RNA–Protein interactions for RNA: ENST00000368069.7

COPA-202, Transcript of coatomer protein complex subunit alpha, humanhuman

TSL 1 (best) BASIC

Gene COPA, Length 4,664 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPA-202ENST00000368069 NISCHQ9Y2I1 1504 aa20.98■□□□□ 0.95
COPA-202ENST00000368069 DCAF8L2P0C7V8 631 aa20.22■□□□□ 0.83
COPA-202ENST00000368069 SUPT5HO00267 1087 aaKnown RBP19.75■□□□□ 0.75
COPA-202ENST00000368069 SHROOM4Q9ULL8 1493 aa19.63■□□□□ 0.73
COPA-202ENST00000368069 EHMT2Q96KQ7 1210 aa18.77■□□□□ 0.6
COPA-202ENST00000368069 PCGF6Q9BYE7 350 aa18.6■□□□□ 0.57
COPA-202ENST00000368069 FAM9AQ8IZU1 332 aaPredicted RBP18.5■□□□□ 0.55
COPA-202ENST00000368069 TRIM41Q8WV44 630 aa18.28■□□□□ 0.52
COPA-202ENST00000368069 TTBK1Q5TCY1 1321 aaPredicted RBP18.17■□□□□ 0.5
COPA-202ENST00000368069 CHIC1Q5VXU3 224 aa18.12■□□□□ 0.49
COPA-202ENST00000368069 APLP2Q06481 763 aa18.12■□□□□ 0.49
COPA-202ENST00000368069 ZEB1P37275 1124 aaPredicted RBP18.07■□□□□ 0.48
COPA-202ENST00000368069 HRCP23327 699 aa17.99■□□□□ 0.47
COPA-202ENST00000368069 LOC105371045A0A1W2PR82 267 aa17.95■□□□□ 0.46
COPA-202ENST00000368069 CCER1Q8TC90 406 aaPredicted RBP17.95■□□□□ 0.46
COPA-202ENST00000368069 TRIM26Q12899 539 aaPredicted RBP17.92■□□□□ 0.46
COPA-202ENST00000368069 RANGAP1P46060 587 aaPredicted RBP17.86■□□□□ 0.45
COPA-202ENST00000368069 PPARGC1BQ86YN6 1023 aaKnown RBP17.84■□□□□ 0.45
COPA-202ENST00000368069 UBTFP17480 764 aaKnown RBP17.83■□□□□ 0.45
COPA-202ENST00000368069 PELP1Q8IZL8 1130 aaKnown RBP17.77■□□□□ 0.44
COPA-202ENST00000368069 CENPBP07199 599 aaPredicted RBP17.75■□□□□ 0.43
COPA-202ENST00000368069 ZCCHC6Q5VYS8 1495 aaKnown RBP17.52■□□□□ 0.39
COPA-202ENST00000368069 ATP1B4Q9UN42 357 aaPredicted RBP17.49■□□□□ 0.39
COPA-202ENST00000368069 YTHDC1Q96MU7 727 aaKnown RBP17.48■□□□□ 0.39
COPA-202ENST00000368069 ABCC9O60706 1549 aa17.43■□□□□ 0.38
COPA-202ENST00000368069 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.36■□□□□ 0.37
COPA-202ENST00000368069 HNRNPUL2Q1KMD3 747 aaKnown RBP17.32■□□□□ 0.36
COPA-202ENST00000368069 CCDC180Q9P1Z9 1646 aa17.27■□□□□ 0.35
COPA-202ENST00000368069 ITGAEP38570 1179 aa17.21■□□□□ 0.35
COPA-202ENST00000368069 PABPN1Q86U42 306 aaKnown RBP eCLIP17.18■□□□□ 0.349e-7■□□□□ 11
COPA-202ENST00000368069 DIEXFQ68CQ4 756 aaKnown RBP17.16■□□□□ 0.34
COPA-202ENST00000368069 SCRIBQ14160 1630 aa17.14■□□□□ 0.33
COPA-202ENST00000368069 DCAF1Q9Y4B6 1507 aa17.13■□□□□ 0.33
COPA-202ENST00000368069 MYO15BQ96JP2 1530 aa17.11■□□□□ 0.33
COPA-202ENST00000368069 NEFLP07196 543 aa17.11■□□□□ 0.33
COPA-202ENST00000368069 ERICH6Q7L0X2 663 aa17.02■□□□□ 0.32
COPA-202ENST00000368069 CSRNP3Q8WYN3 585 aa16.95■□□□□ 0.3
COPA-202ENST00000368069 MYT1Q01538 1121 aa16.93■□□□□ 0.3
COPA-202ENST00000368069 GTF3C3Q9Y5Q9 886 aa16.86■□□□□ 0.29
COPA-202ENST00000368069 ZNF316A6NFI3 1004 aaPredicted RBP16.84■□□□□ 0.29
COPA-202ENST00000368069 FAM50AQ14320 339 aaKnown RBP16.84■□□□□ 0.29
COPA-202ENST00000368069 RSF1Q96T23 1441 aaPredicted RBP16.83■□□□□ 0.29
COPA-202ENST00000368069 ACIN1Q9UKV3 1341 aaKnown RBP16.76■□□□□ 0.27
COPA-202ENST00000368069 POLR3GLQ9BT43 218 aa16.73■□□□□ 0.27
COPA-202ENST00000368069 NEUROD1Q13562 356 aa16.73■□□□□ 0.27
COPA-202ENST00000368069 CNGB1Q14028 1251 aaPredicted RBP16.66■□□□□ 0.26
COPA-202ENST00000368069 TRIM52Q96A61 297 aa16.59■□□□□ 0.25
COPA-202ENST00000368069 P3H3Q8IVL6 736 aa16.59■□□□□ 0.25
COPA-202ENST00000368069 BCANQ96GW7 911 aa16.55■□□□□ 0.24
COPA-202ENST00000368069 RB1CC1Q8TDY2 1594 aa16.54■□□□□ 0.24
COPA-202ENST00000368069 NACADO15069 1562 aa16.53■□□□□ 0.24
COPA-202ENST00000368069 ANP32CO43423 234 aa16.52■□□□□ 0.23
COPA-202ENST00000368069 CEP162Q5TB80 1403 aa16.51■□□□□ 0.23
COPA-202ENST00000368069 CECR2Q9BXF3 1484 aa16.48■□□□□ 0.23
COPA-202ENST00000368069 SCAF1Q9H7N4 1312 aaKnown RBP16.48■□□□□ 0.23
COPA-202ENST00000368069 CLIP1P30622 1438 aa16.47■□□□□ 0.23
COPA-202ENST00000368069 MYT1LQ9UL68 1186 aa16.45■□□□□ 0.22
COPA-202ENST00000368069 EEA1Q15075 1411 aa16.45■□□□□ 0.22
COPA-202ENST00000368069 GOLGA3Q08378 1498 aa16.43■□□□□ 0.22
COPA-202ENST00000368069 WRNQ14191 1432 aaPredicted RBP eCLIP16.38■□□□□ 0.21
COPA-202ENST00000368069 TNIKQ9UKE5 1360 aa16.38■□□□□ 0.21
COPA-202ENST00000368069 ARID3CA6NKF2 412 aa16.37■□□□□ 0.21
COPA-202ENST00000368069 BAZ1AQ9NRL2 1556 aaPredicted RBP16.37■□□□□ 0.21
COPA-202ENST00000368069 ZNF326Q5BKZ1 582 aaKnown RBP16.36■□□□□ 0.21
COPA-202ENST00000368069 MIER1Q8N108 512 aa16.35■□□□□ 0.21
COPA-202ENST00000368069 MROH2BQ7Z745 1585 aa16.32■□□□□ 0.2
