RNA–Protein interactions for RNA: ENST00000463487.1

COL9A3-204, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 760 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-204ENST00000463487 NISCHQ9Y2I1 1504 aa47.38■■■■■ 5.18
COL9A3-204ENST00000463487 CCDC180Q9P1Z9 1646 aa42.06■■■■■ 4.32
COL9A3-204ENST00000463487 ABCC9O60706 1549 aa40.8■■■■■ 4.12
COL9A3-204ENST00000463487 ZCCHC6Q5VYS8 1495 aaKnown RBP39.53■■■■□ 3.92
COL9A3-204ENST00000463487 DCAF8L2P0C7V8 631 aa39.5■■■■□ 3.91
COL9A3-204ENST00000463487 NACADO15069 1562 aa39.48■■■■□ 3.91
COL9A3-204ENST00000463487 RB1CC1Q8TDY2 1594 aa39.46■■■■□ 3.91
COL9A3-204ENST00000463487 MYO15BQ96JP2 1530 aa39.34■■■■□ 3.89
COL9A3-204ENST00000463487 DCAF1Q9Y4B6 1507 aa39.26■■■■□ 3.88
COL9A3-204ENST00000463487 UNC13AQ9UPW8 1703 aa38.45■■■■□ 3.75
COL9A3-204ENST00000463487 SCRIBQ14160 1630 aa38.34■■■■□ 3.73
COL9A3-204ENST00000463487 PABPN1Q86U42 306 aaKnown RBP eCLIP38.14■■■■□ 3.76e-9■■■□□ 18.3
COL9A3-204ENST00000463487 BICRAQ9NZM4 1560 aa38.12■■■■□ 3.69
COL9A3-204ENST00000463487 SHROOM4Q9ULL8 1493 aa37.94■■■■□ 3.66
COL9A3-204ENST00000463487 EIF4G1Q04637 1599 aaKnown RBP37.17■■■■□ 3.54
COL9A3-204ENST00000463487 DNAJC5BQ9UF47 199 aa37.05■■■■□ 3.52
COL9A3-204ENST00000463487 CC2D2AQ9P2K1 1620 aa36.92■■■■□ 3.5
COL9A3-204ENST00000463487 CECR2Q9BXF3 1484 aa36.8■■■■□ 3.48
COL9A3-204ENST00000463487 BAZ1AQ9NRL2 1556 aaPredicted RBP36.76■■■■□ 3.48
COL9A3-204ENST00000463487 SMARCA4P51532 1647 aa36.7■■■■□ 3.47
COL9A3-204ENST00000463487 SMARCA2P51531 1590 aa36.49■■■■□ 3.43
COL9A3-204ENST00000463487 MROH2BQ7Z745 1585 aa36.47■■■■□ 3.43
COL9A3-204ENST00000463487 ATAD2BQ9ULI0 1458 aa36.42■■■■□ 3.42
COL9A3-204ENST00000463487 NCAPD3P42695 1498 aa36.38■■■■□ 3.41
COL9A3-204ENST00000463487 PEG3Q9GZU2 1588 aa36.36■■■■□ 3.41
COL9A3-204ENST00000463487 HMGXB3Q12766 1538 aa36.27■■■■□ 3.4
COL9A3-204ENST00000463487 BAZ1BQ9UIG0 1483 aaKnown RBP36.2■■■■□ 3.39
COL9A3-204ENST00000463487 RSF1Q96T23 1441 aaPredicted RBP36.18■■■■□ 3.38
COL9A3-204ENST00000463487 WIZO95785 1651 aa36.1■■■■□ 3.37
COL9A3-204ENST00000463487 TOP2AP11388 1531 aaKnown RBP35.8■■■■□ 3.32
COL9A3-204ENST00000463487 SUPT5HO00267 1087 aaKnown RBP35.51■■■■□ 3.28
