RNA–Protein interactions for RNA: ENST00000546814.1

LETMD1-204, Transcript of LETM1 domain containing 1, humanhuman

TSL 2

Gene LETMD1, Length 894 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LETMD1-204ENST00000546814 AEBP2Q6ZN18 517 aaPredicted RBP18.33■□□□□ 0.52
LETMD1-204ENST00000546814 CHIC1Q5VXU3 224 aa17.61■□□□□ 0.41
LETMD1-204ENST00000546814 NISCHQ9Y2I1 1504 aa17.39■□□□□ 0.37
LETMD1-204ENST00000546814 ABCC9O60706 1549 aa15.78■□□□□ 0.12
LETMD1-204ENST00000546814 CCDC180Q9P1Z9 1646 aa15.72■□□□□ 0.11
LETMD1-204ENST00000546814 SENP3Q9H4L4 574 aaPredicted RBP15.55■□□□□ 0.08
LETMD1-204ENST00000546814 PHF23Q9BUL5 403 aaPredicted RBP15.48■□□□□ 0.07
LETMD1-204ENST00000546814 DNAJC5BQ9UF47 199 aa15.06■□□□□ 0
LETMD1-204ENST00000546814 RB1CC1Q8TDY2 1594 aa15.02■□□□□ -0
LETMD1-204ENST00000546814 NACADO15069 1562 aa14.94□□□□□ -0.02
LETMD1-204ENST00000546814 MYO15BQ96JP2 1530 aa14.79□□□□□ -0.04
LETMD1-204ENST00000546814 PABPN1Q86U42 306 aaKnown RBP eCLIP14.63□□□□□ -0.07
LETMD1-204ENST00000546814 BICRAQ9NZM4 1560 aa14.62□□□□□ -0.07
LETMD1-204ENST00000546814 UNC13AQ9UPW8 1703 aa14.61□□□□□ -0.07
LETMD1-204ENST00000546814 SHROOM4Q9ULL8 1493 aa14.55□□□□□ -0.08
LETMD1-204ENST00000546814 DCAF8L2P0C7V8 631 aa14.52□□□□□ -0.09
LETMD1-204ENST00000546814 FOXD1Q16676 465 aa14.5□□□□□ -0.09
LETMD1-204ENST00000546814 DCAF1Q9Y4B6 1507 aa14.48□□□□□ -0.09
LETMD1-204ENST00000546814 ZCCHC6Q5VYS8 1495 aaKnown RBP14.38□□□□□ -0.11
LETMD1-204ENST00000546814 CECR2Q9BXF3 1484 aa14.31□□□□□ -0.12
LETMD1-204ENST00000546814 CC2D2AQ9P2K1 1620 aa14.3□□□□□ -0.12
LETMD1-204ENST00000546814 EIF4G1Q04637 1599 aaKnown RBP14.26□□□□□ -0.13
LETMD1-204ENST00000546814 PLPPR3Q6T4P5 718 aa14.14□□□□□ -0.15
LETMD1-204ENST00000546814 SCRIBQ14160 1630 aa14.14□□□□□ -0.15
LETMD1-204ENST00000546814 DNAJC5Q9H3Z4 198 aa14.06□□□□□ -0.16
LETMD1-204ENST00000546814 CUX2O14529 1486 aa13.84□□□□□ -0.19
LETMD1-204ENST00000546814 NCAPD3P42695 1498 aa13.82□□□□□ -0.2
LETMD1-204ENST00000546814 PPP6R1Q9UPN7 881 aa13.73□□□□□ -0.21
LETMD1-204ENST00000546814 ATAD2BQ9ULI0 1458 aa13.68□□□□□ -0.22
LETMD1-204ENST00000546814 HMGXB3Q12766 1538 aa13.67□□□□□ -0.22
LETMD1-204ENST00000546814 ADRA2BP18089 450 aa13.65□□□□□ -0.22
LETMD1-204ENST00000546814 ERCC6Q03468 1493 aa13.64□□□□□ -0.23
LETMD1-204ENST00000546814 SMARCA2P51531 1590 aa13.63□□□□□ -0.23
LETMD1-204ENST00000546814 PEG3Q9GZU2 1588 aa13.58□□□□□ -0.24
LETMD1-204ENST00000546814 SMARCA4P51532 1647 aa13.57□□□□□ -0.24
LETMD1-204ENST00000546814 PIAS4Q8N2W9 510 aaPredicted RBP13.52□□□□□ -0.25
LETMD1-204ENST00000546814 BAZ1AQ9NRL2 1556 aaPredicted RBP13.51□□□□□ -0.25
LETMD1-204ENST00000546814 NESP48681 1621 aa13.5□□□□□ -0.25
LETMD1-204ENST00000546814 LAMC3Q9Y6N6 1575 aa13.49□□□□□ -0.25
LETMD1-204ENST00000546814 BAZ1BQ9UIG0 1483 aaKnown RBP13.48□□□□□ -0.25
LETMD1-204ENST00000546814 THOC2Q8NI27 1593 aaKnown RBP13.48□□□□□ -0.25
LETMD1-204ENST00000546814 MSH5O43196 834 aa13.46□□□□□ -0.25
LETMD1-204ENST00000546814 PDS5BQ9NTI5 1447 aa13.41□□□□□ -0.26
LETMD1-204ENST00000546814 MROH2BQ7Z745 1585 aa13.34□□□□□ -0.27
LETMD1-204ENST00000546814 CADPSQ9ULU8 1353 aa13.33□□□□□ -0.27
LETMD1-204ENST00000546814 KIF21AQ7Z4S6 1674 aa13.31□□□□□ -0.28
LETMD1-204ENST00000546814 WDR62O43379 1518 aa13.29□□□□□ -0.28
LETMD1-204ENST00000546814 MRC2Q9UBG0 1479 aa13.28□□□□□ -0.28
LETMD1-204ENST00000546814 CFTRP13569 1480 aa13.16□□□□□ -0.3
LETMD1-204ENST00000546814 CEP164Q9UPV0 1460 aa13.16□□□□□ -0.3
LETMD1-204ENST00000546814 FANCD2Q9BXW9 1451 aa13.13□□□□□ -0.31
LETMD1-204ENST00000546814 TRIM41Q8WV44 630 aa13.13□□□□□ -0.31
LETMD1-204ENST00000546814 OSCARQ8IYS5 282 aa13.11□□□□□ -0.31
LETMD1-204ENST00000546814 WIZO95785 1651 aa13.11□□□□□ -0.31
LETMD1-204ENST00000546814 URB2Q14146 1524 aaKnown RBP13.04□□□□□ -0.32
LETMD1-204ENST00000546814 RSF1Q96T23 1441 aaPredicted RBP13.04□□□□□ -0.32
LETMD1-204ENST00000546814 TOP2AP11388 1531 aaKnown RBP13.02□□□□□ -0.33
LETMD1-204ENST00000546814 IFT140Q96RY7 1462 aa12.95□□□□□ -0.34
LETMD1-204ENST00000546814 PRDM2Q13029 1718 aa12.91□□□□□ -0.34
LETMD1-204ENST00000546814 RIMBP3CA6NJZ7 1639 aa12.91□□□□□ -0.34
LETMD1-204ENST00000546814 RIMBP3BA6NNM3 1639 aa12.91□□□□□ -0.34
LETMD1-204ENST00000546814 RIMBP3Q9UFD9 1639 aa12.91□□□□□ -0.34
LETMD1-204ENST00000546814 ABCC8Q09428 1581 aa12.9□□□□□ -0.34
LETMD1-204ENST00000546814 ARHGEF11O15085 1522 aa12.88□□□□□ -0.35
LETMD1-204ENST00000546814 ZNF608Q9ULD9 1512 aaPredicted RBP12.88□□□□□ -0.35
LETMD1-204ENST00000546814 TOPBP1Q92547 1522 aa12.87□□□□□ -0.35
LETMD1-204ENST00000546814 CCDC88BA6NC98 1476 aa12.85□□□□□ -0.35
LETMD1-204ENST00000546814 DNMBPQ6XZF7 1577 aa12.81□□□□□ -0.36
LETMD1-204ENST00000546814 EIF4G3O43432 1585 aaKnown RBP12.8□□□□□ -0.36
LETMD1-204ENST00000546814 TARBP1Q13395 1621 aaKnown RBP12.8□□□□□ -0.36
LETMD1-204ENST00000546814 POTEDQ86YR6 584 aa12.76□□□□□ -0.37
LETMD1-204ENST00000546814 ARAP1Q96P48 1450 aa12.74□□□□□ -0.37
LETMD1-204ENST00000546814 WDR97A6NE52 1622 aa12.73□□□□□ -0.37
LETMD1-204ENST00000546814 AQRO60306 1485 aaKnown RBP eCLIP12.73□□□□□ -0.371e-6■■□□□ 13.5
LETMD1-204ENST00000546814 CYB5RLQ6IPT4 315 aa12.73□□□□□ -0.37
LETMD1-204ENST00000546814 POLA1P09884 1462 aaPredicted RBP12.72□□□□□ -0.37
LETMD1-204ENST00000546814 CHD1O14646 1710 aa12.68□□□□□ -0.38
LETMD1-204ENST00000546814 CLASP1Q7Z460 1538 aa12.67□□□□□ -0.38
LETMD1-204ENST00000546814 SOGA1O94964 1423 aa12.64□□□□□ -0.39
LETMD1-204ENST00000546814 MAGI1Q96QZ7 1491 aaPredicted RBP12.64□□□□□ -0.39
LETMD1-204ENST00000546814 RAD54L2Q9Y4B4 1467 aa12.62□□□□□ -0.39
LETMD1-204ENST00000546814 TDRD9Q8NDG6 1382 aaKnown RBP12.61□□□□□ -0.39
LETMD1-204ENST00000546814 SNAPC4Q5SXM2 1469 aa12.59□□□□□ -0.39
LETMD1-204ENST00000546814 TRHP20396 242 aaPredicted RBP12.59□□□□□ -0.39
LETMD1-204ENST00000546814 SYNJ1O43426 1573 aa12.59□□□□□ -0.39
LETMD1-204ENST00000546814 SYNJ2O15056 1496 aa12.59□□□□□ -0.39
LETMD1-204ENST00000546814 GRIN2BQ13224 1484 aa12.59□□□□□ -0.39
LETMD1-204ENST00000546814 FBLN2P98095 1184 aa12.58□□□□□ -0.4
LETMD1-204ENST00000546814 FGD5Q6ZNL6 1462 aa12.58□□□□□ -0.4
LETMD1-204ENST00000546814 CHMP7Q8WUX9 453 aaPredicted RBP12.55□□□□□ -0.4
LETMD1-204ENST00000546814 CUX1P39880 1505 aa12.55□□□□□ -0.4
LETMD1-204ENST00000546814 GAPVD1Q14C86 1478 aa12.5□□□□□ -0.41
LETMD1-204ENST00000546814 ABCA10Q8WWZ4 1543 aa12.5□□□□□ -0.41
LETMD1-204ENST00000546814 SCAF1Q9H7N4 1312 aaKnown RBP12.48□□□□□ -0.41
LETMD1-204ENST00000546814 MAPK8IP2Q13387 824 aaPredicted RBP12.48□□□□□ -0.41
LETMD1-204ENST00000546814 ABCA5Q8WWZ7 1642 aa12.47□□□□□ -0.41
LETMD1-204ENST00000546814 NUP160Q12769 1436 aa12.45□□□□□ -0.42
LETMD1-204ENST00000546814 PBRM1Q86U86 1689 aa12.43□□□□□ -0.42
LETMD1-204ENST00000546814 GRIN2AQ12879 1464 aa12.42□□□□□ -0.42
LETMD1-204ENST00000546814 PPP4R3CPQ6ZMV5 832 aa12.42□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 182.7 ms