COPA-202ENST00000368069 DAXXQ9UER7 740 aaPredicted RBP16.3■□□□□ 0.2
COPA-202ENST00000368069 DDX10Q13206 875 aaKnown RBP16.29■□□□□ 0.2
COPA-202ENST00000368069 TONSLQ96HA7 1378 aa16.28■□□□□ 0.2
COPA-202ENST00000368069 FBLN2P98095 1184 aa16.28■□□□□ 0.2
COPA-202ENST00000368069 CEP164Q9UPV0 1460 aa16.27■□□□□ 0.2
COPA-202ENST00000368069 CLSPNQ9HAW4 1339 aa16.26■□□□□ 0.19
COPA-202ENST00000368069 SOGA1O94964 1423 aa16.25■□□□□ 0.19
COPA-202ENST00000368069 BAZ1BQ9UIG0 1483 aaKnown RBP16.25■□□□□ 0.19
COPA-202ENST00000368069 CDK11AQ9UQ88 783 aaPredicted RBP16.24■□□□□ 0.19
COPA-202ENST00000368069 FKBP8Q14318 412 aa16.22■□□□□ 0.19
COPA-202ENST00000368069 ABCC8Q09428 1581 aa16.18■□□□□ 0.18
COPA-202ENST00000368069 ZNF777Q9ULD5 760 aaPredicted RBP16.18■□□□□ 0.18
COPA-202ENST00000368069 SLC4A1APQ9BWU0 796 aaKnown RBP16.17■□□□□ 0.18
COPA-202ENST00000368069 CCDC88BA6NC98 1476 aa16.17■□□□□ 0.18
COPA-202ENST00000368069 RTL5Q5HYW3 569 aaPredicted RBP16.15■□□□□ 0.18
COPA-202ENST00000368069 CHIC2Q9UKJ5 165 aa16.15■□□□□ 0.18
COPA-202ENST00000368069 WIZO95785 1651 aa16.13■□□□□ 0.17
COPA-202ENST00000368069 KIF27Q86VH2 1401 aa16.13■□□□□ 0.17
COPA-202ENST00000368069 MTUS2Q5JR59 1369 aa16.13■□□□□ 0.17
COPA-202ENST00000368069 HNRNPUQ00839 825 aaKnown RBP eCLIP16.13■□□□□ 0.17
COPA-202ENST00000368069 HIRIP3Q9BW71 556 aaPredicted RBP16.12■□□□□ 0.17
COPA-202ENST00000368069 FAM9BQ8IZU0 186 aa16.04■□□□□ 0.16
COPA-202ENST00000368069 VPS8Q8N3P4 1428 aa16.02■□□□□ 0.16
COPA-202ENST00000368069 TOP2AP11388 1531 aaKnown RBP16.02■□□□□ 0.16
COPA-202ENST00000368069 RRP7BPQ9NSQ0 103 aa15.99■□□□□ 0.15
COPA-202ENST00000368069 CCNB3Q8WWL7 1395 aa15.97■□□□□ 0.15
COPA-202ENST00000368069 SIN3AQ96ST3 1273 aa15.95■□□□□ 0.14
COPA-202ENST00000368069 MRS2Q9HD23 443 aa15.94■□□□□ 0.14
COPA-202ENST00000368069 EIF4G2P78344 907 aaKnown RBP eCLIP15.92■□□□□ 0.14
COPA-202ENST00000368069 KANK4Q5T7N3 995 aaPredicted RBP15.91■□□□□ 0.14
COPA-202ENST00000368069 ANP32AP39687 249 aaKnown RBP15.91■□□□□ 0.14
COPA-202ENST00000368069 IRX6P78412 446 aaPredicted RBP15.91■□□□□ 0.14
COPA-202ENST00000368069 CUX2O14529 1486 aa15.9■□□□□ 0.14
COPA-202ENST00000368069 CARMIL1Q5VZK9 1371 aa15.88■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms