RNA–Protein interactions for RNA: ENST00000309859.8

GGA2-201, Transcript of golgi associated, gamma adaptin ear containing, ARF binding protein 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene GGA2, Length 5,973 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GGA2-201ENST00000309859 PCGF6Q9BYE7 350 aa17.99■□□□□ 0.47
GGA2-201ENST00000309859 SUPT5HO00267 1087 aaKnown RBP17.92■□□□□ 0.46
GGA2-201ENST00000309859 PELP1Q8IZL8 1130 aaKnown RBP17.89■□□□□ 0.46
GGA2-201ENST00000309859 PPARGC1BQ86YN6 1023 aaKnown RBP17.83■□□□□ 0.44
GGA2-201ENST00000309859 HRCP23327 699 aa17.7■□□□□ 0.42
GGA2-201ENST00000309859 SHROOM4Q9ULL8 1493 aa17.62■□□□□ 0.41
GGA2-201ENST00000309859 EHMT2Q96KQ7 1210 aa17.45■□□□□ 0.38
GGA2-201ENST00000309859 NISCHQ9Y2I1 1504 aa17.41■□□□□ 0.38
GGA2-201ENST00000309859 MYT1Q01538 1121 aa17.37■□□□□ 0.37
GGA2-201ENST00000309859 DCAF8L2P0C7V8 631 aa17.31■□□□□ 0.36
GGA2-201ENST00000309859 YTHDC1Q96MU7 727 aaKnown RBP17.14■□□□□ 0.33
GGA2-201ENST00000309859 CENPBP07199 599 aaPredicted RBP17.06■□□□□ 0.32
GGA2-201ENST00000309859 TTBK1Q5TCY1 1321 aaPredicted RBP16.99■□□□□ 0.31
GGA2-201ENST00000309859 SCAF1Q9H7N4 1312 aaKnown RBP16.99■□□□□ 0.31
GGA2-201ENST00000309859 GTF3C3Q9Y5Q9 886 aa16.9■□□□□ 0.3
GGA2-201ENST00000309859 FAM9AQ8IZU1 332 aaPredicted RBP16.89■□□□□ 0.29
GGA2-201ENST00000309859 ZEB1P37275 1124 aaPredicted RBP16.87■□□□□ 0.29
GGA2-201ENST00000309859 LOC105371045A0A1W2PR82 267 aa16.85■□□□□ 0.29
GGA2-201ENST00000309859 CCER1Q8TC90 406 aaPredicted RBP16.8■□□□□ 0.28
GGA2-201ENST00000309859 TRIM26Q12899 539 aaPredicted RBP16.77■□□□□ 0.28
GGA2-201ENST00000309859 ACIN1Q9UKV3 1341 aaKnown RBP16.64■□□□□ 0.25
GGA2-201ENST00000309859 CHIC1Q5VXU3 224 aa16.61■□□□□ 0.25
GGA2-201ENST00000309859 NEUROD1Q13562 356 aa16.6■□□□□ 0.25
GGA2-201ENST00000309859 ERICH6Q7L0X2 663 aa16.54■□□□□ 0.24
GGA2-201ENST00000309859 DIEXFQ68CQ4 756 aaKnown RBP16.52■□□□□ 0.24
GGA2-201ENST00000309859 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.52■□□□□ 0.23
GGA2-201ENST00000309859 BCANQ96GW7 911 aa16.31■□□□□ 0.2
GGA2-201ENST00000309859 TRIM41Q8WV44 630 aa16.23■□□□□ 0.19
GGA2-201ENST00000309859 BCL11AQ9H165 835 aa16.23■□□□□ 0.19
GGA2-201ENST00000309859 MYO15BQ96JP2 1530 aa16.22■□□□□ 0.19
GGA2-201ENST00000309859 NEFLP07196 543 aa16.09■□□□□ 0.17
GGA2-201ENST00000309859 RANGAP1P46060 587 aaPredicted RBP16.08■□□□□ 0.16
GGA2-201ENST00000309859 HNRNPUL2Q1KMD3 747 aaKnown RBP15.96■□□□□ 0.15
GGA2-201ENST00000309859 ANP32EQ9BTT0 268 aa15.94■□□□□ 0.14
GGA2-201ENST00000309859 ZNF316A6NFI3 1004 aaPredicted RBP15.9■□□□□ 0.14
GGA2-201ENST00000309859 APLP2Q06481 763 aa15.89■□□□□ 0.13
GGA2-201ENST00000309859 MIER1Q8N108 512 aa15.86■□□□□ 0.13
GGA2-201ENST00000309859 DCAF1Q9Y4B6 1507 aa15.85■□□□□ 0.13
GGA2-201ENST00000309859 CSRNP3Q8WYN3 585 aa15.83■□□□□ 0.12
GGA2-201ENST00000309859 UBTFP17480 764 aaKnown RBP15.77■□□□□ 0.12
GGA2-201ENST00000309859 ITGAEP38570 1179 aa15.75■□□□□ 0.11
GGA2-201ENST00000309859 FKBP8Q14318 412 aa15.74■□□□□ 0.11
GGA2-201ENST00000309859 EIF5BO60841 1220 aaKnown RBP15.7■□□□□ 0.1
GGA2-201ENST00000309859 NBR1Q14596 966 aa15.68■□□□□ 0.1
GGA2-201ENST00000309859 RTL5Q5HYW3 569 aaPredicted RBP15.67■□□□□ 0.1
GGA2-201ENST00000309859 CNGB1Q14028 1251 aaPredicted RBP15.62■□□□□ 0.09
GGA2-201ENST00000309859 SUPT16HQ9Y5B9 1047 aaKnown RBP15.62■□□□□ 0.09
GGA2-201ENST00000309859 RTN4Q9NQC3 1192 aaKnown RBP15.61■□□□□ 0.09
GGA2-201ENST00000309859 PRKCSHP14314 528 aaPredicted RBP15.57■□□□□ 0.08
GGA2-201ENST00000309859 CCDC180Q9P1Z9 1646 aa15.57■□□□□ 0.08
GGA2-201ENST00000309859 CDK11AQ9UQ88 783 aaPredicted RBP15.55■□□□□ 0.08
GGA2-201ENST00000309859 TSHZ2Q9NRE2 1034 aa15.54■□□□□ 0.08
GGA2-201ENST00000309859 IRX6P78412 446 aaPredicted RBP15.51■□□□□ 0.07
GGA2-201ENST00000309859 CCDC136Q96JN2 1154 aa15.47■□□□□ 0.07
GGA2-201ENST00000309859 TRIM52Q96A61 297 aa15.45■□□□□ 0.06
GGA2-201ENST00000309859 ZBTB4Q9P1Z0 1013 aaPredicted RBP15.44■□□□□ 0.06
GGA2-201ENST00000309859 NPM2Q86SE8 214 aaKnown RBP15.38■□□□□ 0.05
GGA2-201ENST00000309859 RBM19Q9Y4C8 960 aaKnown RBP15.37■□□□□ 0.05
GGA2-201ENST00000309859 DEKP35659 375 aaKnown RBP15.36■□□□□ 0.05
GGA2-201ENST00000309859 ATP1B4Q9UN42 357 aaPredicted RBP15.36■□□□□ 0.05
GGA2-201ENST00000309859 DAXXQ9UER7 740 aaPredicted RBP15.32■□□□□ 0.04
GGA2-201ENST00000309859 CLSPNQ9HAW4 1339 aa15.3■□□□□ 0.04
GGA2-201ENST00000309859 POLR3GLQ9BT43 218 aa15.29■□□□□ 0.04
GGA2-201ENST00000309859 ANO8Q9HCE9 1232 aaPredicted RBP15.28■□□□□ 0.04
GGA2-201ENST00000309859 DDX10Q13206 875 aaKnown RBP15.28■□□□□ 0.04
GGA2-201ENST00000309859 HIRIP3Q9BW71 556 aaPredicted RBP15.24■□□□□ 0.03
GGA2-201ENST00000309859 ANP32CO43423 234 aa15.23■□□□□ 0.03
GGA2-201ENST00000309859 ANP32AP39687 249 aaKnown RBP15.21■□□□□ 0.03
GGA2-201ENST00000309859 HNRNPUQ00839 825 aaKnown RBP eCLIP15.17■□□□□ 0.02
GGA2-201ENST00000309859 ARXQ96QS3 562 aa15.14■□□□□ 0.01
GGA2-201ENST00000309859 KCNH8Q96L42 1107 aa15.13■□□□□ 0.01
GGA2-201ENST00000309859 SENP3-EIF4A1A0A087X0R7 540 aa15.12■□□□□ 0.01
GGA2-201ENST00000309859 MYT1LQ9UL68 1186 aa15.12■□□□□ 0.01
GGA2-201ENST00000309859 ZBTB47Q9UFB7 747 aaPredicted RBP15.11■□□□□ 0.01
GGA2-201ENST00000309859 SALL2Q9Y467 1007 aaPredicted RBP15.08■□□□□ 0
GGA2-201ENST00000309859 LAS1LQ9Y4W2 734 aaKnown RBP15.07■□□□□ 0
GGA2-201ENST00000309859 NOP58Q9Y2X3 529 aaKnown RBP15.02■□□□□ -0
GGA2-201ENST00000309859 FAM9BQ8IZU0 186 aa15.01□□□□□ -0.01
GGA2-201ENST00000309859 B4GALNT3Q6L9W6 998 aa14.99□□□□□ -0.01
GGA2-201ENST00000309859 FAM50AQ14320 339 aaKnown RBP14.97□□□□□ -0.01
GGA2-201ENST00000309859 GLIPR1L2Q4G1C9 344 aa14.95□□□□□ -0.02
GGA2-201ENST00000309859 NEFMP07197 916 aa14.94□□□□□ -0.02
GGA2-201ENST00000309859 IL27Q8NEV9 243 aa14.9□□□□□ -0.02
GGA2-201ENST00000309859 TIMELESSQ9UNS1 1208 aa14.88□□□□□ -0.03
GGA2-201ENST00000309859 MSH5O43196 834 aa14.87□□□□□ -0.03
GGA2-201ENST00000309859 ARID4BQ4LE39 1312 aaPredicted RBP14.86□□□□□ -0.03
GGA2-201ENST00000309859 NAP1L5Q96NT1 182 aaPredicted RBP14.76□□□□□ -0.05
GGA2-201ENST00000309859 PPP4R2Q9NY27 417 aa14.75□□□□□ -0.05
GGA2-201ENST00000309859 ZNF326Q5BKZ1 582 aaKnown RBP14.73□□□□□ -0.05
GGA2-201ENST00000309859 CEP162Q5TB80 1403 aa14.72□□□□□ -0.05
GGA2-201ENST00000309859 MRS2Q9HD23 443 aa14.72□□□□□ -0.05
GGA2-201ENST00000309859 VSIG10Q8N0Z9 540 aa14.71□□□□□ -0.05
GGA2-201ENST00000309859 SIN3AQ96ST3 1273 aa14.7□□□□□ -0.06
GGA2-201ENST00000309859 PAK3O75914 559 aaPredicted RBP14.68□□□□□ -0.06
GGA2-201ENST00000309859 ERICH6BQ5W0A0 696 aa14.68□□□□□ -0.06
GGA2-201ENST00000309859 FANCIQ9NVI1 1328 aa14.67□□□□□ -0.06
GGA2-201ENST00000309859 PKNOX2Q96KN3 472 aa14.66□□□□□ -0.06
GGA2-201ENST00000309859 ZCCHC6Q5VYS8 1495 aaKnown RBP14.63□□□□□ -0.07
GGA2-201ENST00000309859 BAZ1BQ9UIG0 1483 aaKnown RBP14.63□□□□□ -0.07
GGA2-201ENST00000309859 ARID3AQ99856 593 aa14.62□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms