RNA–Protein interactions for RNA: ENST00000577625.5

RNF43-202, Transcript of ring finger protein 43, humanhuman

TSL 2 BASIC

Gene RNF43, Length 2,198 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF43-202ENST00000577625 NISCHQ9Y2I1 1504 aa30.75■■■□□ 2.51
RNF43-202ENST00000577625 CCDC180Q9P1Z9 1646 aa26.78■■□□□ 1.88
RNF43-202ENST00000577625 ZCCHC6Q5VYS8 1495 aaKnown RBP25.88■■□□□ 1.73
RNF43-202ENST00000577625 DCAF1Q9Y4B6 1507 aa25.42■■□□□ 1.66
RNF43-202ENST00000577625 DCAF8L2P0C7V8 631 aa25.27■■□□□ 1.64
RNF43-202ENST00000577625 SHROOM4Q9ULL8 1493 aa25.18■■□□□ 1.62
RNF43-202ENST00000577625 ABCC9O60706 1549 aa25.16■■□□□ 1.62
RNF43-202ENST00000577625 MYO15BQ96JP2 1530 aa25.04■■□□□ 1.6
RNF43-202ENST00000577625 NACADO15069 1562 aa24.86■■□□□ 1.57
RNF43-202ENST00000577625 SCRIBQ14160 1630 aa24.65■■□□□ 1.54
RNF43-202ENST00000577625 RB1CC1Q8TDY2 1594 aa24.62■■□□□ 1.53
RNF43-202ENST00000577625 SUPT5HO00267 1087 aaKnown RBP24.26■■□□□ 1.47
RNF43-202ENST00000577625 UNC13AQ9UPW8 1703 aa24.26■■□□□ 1.47
RNF43-202ENST00000577625 BICRAQ9NZM4 1560 aa23.93■■□□□ 1.42
RNF43-202ENST00000577625 RSF1Q96T23 1441 aaPredicted RBP23.9■■□□□ 1.42
RNF43-202ENST00000577625 CECR2Q9BXF3 1484 aa23.9■■□□□ 1.42
RNF43-202ENST00000577625 MROH2BQ7Z745 1585 aa23.78■■□□□ 1.4
RNF43-202ENST00000577625 BAZ1AQ9NRL2 1556 aaPredicted RBP23.73■■□□□ 1.39
RNF43-202ENST00000577625 PABPN1Q86U42 306 aaKnown RBP eCLIP23.72■■□□□ 1.39
RNF43-202ENST00000577625 SMARCA4P51532 1647 aa23.64■■□□□ 1.38
RNF43-202ENST00000577625 WIZO95785 1651 aa23.63■■□□□ 1.37
RNF43-202ENST00000577625 TOP2AP11388 1531 aaKnown RBP23.35■■□□□ 1.33
RNF43-202ENST00000577625 PEG3Q9GZU2 1588 aa23.33■■□□□ 1.33
RNF43-202ENST00000577625 CHIC1Q5VXU3 224 aa23.31■■□□□ 1.32
RNF43-202ENST00000577625 ATAD2BQ9ULI0 1458 aa23.17■■□□□ 1.3
RNF43-202ENST00000577625 SMARCA2P51531 1590 aa23.17■■□□□ 1.3
RNF43-202ENST00000577625 EIF4G1Q04637 1599 aaKnown RBP23.17■■□□□ 1.3
RNF43-202ENST00000577625 CCDC88BA6NC98 1476 aa23.1■■□□□ 1.29
RNF43-202ENST00000577625 BAZ1BQ9UIG0 1483 aaKnown RBP23.05■■□□□ 1.28
RNF43-202ENST00000577625 HMGXB3Q12766 1538 aa22.95■■□□□ 1.26
RNF43-202ENST00000577625 NCAPD3P42695 1498 aa22.93■■□□□ 1.26
RNF43-202ENST00000577625 CC2D2AQ9P2K1 1620 aa22.8■■□□□ 1.24
RNF43-202ENST00000577625 TRIM41Q8WV44 630 aa22.77■■□□□ 1.24
RNF43-202ENST00000577625 ABCC8Q09428 1581 aa22.71■■□□□ 1.23
RNF43-202ENST00000577625 WRNQ14191 1432 aaPredicted RBP eCLIP22.49■■□□□ 1.19
RNF43-202ENST00000577625 PRDM2Q13029 1718 aa22.48■■□□□ 1.19
RNF43-202ENST00000577625 CFTRP13569 1480 aa22.48■■□□□ 1.19
RNF43-202ENST00000577625 SYNJ1O43426 1573 aa22.45■■□□□ 1.18
RNF43-202ENST00000577625 LOC105371045A0A1W2PR82 267 aa22.43■■□□□ 1.18
RNF43-202ENST00000577625 PELP1Q8IZL8 1130 aaKnown RBP22.39■■□□□ 1.17
RNF43-202ENST00000577625 FAM9AQ8IZU1 332 aaPredicted RBP22.39■■□□□ 1.17
RNF43-202ENST00000577625 HRCP23327 699 aa22.37■■□□□ 1.17
RNF43-202ENST00000577625 CADPSQ9ULU8 1353 aa22.34■■□□□ 1.17
RNF43-202ENST00000577625 TOP2BQ02880 1626 aa22.33■■□□□ 1.16
RNF43-202ENST00000577625 BIVM-ERCC5R4GMW8 1640 aa22.32■■□□□ 1.16
RNF43-202ENST00000577625 SOGA1O94964 1423 aa22.27■■□□□ 1.15
RNF43-202ENST00000577625 CUX1P39880 1505 aa22.24■■□□□ 1.15
RNF43-202ENST00000577625 EEA1Q15075 1411 aa22.21■■□□□ 1.15
RNF43-202ENST00000577625 RUSC2Q8N2Y8 1516 aa22.2■■□□□ 1.14
RNF43-202ENST00000577625 DNAJC5BQ9UF47 199 aa22.17■■□□□ 1.14
RNF43-202ENST00000577625 NESP48681 1621 aa22.16■■□□□ 1.14
RNF43-202ENST00000577625 LAMC3Q9Y6N6 1575 aa22.15■■□□□ 1.14
RNF43-202ENST00000577625 FANCD2Q9BXW9 1451 aa22.12■■□□□ 1.13
RNF43-202ENST00000577625 EHMT2Q96KQ7 1210 aa22.08■■□□□ 1.13
RNF43-202ENST00000577625 CSRNP3Q8WYN3 585 aa22.06■■□□□ 1.12
RNF43-202ENST00000577625 KIF21BO75037 1637 aa21.99■■□□□ 1.11
RNF43-202ENST00000577625 DNMBPQ6XZF7 1577 aa21.98■■□□□ 1.11
RNF43-202ENST00000577625 CEP164Q9UPV0 1460 aa21.97■■□□□ 1.11
RNF43-202ENST00000577625 FGD5Q6ZNL6 1462 aa21.95■■□□□ 1.1
RNF43-202ENST00000577625 KIF21AQ7Z4S6 1674 aa21.95■■□□□ 1.1
RNF43-202ENST00000577625 GOLGA3Q08378 1498 aa21.94■■□□□ 1.1
RNF43-202ENST00000577625 PDS5BQ9NTI5 1447 aa21.93■■□□□ 1.1
RNF43-202ENST00000577625 TOPBP1Q92547 1522 aa21.92■■□□□ 1.1
RNF43-202ENST00000577625 TNIKQ9UKE5 1360 aa21.88■■□□□ 1.09
RNF43-202ENST00000577625 KIF27Q86VH2 1401 aa21.88■■□□□ 1.09
RNF43-202ENST00000577625 URB2Q14146 1524 aaKnown RBP21.87■■□□□ 1.09
