Protein–RNA interactions for Protein: Q9H0D6

XRN2, 5'-3' exoribonuclease 2, humanhuman

Known RBP eCLIP

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRN2Q9H0D6 DIP2A-201ENST00000400274 7023 ntAPPRIS ALT2 TSL 5 BASIC14.95□□□□□ -0.021e-6■■□□□ 14.1
XRN2Q9H0D6 CRELD1-208ENST00000467713 540 ntTSL 214.85□□□□□ -0.031e-6■■□□□ 14.1
XRN2Q9H0D6 KMT2C-207ENST00000452749 479 ntTSL 514.82□□□□□ -0.043e-6■■□□□ 14.1
XRN2Q9H0D6 STRN4-223ENST00000602223 554 ntTSL 414.76□□□□□ -0.053e-6■■□□□ 14.1
XRN2Q9H0D6 FBXO42-201ENST00000375592 6202 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.055e-8■■□□□ 14.1
XRN2Q9H0D6 GGA2-202ENST00000562117 387 ntTSL 514.69□□□□□ -0.063e-6■■□□□ 14.1
XRN2Q9H0D6 DDIT3-203ENST00000547526 644 ntTSL 314.51□□□□□ -0.093e-6■■□□□ 14.1
XRN2Q9H0D6 INTS11-213ENST00000467408 639 ntTSL 214.16□□□□□ -0.143e-6■■□□□ 14.1
XRN2Q9H0D6 CRELD1-202ENST00000383811 2696 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.171e-6■■□□□ 14.1
XRN2Q9H0D6 SEMA4C-204ENST00000467747 3371 ntTSL 213.95□□□□□ -0.183e-6■■□□□ 14.1
XRN2Q9H0D6 NQO2-206ENST00000380472 689 ntTSL 513.86□□□□□ -0.193e-6■■□□□ 14.1
XRN2Q9H0D6 VPS28-214ENST00000531032 573 ntTSL 1 (best)13.84□□□□□ -0.193e-6■■□□□ 14.1
XRN2Q9H0D6 DDIT3-201ENST00000346473 906 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.233e-6■■□□□ 14.1
XRN2Q9H0D6 INTS11-245ENST00000533916 405 ntTSL 213.57□□□□□ -0.248e-10■■□□□ 14.1
XRN2Q9H0D6 OSBPL2-201ENST00000313733 4009 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.251e-6■■□□□ 14.1
XRN2Q9H0D6 SLC16A1-202ENST00000429288 865 ntTSL 313.3□□□□□ -0.289e-9■■□□□ 14.1
XRN2Q9H0D6 SLC16A1-201ENST00000369626 3910 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.289e-9■■□□□ 14.1
XRN2Q9H0D6 DDIT3-202ENST00000547303 872 ntAPPRIS P1 TSL 2 BASIC13.11□□□□□ -0.313e-6■■□□□ 14.1
XRN2Q9H0D6 SLC16A1-205ENST00000478835 452 ntTSL 1 (best)12.78□□□□□ -0.369e-9■■□□□ 14.1
XRN2Q9H0D6 DIP2A-206ENST00000472364 2542 ntTSL 212.72□□□□□ -0.372e-6■■□□□ 14.1
XRN2Q9H0D6 OSBPL2-203ENST00000439951 3886 ntTSL 5 BASIC12.55□□□□□ -0.41e-6■■□□□ 14.1
XRN2Q9H0D6 OSBPL2-202ENST00000358053 3936 ntTSL 1 (best) BASIC12.53□□□□□ -0.41e-6■■□□□ 14.1
XRN2Q9H0D6 PCBD2-202ENST00000504352 961 ntTSL 512.39□□□□□ -0.431e-9■■□□□ 14.1
XRN2Q9H0D6 VPS28-204ENST00000526054 892 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.453e-6■■□□□ 14.1
XRN2Q9H0D6 OSBPL2-211ENST00000622332 754 ntTSL 311.84□□□□□ -0.512e-8■■□□□ 14.1
XRN2Q9H0D6 NQO2-205ENST00000380455 10084 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.543e-6■■□□□ 14.1
XRN2Q9H0D6 COPA-202ENST00000368069 4664 ntTSL 1 (best) BASIC11.69□□□□□ -0.543e-6■■□□□ 14.1
XRN2Q9H0D6 INTS11-212ENST00000462432 2863 ntTSL 1 (best)11.47□□□□□ -0.578e-10■■□□□ 14.1
XRN2Q9H0D6 JUP-201ENST00000310706 3200 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.583e-6■■□□□ 14.1
XRN2Q9H0D6 COPA-201ENST00000241704 4789 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.633e-6■■□□□ 14.1
XRN2Q9H0D6 JUP-203ENST00000393931 3497 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.643e-6■■□□□ 14.1
XRN2Q9H0D6 DIP2A-211ENST00000481883 3119 ntTSL 1 (best)10.88□□□□□ -0.672e-6■■□□□ 14.1
XRN2Q9H0D6 DDIT3-205ENST00000552740 951 ntTSL 1 (best) BASIC10.46□□□□□ -0.733e-6■■□□□ 14.1
XRN2Q9H0D6 LCORL-207ENST00000635767 10430 ntTSL 5 BASIC10.32□□□□□ -0.763e-6■■□□□ 14.1
XRN2Q9H0D6 GGA2-201ENST00000309859 5973 ntAPPRIS P1 TSL 1 (best) BASIC10.13□□□□□ -0.793e-6■■□□□ 14.1
XRN2Q9H0D6 MAPK1-201ENST00000215832 11022 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.83e-6■■□□□ 14.1
XRN2Q9H0D6 DIP2A-202ENST00000417564 6967 ntAPPRIS P3 TSL 1 (best) BASIC9.7□□□□□ -0.861e-6■■□□□ 14.1
XRN2Q9H0D6 DDIT3-204ENST00000551116 1067 ntTSL 1 (best) BASIC9.44□□□□□ -0.93e-6■■□□□ 14.1
XRN2Q9H0D6 NQO2-208ENST00000426637 626 ntTSL 59.04□□□□□ -0.963e-6■■□□□ 14.1
XRN2Q9H0D6 GGA2-217ENST00000570111 563 ntTSL 58.97□□□□□ -0.973e-6■■□□□ 14.1
XRN2Q9H0D6 NQO2-209ENST00000606474 470 ntTSL 3 BASIC8.71□□□□□ -1.023e-6■■□□□ 14.1
XRN2Q9H0D6 PCBD2-204ENST00000512783 5621 ntAPPRIS P1 TSL 1 (best) BASIC8.44□□□□□ -1.061e-9■■□□□ 14.1
XRN2Q9H0D6 URI1-201ENST00000360605 1579 ntAPPRIS ALT2 TSL 1 (best) BASIC6.45□□□□□ -1.383e-6■■□□□ 14.1
XRN2Q9H0D6 DDIT3-206ENST00000623876 1151 nt6.44□□□□□ -1.383e-6■■□□□ 14.1
XRN2Q9H0D6 GGA2-216ENST00000569300 572 ntTSL 46.41□□□□□ -1.383e-6■■□□□ 14.1
XRN2Q9H0D6 URI1-208ENST00000574233 486 ntTSL 36.36□□□□□ -1.393e-6■■□□□ 14.1
XRN2Q9H0D6 URI1-203ENST00000570564 514 ntTSL 46.02□□□□□ -1.453e-6■■□□□ 14.1
XRN2Q9H0D6 SQLE-203ENST00000518931 554 ntTSL 45.98□□□□□ -1.453e-6■■□□□ 14.1
XRN2Q9H0D6 SQLE-202ENST00000518604 743 ntTSL 24.9□□□□□ -1.633e-6■■□□□ 14.1
XRN2Q9H0D6 LCORL-208ENST00000637787 9431 ntTSL 54.09□□□□□ -1.753e-6■■□□□ 14.1
XRN2Q9H0D6 MAPK1-204ENST00000544786 951 ntTSL 1 (best) BASIC3.25□□□□□ -1.893e-6■■□□□ 14.1
XRN2Q9H0D6 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.271e-6■■□□□ 14.1
XRN2Q9H0D6 SH3BP4-203ENST00000409212 5231 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.181e-6■■□□□ 14.1
XRN2Q9H0D6 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC17.66■□□□□ 0.429e-9■■□□□ 14.1
XRN2Q9H0D6 NADK-203ENST00000342348 1722 ntAPPRIS ALT2 TSL 217.63■□□□□ 0.419e-9■■□□□ 14.1
XRN2Q9H0D6 NADK-202ENST00000341991 3098 ntAPPRIS P3 TSL 1 (best) BASIC13.48□□□□□ -0.259e-9■■□□□ 14.1
XRN2Q9H0D6 NADK-204ENST00000378625 3653 ntAPPRIS ALT2 TSL 1 (best) BASIC11.34□□□□□ -0.599e-9■■□□□ 14.1
XRN2Q9H0D6 PDLIM1-202ENST00000477757 850 ntTSL 225.36■■□□□ 1.657e-7■■□□□ 14.1
XRN2Q9H0D6 EPS15L1-213ENST00000599790 1921 ntTSL 522.53■■□□□ 1.27e-7■■□□□ 14.1
XRN2Q9H0D6 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.627e-7■■□□□ 14.1
XRN2Q9H0D6 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.337e-7■■□□□ 14.1
XRN2Q9H0D6 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC15.68■□□□□ 0.17e-7■■□□□ 14.1
XRN2Q9H0D6 EPS15L1-215ENST00000602022 3082 ntTSL 1 (best)12.7□□□□□ -0.387e-7■■□□□ 14.1
XRN2Q9H0D6 EPS15L1-201ENST00000248070 2924 ntTSL 1 (best) BASIC12.65□□□□□ -0.397e-7■■□□□ 14.1
XRN2Q9H0D6 EPS15L1-202ENST00000455140 3266 ntAPPRIS P1 TSL 2 BASIC12.54□□□□□ -0.47e-7■■□□□ 14.1
XRN2Q9H0D6 EPS15L1-204ENST00000592031 2788 ntTSL 210.46□□□□□ -0.737e-7■■□□□ 14.1
XRN2Q9H0D6 EPS15L1-203ENST00000535753 2666 ntTSL 1 (best) BASIC10.23□□□□□ -0.777e-7■■□□□ 14.1
XRN2Q9H0D6 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.264e-8■■□□□ 14.1
XRN2Q9H0D6 TUBA1C-203ENST00000548470 1105 ntTSL 213.61□□□□□ -0.234e-8■■□□□ 14.1
XRN2Q9H0D6 TUBA1C-208ENST00000552125 575 ntTSL 412.94□□□□□ -0.344e-8■■□□□ 14.1
XRN2Q9H0D6 TUBA1C-209ENST00000552448 1800 ntTSL 311.11□□□□□ -0.634e-8■■□□□ 14.1
XRN2Q9H0D6 TUBA1C-210ENST00000639419 1075 ntTSL 5 BASIC11.1□□□□□ -0.634e-8■■□□□ 14.1
XRN2Q9H0D6 TUBA1C-204ENST00000549183 696 ntTSL 2 BASIC11.1□□□□□ -0.634e-8■■□□□ 14.1
XRN2Q9H0D6 TUBA1C-202ENST00000541364 1695 ntTSL 2 BASIC10.55□□□□□ -0.724e-8■■□□□ 14.1
XRN2Q9H0D6 SEPT9-241ENST00000591934 553 ntTSL 420.97■□□□□ 0.956e-7■■□□□ 14.1
XRN2Q9H0D6 SEPT9-231ENST00000590595 569 ntTSL 319.33■□□□□ 0.686e-7■■□□□ 14.1
XRN2Q9H0D6 NACC1-203ENST00000586171 534 ntTSL 519.58■□□□□ 0.721e-6■■□□□ 14.1
XRN2Q9H0D6 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.264e-6■■□□□ 14.1
XRN2Q9H0D6 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.164e-6■■□□□ 14.1
XRN2Q9H0D6 NACC1-201ENST00000292431 4445 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.061e-6■■□□□ 14.1
XRN2Q9H0D6 PLXNA1-201ENST00000393409 9066 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.351e-6■■□□□ 14.1
XRN2Q9H0D6 TMEM45B-203ENST00000525709 247 ntTSL 58.56□□□□□ -1.041e-6■■□□□ 14.1
XRN2Q9H0D6 COL9A3-213ENST00000489045 838 ntTSL 527.57■■■□□ 22e-9■■□□□ 14.1
XRN2Q9H0D6 COL9A3-202ENST00000452372 596 ntTSL 523.43■■□□□ 1.342e-9■■□□□ 14.1
XRN2Q9H0D6 COL9A3-204ENST00000463487 760 ntTSL 522.77■■□□□ 1.242e-9■■□□□ 14.1
XRN2Q9H0D6 NAB1-201ENST00000337386 4358 ntAPPRIS P3 TSL 1 (best) BASIC11.98□□□□□ -0.492e-6■■□□□ 14
XRN2Q9H0D6 SCRIB-204ENST00000525051 1685 ntTSL 1 (best)20.72■□□□□ 0.913e-6■■□□□ 14
XRN2Q9H0D6 SCRIB-205ENST00000526832 2189 ntTSL 1 (best)18.33■□□□□ 0.523e-6■■□□□ 14
XRN2Q9H0D6 RNF43-202ENST00000577625 2198 ntTSL 2 BASIC14.39□□□□□ -0.112e-6■■□□□ 14
XRN2Q9H0D6 RNF43-205ENST00000581868 2610 ntTSL 2 BASIC13.41□□□□□ -0.262e-6■■□□□ 14
XRN2Q9H0D6 RNF43-208ENST00000584437 5575 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.332e-6■■□□□ 14
XRN2Q9H0D6 RNF43-201ENST00000407977 5516 ntAPPRIS P1 TSL 2 BASIC12.9□□□□□ -0.342e-6■■□□□ 14
XRN2Q9H0D6 RNF43-203ENST00000577716 4367 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.672e-6■■□□□ 14
XRN2Q9H0D6 RNF43-207ENST00000583753 3560 ntTSL 2 BASIC10.15□□□□□ -0.782e-6■■□□□ 14
XRN2Q9H0D6 GPT2-201ENST00000340124 3984 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.121e-6■■□□□ 14
XRN2Q9H0D6 GPT2-202ENST00000440783 4228 ntTSL 2 BASIC12.22□□□□□ -0.451e-6■■□□□ 14
XRN2Q9H0D6 SNTB1-205ENST00000520717 559 ntTSL 235.03■■■■□ 3.27e-20■■□□□ 14
XRN2Q9H0D6 ZFX-207ENST00000459724 673 ntTSL 527.68■■■□□ 2.023e-6■■□□□ 14
XRN2Q9H0D6 UGDH-208ENST00000510490 534 ntTSL 422.75■■□□□ 1.237e-20■■□□□ 14
XRN2Q9H0D6 UGDH-211ENST00000515021 861 ntTSL 522.09■■□□□ 1.137e-20■■□□□ 14
Retrieved 100 of 21,068 protein–RNA pairs in 140.4 ms