COL9A3-204ENST00000463487 LAMC3Q9Y6N6 1575 aa35.42■■■■□ 3.26
COL9A3-204ENST00000463487 CADPSQ9ULU8 1353 aa35.35■■■■□ 3.25
COL9A3-204ENST00000463487 NESP48681 1621 aa35.35■■■■□ 3.25
COL9A3-204ENST00000463487 CCDC88BA6NC98 1476 aa35.32■■■■□ 3.24
COL9A3-204ENST00000463487 ERCC6Q03468 1493 aa35.25■■■■□ 3.23
COL9A3-204ENST00000463487 PDS5BQ9NTI5 1447 aa35.21■■■■□ 3.23
COL9A3-204ENST00000463487 CFTRP13569 1480 aa35.19■■■■□ 3.22
COL9A3-204ENST00000463487 PRDM2Q13029 1718 aa34.99■■■■□ 3.19
COL9A3-204ENST00000463487 KIF21AQ7Z4S6 1674 aa34.98■■■■□ 3.19
COL9A3-204ENST00000463487 FANCD2Q9BXW9 1451 aa34.95■■■■□ 3.19
COL9A3-204ENST00000463487 CEP164Q9UPV0 1460 aa34.91■■■■□ 3.18
COL9A3-204ENST00000463487 THOC2Q8NI27 1593 aaKnown RBP34.79■■■■□ 3.16
COL9A3-204ENST00000463487 MRC2Q9UBG0 1479 aa34.78■■■■□ 3.16
COL9A3-204ENST00000463487 CUX2O14529 1486 aa34.76■■■■□ 3.15
COL9A3-204ENST00000463487 WDR62O43379 1518 aa34.63■■■■□ 3.13
COL9A3-204ENST00000463487 URB2Q14146 1524 aaKnown RBP34.52■■■■□ 3.12
COL9A3-204ENST00000463487 ABCC8Q09428 1581 aa34.52■■■■□ 3.12
COL9A3-204ENST00000463487 DNMBPQ6XZF7 1577 aa34.42■■■■□ 3.1
COL9A3-204ENST00000463487 TOPBP1Q92547 1522 aa34.4■■■■□ 3.1
COL9A3-204ENST00000463487 CUX1P39880 1505 aa34.21■■■■□ 3.07
COL9A3-204ENST00000463487 WRNQ14191 1432 aaPredicted RBP eCLIP34.17■■■■□ 3.06
COL9A3-204ENST00000463487 IFT140Q96RY7 1462 aa34.16■■■■□ 3.06
COL9A3-204ENST00000463487 POLA1P09884 1462 aaPredicted RBP34.12■■■■□ 3.05
COL9A3-204ENST00000463487 FGD5Q6ZNL6 1462 aa34.09■■■■□ 3.05
COL9A3-204ENST00000463487 TOP2BQ02880 1626 aa34.05■■■■□ 3.04
COL9A3-204ENST00000463487 BIVM-ERCC5R4GMW8 1640 aa34.04■■■■□ 3.04
COL9A3-204ENST00000463487 SOGA1O94964 1423 aa34.02■■■■□ 3.04
COL9A3-204ENST00000463487 SYNJ1O43426 1573 aa33.99■■■■□ 3.03
COL9A3-204ENST00000463487 TARBP1Q13395 1621 aaKnown RBP33.97■■■■□ 3.03
COL9A3-204ENST00000463487 RAD54L2Q9Y4B4 1467 aa33.93■■■■□ 3.02
COL9A3-204ENST00000463487 ZNF608Q9ULD9 1512 aaPredicted RBP33.88■■■■□ 3.01
COL9A3-204ENST00000463487 WDR97A6NE52 1622 aa33.86■■■■□ 3.01
COL9A3-204ENST00000463487 EIF4G3O43432 1585 aaKnown RBP33.83■■■■□ 3.01
COL9A3-204ENST00000463487 ABCA10Q8WWZ4 1543 aa33.79■■■■□ 3
COL9A3-204ENST00000463487 AQRO60306 1485 aaKnown RBP eCLIP33.75■■■□□ 2.999e-7■■■■□ 19.5
COL9A3-204ENST00000463487 TDRD9Q8NDG6 1382 aaKnown RBP33.74■■■□□ 2.99
COL9A3-204ENST00000463487 GAPVD1Q14C86 1478 aa33.63■■■□□ 2.97
COL9A3-204ENST00000463487 ABCA5Q8WWZ7 1642 aa33.61■■■□□ 2.97
COL9A3-204ENST00000463487 GRIN2BQ13224 1484 aa33.61■■■□□ 2.97
COL9A3-204ENST00000463487 TRIM41Q8WV44 630 aa33.58■■■□□ 2.97
COL9A3-204ENST00000463487 PBRM1Q86U86 1689 aa33.54■■■□□ 2.96
COL9A3-204ENST00000463487 MAGI1Q96QZ7 1491 aaPredicted RBP33.5■■■□□ 2.95
COL9A3-204ENST00000463487 SNAPC4Q5SXM2 1469 aa33.49■■■□□ 2.95
COL9A3-204ENST00000463487 KIF27Q86VH2 1401 aa33.47■■■□□ 2.95
COL9A3-204ENST00000463487 ERICH3Q5RHP9 1530 aa33.42■■■□□ 2.94
COL9A3-204ENST00000463487 FBLN2P98095 1184 aa33.37■■■□□ 2.93
COL9A3-204ENST00000463487 OSCARQ8IYS5 282 aa33.36■■■□□ 2.93
COL9A3-204ENST00000463487 SYNJ2O15056 1496 aa33.36■■■□□ 2.93
COL9A3-204ENST00000463487 CHMP7Q8WUX9 453 aaPredicted RBP33.34■■■□□ 2.93
COL9A3-204ENST00000463487 CHD1O14646 1710 aa33.33■■■□□ 2.93
COL9A3-204ENST00000463487 ADAMTS12P58397 1594 aa33.29■■■□□ 2.92
COL9A3-204ENST00000463487 DNAJC5Q9H3Z4 198 aa33.28■■■□□ 2.92
COL9A3-204ENST00000463487 FHAD1B1AJZ9 1412 aa33.28■■■□□ 2.92
COL9A3-204ENST00000463487 CHIC1Q5VXU3 224 aa33.26■■■□□ 2.91
COL9A3-204ENST00000463487 CUL7Q14999 1698 aa33.2■■■□□ 2.91
COL9A3-204ENST00000463487 IGF1RP08069 1367 aa33.2■■■□□ 2.9
COL9A3-204ENST00000463487 GRIN2AQ12879 1464 aa33.16■■■□□ 2.9
COL9A3-204ENST00000463487 RUSC2Q8N2Y8 1516 aa33.08■■■□□ 2.89
COL9A3-204ENST00000463487 EEA1Q15075 1411 aa33.06■■■□□ 2.88
COL9A3-204ENST00000463487 CARMIL1Q5VZK9 1371 aa33.06■■■□□ 2.88
COL9A3-204ENST00000463487 NUP160Q12769 1436 aa32.97■■■□□ 2.87
COL9A3-204ENST00000463487 CLASP1Q7Z460 1538 aa32.97■■■□□ 2.87
COL9A3-204ENST00000463487 CEP170Q5SW79 1584 aa32.94■■■□□ 2.86
COL9A3-204ENST00000463487 RAPGEF2Q9Y4G8 1499 aa32.92■■■□□ 2.86
COL9A3-204ENST00000463487 CSRNP3Q8WYN3 585 aa32.9■■■□□ 2.86
COL9A3-204ENST00000463487 PRXQ9BXM0 1461 aa32.82■■■□□ 2.84
COL9A3-204ENST00000463487 FAM9AQ8IZU1 332 aaPredicted RBP32.81■■■□□ 2.84
COL9A3-204ENST00000463487 ARHGEF11O15085 1522 aa32.77■■■□□ 2.84
COL9A3-204ENST00000463487 KIAA0586Q9BVV6 1533 aa32.77■■■□□ 2.84
Retrieved 100 of 20,778 RNA–protein pairs in 9.4 ms