RNF43-202ENST00000577625 POLA1P09884 1462 aaPredicted RBP21.82■■□□□ 1.08
RNF43-202ENST00000577625 RAPGEF2Q9Y4G8 1499 aa21.82■■□□□ 1.08
RNF43-202ENST00000577625 CUX2O14529 1486 aa21.81■■□□□ 1.08
RNF43-202ENST00000577625 PRXQ9BXM0 1461 aa21.8■■□□□ 1.08
RNF43-202ENST00000577625 CEP162Q5TB80 1403 aa21.8■■□□□ 1.08
RNF43-202ENST00000577625 ERICH3Q5RHP9 1530 aa21.79■■□□□ 1.08
RNF43-202ENST00000577625 UBTFP17480 764 aaKnown RBP21.78■■□□□ 1.08
RNF43-202ENST00000577625 RAD54L2Q9Y4B4 1467 aa21.75■■□□□ 1.07
RNF43-202ENST00000577625 ABCA10Q8WWZ4 1543 aa21.75■■□□□ 1.07
RNF43-202ENST00000577625 WDR97A6NE52 1622 aa21.75■■□□□ 1.07
RNF43-202ENST00000577625 MYT1Q01538 1121 aa21.72■■□□□ 1.07
RNF43-202ENST00000577625 IGF1RP08069 1367 aa21.68■■□□□ 1.06
RNF43-202ENST00000577625 MRC2Q9UBG0 1479 aa21.68■■□□□ 1.06
RNF43-202ENST00000577625 PPARGC1BQ86YN6 1023 aaKnown RBP21.66■■□□□ 1.06
RNF43-202ENST00000577625 TARBP1Q13395 1621 aaKnown RBP21.61■■□□□ 1.05
RNF43-202ENST00000577625 ABCA5Q8WWZ7 1642 aa21.6■■□□□ 1.05
RNF43-202ENST00000577625 PCGF6Q9BYE7 350 aa21.6■■□□□ 1.05
RNF43-202ENST00000577625 CLIP1P30622 1438 aa21.59■■□□□ 1.05
RNF43-202ENST00000577625 WDR62O43379 1518 aa21.58■■□□□ 1.05
RNF43-202ENST00000577625 CARMIL1Q5VZK9 1371 aa21.56■■□□□ 1.04
RNF43-202ENST00000577625 CUL7Q14999 1698 aa21.55■■□□□ 1.04
RNF43-202ENST00000577625 TRIM26Q12899 539 aaPredicted RBP21.55■■□□□ 1.04
RNF43-202ENST00000577625 ERCC6Q03468 1493 aa21.53■■□□□ 1.04
RNF43-202ENST00000577625 THOC2Q8NI27 1593 aaKnown RBP21.52■■□□□ 1.04
RNF43-202ENST00000577625 TDRD9Q8NDG6 1382 aaKnown RBP21.5■■□□□ 1.03
RNF43-202ENST00000577625 GAPVD1Q14C86 1478 aa21.5■■□□□ 1.03
RNF43-202ENST00000577625 PBRM1Q86U86 1689 aa21.45■■□□□ 1.02
RNF43-202ENST00000577625 VPS8Q8N3P4 1428 aa21.43■■□□□ 1.02
RNF43-202ENST00000577625 IFT140Q96RY7 1462 aa21.42■■□□□ 1.02
RNF43-202ENST00000577625 RANGAP1P46060 587 aaPredicted RBP21.41■■□□□ 1.02
RNF43-202ENST00000577625 ARAP1Q96P48 1450 aa21.4■■□□□ 1.02
RNF43-202ENST00000577625 CTTNBP2Q8WZ74 1663 aa21.38■■□□□ 1.01
RNF43-202ENST00000577625 AQRO60306 1485 aaKnown RBP eCLIP21.35■■□□□ 1.019e-8■■■■□ 23.6
RNF43-202ENST00000577625 ARHGAP35Q9NRY4 1499 aa21.35■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms