RNA–Protein interactions for RNA: ENST00000549395.1

LETMD1-219, Transcript of LETM1 domain containing 1, humanhuman

TSL 3

Gene LETMD1, Length 475 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LETMD1-219ENST00000549395 NISCHQ9Y2I1 1504 aa19.66■□□□□ 0.74
LETMD1-219ENST00000549395 ABCC9O60706 1549 aa18.49■□□□□ 0.55
LETMD1-219ENST00000549395 CCDC180Q9P1Z9 1646 aa17.9■□□□□ 0.46
LETMD1-219ENST00000549395 DNAJC5BQ9UF47 199 aa17.86■□□□□ 0.45
LETMD1-219ENST00000549395 RB1CC1Q8TDY2 1594 aa17.32■□□□□ 0.36
LETMD1-219ENST00000549395 PABPN1Q86U42 306 aaKnown RBP eCLIP17.13■□□□□ 0.33
LETMD1-219ENST00000549395 NACADO15069 1562 aa17.04■□□□□ 0.32
LETMD1-219ENST00000549395 UNC13AQ9UPW8 1703 aa17■□□□□ 0.31
LETMD1-219ENST00000549395 DCAF8L2P0C7V8 631 aa16.9■□□□□ 0.3
LETMD1-219ENST00000549395 BICRAQ9NZM4 1560 aa16.85■□□□□ 0.29
LETMD1-219ENST00000549395 DNAJC5Q9H3Z4 198 aa16.78■□□□□ 0.28
LETMD1-219ENST00000549395 CECR2Q9BXF3 1484 aa16.69■□□□□ 0.26
LETMD1-219ENST00000549395 CC2D2AQ9P2K1 1620 aa16.67■□□□□ 0.26
LETMD1-219ENST00000549395 MYO15BQ96JP2 1530 aa16.59■□□□□ 0.25
LETMD1-219ENST00000549395 SHROOM4Q9ULL8 1493 aa16.48■□□□□ 0.23
LETMD1-219ENST00000549395 EIF4G1Q04637 1599 aaKnown RBP16.47■□□□□ 0.23
LETMD1-219ENST00000549395 SCRIBQ14160 1630 aa16.3■□□□□ 0.2
LETMD1-219ENST00000549395 DCAF1Q9Y4B6 1507 aa16.17■□□□□ 0.18
LETMD1-219ENST00000549395 ZCCHC6Q5VYS8 1495 aaKnown RBP16.16■□□□□ 0.18
LETMD1-219ENST00000549395 CUX2O14529 1486 aa16.12■□□□□ 0.17
LETMD1-219ENST00000549395 ERCC6Q03468 1493 aa15.98■□□□□ 0.15
LETMD1-219ENST00000549395 TRIM41Q8WV44 630 aa15.85■□□□□ 0.13
LETMD1-219ENST00000549395 NCAPD3P42695 1498 aa15.73■□□□□ 0.11
LETMD1-219ENST00000549395 NESP48681 1621 aa15.72■□□□□ 0.11
LETMD1-219ENST00000549395 THOC2Q8NI27 1593 aaKnown RBP15.66■□□□□ 0.1
LETMD1-219ENST00000549395 ATAD2BQ9ULI0 1458 aa15.62■□□□□ 0.09
LETMD1-219ENST00000549395 HMGXB3Q12766 1538 aa15.57■□□□□ 0.08
LETMD1-219ENST00000549395 SMARCA2P51531 1590 aa15.55■□□□□ 0.08
LETMD1-219ENST00000549395 KIF21AQ7Z4S6 1674 aa15.53■□□□□ 0.08
LETMD1-219ENST00000549395 LAMC3Q9Y6N6 1575 aa15.49■□□□□ 0.07
LETMD1-219ENST00000549395 SMARCA4P51532 1647 aa15.48■□□□□ 0.07
LETMD1-219ENST00000549395 BAZ1BQ9UIG0 1483 aaKnown RBP15.44■□□□□ 0.06
LETMD1-219ENST00000549395 PDS5BQ9NTI5 1447 aa15.4■□□□□ 0.06
LETMD1-219ENST00000549395 BAZ1AQ9NRL2 1556 aaPredicted RBP15.38■□□□□ 0.05
LETMD1-219ENST00000549395 MRC2Q9UBG0 1479 aa15.32■□□□□ 0.04
LETMD1-219ENST00000549395 WDR62O43379 1518 aa15.3■□□□□ 0.04
LETMD1-219ENST00000549395 OSCARQ8IYS5 282 aa15.3■□□□□ 0.04
LETMD1-219ENST00000549395 PEG3Q9GZU2 1588 aa15.3■□□□□ 0.04
LETMD1-219ENST00000549395 CADPSQ9ULU8 1353 aa15.24■□□□□ 0.03
LETMD1-219ENST00000549395 RIMBP3CA6NJZ7 1639 aa15.21■□□□□ 0.02
LETMD1-219ENST00000549395 RIMBP3BA6NNM3 1639 aa15.21■□□□□ 0.02
LETMD1-219ENST00000549395 RIMBP3Q9UFD9 1639 aa15.21■□□□□ 0.02
LETMD1-219ENST00000549395 MROH2BQ7Z745 1585 aa15.17■□□□□ 0.02
LETMD1-219ENST00000549395 CEP164Q9UPV0 1460 aa15.14■□□□□ 0.01
LETMD1-219ENST00000549395 FANCD2Q9BXW9 1451 aa15.08■□□□□ 0
LETMD1-219ENST00000549395 ARHGEF11O15085 1522 aa15.07■□□□□ 0
LETMD1-219ENST00000549395 TRHP20396 242 aaPredicted RBP15.05■□□□□ -0
LETMD1-219ENST00000549395 AEBP2Q6ZN18 517 aaPredicted RBP15.02■□□□□ -0
LETMD1-219ENST00000549395 CYB5RLQ6IPT4 315 aa15.01□□□□□ -0.01
LETMD1-219ENST00000549395 URB2Q14146 1524 aaKnown RBP15.01□□□□□ -0.01
LETMD1-219ENST00000549395 WIZO95785 1651 aa14.99□□□□□ -0.01
LETMD1-219ENST00000549395 CFTRP13569 1480 aa14.95□□□□□ -0.02
LETMD1-219ENST00000549395 ZNF608Q9ULD9 1512 aaPredicted RBP14.92□□□□□ -0.02
LETMD1-219ENST00000549395 ARAP1Q96P48 1450 aa14.89□□□□□ -0.03
LETMD1-219ENST00000549395 IFT140Q96RY7 1462 aa14.85□□□□□ -0.03
LETMD1-219ENST00000549395 CHD1O14646 1710 aa14.84□□□□□ -0.03
LETMD1-219ENST00000549395 EIF4G3O43432 1585 aaKnown RBP14.81□□□□□ -0.04
LETMD1-219ENST00000549395 PRDM2Q13029 1718 aa14.8□□□□□ -0.04
LETMD1-219ENST00000549395 RSF1Q96T23 1441 aaPredicted RBP14.75□□□□□ -0.05
LETMD1-219ENST00000549395 FBLN2P98095 1184 aa14.74□□□□□ -0.05
LETMD1-219ENST00000549395 TOPBP1Q92547 1522 aa14.73□□□□□ -0.05
LETMD1-219ENST00000549395 AQRO60306 1485 aaKnown RBP eCLIP14.71□□□□□ -0.051e-6■■□□□ 13.5
LETMD1-219ENST00000549395 TOP2AP11388 1531 aaKnown RBP14.71□□□□□ -0.06
LETMD1-219ENST00000549395 TARBP1Q13395 1621 aaKnown RBP14.66□□□□□ -0.06
LETMD1-219ENST00000549395 ABCC8Q09428 1581 aa14.63□□□□□ -0.07
LETMD1-219ENST00000549395 DNMBPQ6XZF7 1577 aa14.63□□□□□ -0.07
