□ 1.28
NELFCD-209ENST00000486263 GRIN2BQ13224 1484 aa23.02■■□□□ 1.28
NELFCD-209ENST00000486263 KIF27Q86VH2 1401 aa22.99■■□□□ 1.27
NELFCD-209ENST00000486263 GAPVD1Q14C86 1478 aa22.99■■□□□ 1.27
NELFCD-209ENST00000486263 MAGI1Q96QZ7 1491 aaPredicted RBP22.98■■□□□ 1.27
NELFCD-209ENST00000486263 FAM9AQ8IZU1 332 aaPredicted RBP22.96■■□□□ 1.27
NELFCD-209ENST00000486263 ABCA5Q8WWZ7 1642 aa22.96■■□□□ 1.27
NELFCD-209ENST00000486263 CHD1O14646 1710 aa22.96■■□□□ 1.27
NELFCD-209ENST00000486263 SNAPC4Q5SXM2 1469 aa22.95■■□□□ 1.26
NELFCD-209ENST00000486263 EEA1Q15075 1411 aa22.92■■□□□ 1.26
NELFCD-209ENST00000486263 PBRM1Q86U86 1689 aa22.92■■□□□ 1.26
NELFCD-209ENST00000486263 FBLN2P98095 1184 aa22.9■■□□□ 1.26
NELFCD-209ENST00000486263 RUSC2Q8N2Y8 1516 aa22.9■■□□□ 1.26
NELFCD-209ENST00000486263 SYNJ2O15056 1496 aa22.89■■□□□ 1.25
NELFCD-209ENST00000486263 CHMP7Q8WUX9 453 aaPredicted RBP22.88■■□□□ 1.25
NELFCD-209ENST00000486263 CSRNP3Q8WYN3 585 aa22.84■■□□□ 1.25
NELFCD-209ENST00000486263 IGF1RP08069 1367 aa22.8■■□□□ 1.24
NELFCD-209ENST00000486263 ERICH3Q5RHP9 1530 aa22.8■■□□□ 1.24
NELFCD-209ENST00000486263 RIMBP3CA6NJZ7 1639 aa22.75■■□□□ 1.23
NELFCD-209ENST00000486263 RIMBP3BA6NNM3 1639 aa22.75■■□□□ 1.23
NELFCD-209ENST00000486263 RIMBP3Q9UFD9 1639 aa22.75■■□□□ 1.23
NELFCD-209ENST00000486263 ARHGEF11O15085 1522 aa22.74■■□□□ 1.23
NELFCD-209ENST00000486263 CLASP1Q7Z460 1538 aa22.74■■□□□ 1.23
NELFCD-209ENST00000486263 ADAMTS12P58397 1594 aa22.74■■□□□ 1.23
NELFCD-209ENST00000486263 FHAD1B1AJZ9 1412 aa22.74■■□□□ 1.23
NELFCD-209ENST00000486263 CARMIL1Q5VZK9 1371 aa22.72■■□□□ 1.23
NELFCD-209ENST00000486263 GRIN2AQ12879 1464 aa22.7■■□□□ 1.22
NELFCD-209ENST00000486263 CUL7Q14999 1698 aa22.69■■□□□ 1.22
NELFCD-209ENST00000486263 EHMT2Q96KQ7 1210 aa22.65■■□□□ 1.22
NELFCD-209ENST00000486263 NUP160Q12769 1436 aa22.64■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 9.5 ms