LETMD1-219ENST00000549395 CLASP1Q7Z460 1538 aa14.61□□□□□ -0.07
LETMD1-219ENST00000549395 CCDC88BA6NC98 1476 aa14.57□□□□□ -0.08
LETMD1-219ENST00000549395 POLA1P09884 1462 aaPredicted RBP14.55□□□□□ -0.08
LETMD1-219ENST00000549395 SYNJ1O43426 1573 aa14.55□□□□□ -0.08
LETMD1-219ENST00000549395 SNAPC4Q5SXM2 1469 aa14.54□□□□□ -0.08
LETMD1-219ENST00000549395 TDRD9Q8NDG6 1382 aaKnown RBP14.53□□□□□ -0.08
LETMD1-219ENST00000549395 RAD54L2Q9Y4B4 1467 aa14.52□□□□□ -0.08
LETMD1-219ENST00000549395 CHMP7Q8WUX9 453 aaPredicted RBP14.51□□□□□ -0.09
LETMD1-219ENST00000549395 GAPVD1Q14C86 1478 aa14.5□□□□□ -0.09
LETMD1-219ENST00000549395 SOGA1O94964 1423 aa14.47□□□□□ -0.09
LETMD1-219ENST00000549395 ILDR1Q86SU0 546 aaPredicted RBP14.45□□□□□ -0.1
LETMD1-219ENST00000549395 MAGI1Q96QZ7 1491 aaPredicted RBP14.44□□□□□ -0.1
LETMD1-219ENST00000549395 WDR97A6NE52 1622 aa14.42□□□□□ -0.1
LETMD1-219ENST00000549395 SYNJ2O15056 1496 aa14.42□□□□□ -0.1
LETMD1-219ENST00000549395 GRIN2BQ13224 1484 aa14.39□□□□□ -0.11
LETMD1-219ENST00000549395 KIF13AQ9H1H9 1805 aa14.38□□□□□ -0.11
LETMD1-219ENST00000549395 ERCC6L2Q5T890 1561 aa14.38□□□□□ -0.11
LETMD1-219ENST00000549395 FGD5Q6ZNL6 1462 aa14.38□□□□□ -0.11
LETMD1-219ENST00000549395 PBRM1Q86U86 1689 aa14.35□□□□□ -0.11
LETMD1-219ENST00000549395 KDM4FA0A1W2PPD8 638 aa14.29□□□□□ -0.12
LETMD1-219ENST00000549395 CUX1P39880 1505 aa14.28□□□□□ -0.12
LETMD1-219ENST00000549395 CEP170Q5SW79 1584 aa14.27□□□□□ -0.12
LETMD1-219ENST00000549395 GRIN2AQ12879 1464 aa14.22□□□□□ -0.13
LETMD1-219ENST00000549395 ABCA5Q8WWZ7 1642 aa14.22□□□□□ -0.13
LETMD1-219ENST00000549395 FAM69CQ0P6D2 419 aa14.21□□□□□ -0.13
LETMD1-219ENST00000549395 SHROOM2Q13796 1616 aa14.21□□□□□ -0.13
LETMD1-219ENST00000549395 NUP160Q12769 1436 aa14.18□□□□□ -0.14
LETMD1-219ENST00000549395 KDM6BO15054 1643 aa14.18□□□□□ -0.14
LETMD1-219ENST00000549395 ABCC10Q5T3U5 1492 aa14.18□□□□□ -0.14
LETMD1-219ENST00000549395 ABCA10Q8WWZ4 1543 aa14.16□□□□□ -0.14
LETMD1-219ENST00000549395 ADAMTS12P58397 1594 aa14.14□□□□□ -0.15
LETMD1-219ENST00000549395 DIP2BQ9P265 1576 aa14.14□□□□□ -0.15
LETMD1-219ENST00000549395 TSPOAP1O95153 1857 aa14.14□□□□□ -0.15
LETMD1-219ENST00000549395 PRG4Q92954 1404 aaPredicted RBP14.11□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 107.5 ms