RNA–Protein interactions for RNA: ENST00000241704.7

COPA-201, Transcript of coatomer protein complex subunit alpha, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COPA, Length 4,789 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPA-201ENST00000241704 NISCHQ9Y2I1 1504 aa20.15■□□□□ 0.82
COPA-201ENST00000241704 DCAF8L2P0C7V8 631 aa19.65■□□□□ 0.74
COPA-201ENST00000241704 SUPT5HO00267 1087 aaKnown RBP18.36■□□□□ 0.53
COPA-201ENST00000241704 SHROOM4Q9ULL8 1493 aa18.34■□□□□ 0.53
COPA-201ENST00000241704 PELP1Q8IZL8 1130 aaKnown RBP18■□□□□ 0.47
COPA-201ENST00000241704 MYT1Q01538 1121 aa17.62■□□□□ 0.41
COPA-201ENST00000241704 HRCP23327 699 aa17.55■□□□□ 0.4
COPA-201ENST00000241704 EHMT2Q96KQ7 1210 aa17.45■□□□□ 0.38
COPA-201ENST00000241704 PCGF6Q9BYE7 350 aa17.36■□□□□ 0.37
COPA-201ENST00000241704 FAM9AQ8IZU1 332 aaPredicted RBP17.2■□□□□ 0.34
COPA-201ENST00000241704 APLP2Q06481 763 aa17.13■□□□□ 0.33
COPA-201ENST00000241704 TRIM41Q8WV44 630 aa17.12■□□□□ 0.33
COPA-201ENST00000241704 PPARGC1BQ86YN6 1023 aaKnown RBP17.07■□□□□ 0.32
COPA-201ENST00000241704 ABCC9O60706 1549 aa17.03■□□□□ 0.32
COPA-201ENST00000241704 ZEB1P37275 1124 aaPredicted RBP16.98■□□□□ 0.31
COPA-201ENST00000241704 RANGAP1P46060 587 aaPredicted RBP16.89■□□□□ 0.3
COPA-201ENST00000241704 CENPBP07199 599 aaPredicted RBP16.82■□□□□ 0.28
COPA-201ENST00000241704 CCDC180Q9P1Z9 1646 aa16.8■□□□□ 0.28
COPA-201ENST00000241704 ATP1B4Q9UN42 357 aaPredicted RBP16.78■□□□□ 0.28
COPA-201ENST00000241704 CHIC1Q5VXU3 224 aa16.77■□□□□ 0.28
COPA-201ENST00000241704 ZCCHC6Q5VYS8 1495 aaKnown RBP16.76■□□□□ 0.27
COPA-201ENST00000241704 TTBK1Q5TCY1 1321 aaPredicted RBP16.75■□□□□ 0.27
COPA-201ENST00000241704 UBTFP17480 764 aaKnown RBP16.72■□□□□ 0.27
COPA-201ENST00000241704 TRIM26Q12899 539 aaPredicted RBP16.68■□□□□ 0.26
COPA-201ENST00000241704 PABPN1Q86U42 306 aaKnown RBP eCLIP16.67■□□□□ 0.269e-7■□□□□ 11
COPA-201ENST00000241704 SCAF1Q9H7N4 1312 aaKnown RBP16.59■□□□□ 0.25
COPA-201ENST00000241704 LOC105371045A0A1W2PR82 267 aa16.5■□□□□ 0.23
COPA-201ENST00000241704 ACIN1Q9UKV3 1341 aaKnown RBP16.42■□□□□ 0.22
COPA-201ENST00000241704 GTF3C3Q9Y5Q9 886 aa16.41■□□□□ 0.22
COPA-201ENST00000241704 SCRIBQ14160 1630 aa16.4■□□□□ 0.22
COPA-201ENST00000241704 CCER1Q8TC90 406 aaPredicted RBP16.39■□□□□ 0.21
COPA-201ENST00000241704 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.37■□□□□ 0.21
COPA-201ENST00000241704 HNRNPUL2Q1KMD3 747 aaKnown RBP16.37■□□□□ 0.21
COPA-201ENST00000241704 MYT1LQ9UL68 1186 aa16.31■□□□□ 0.2
COPA-201ENST00000241704 DCAF1Q9Y4B6 1507 aa16.25■□□□□ 0.19
COPA-201ENST00000241704 YTHDC1Q96MU7 727 aaKnown RBP16.23■□□□□ 0.19
COPA-201ENST00000241704 RB1CC1Q8TDY2 1594 aa16.19■□□□□ 0.18
COPA-201ENST00000241704 NEUROD1Q13562 356 aa16.18■□□□□ 0.18
COPA-201ENST00000241704 DIEXFQ68CQ4 756 aaKnown RBP16.18■□□□□ 0.18
COPA-201ENST00000241704 NACADO15069 1562 aa16.17■□□□□ 0.18
COPA-201ENST00000241704 MYO15BQ96JP2 1530 aa16.1■□□□□ 0.17
COPA-201ENST00000241704 FBLN2P98095 1184 aa16.06■□□□□ 0.16
COPA-201ENST00000241704 ITGAEP38570 1179 aa16.03■□□□□ 0.16
COPA-201ENST00000241704 RSF1Q96T23 1441 aaPredicted RBP16.01■□□□□ 0.15
COPA-201ENST00000241704 CSRNP3Q8WYN3 585 aa16■□□□□ 0.15
COPA-201ENST00000241704 ERICH6Q7L0X2 663 aa15.94■□□□□ 0.14
COPA-201ENST00000241704 BCL11AQ9H165 835 aa15.81■□□□□ 0.12
COPA-201ENST00000241704 BAZ1AQ9NRL2 1556 aaPredicted RBP15.76■□□□□ 0.11
COPA-201ENST00000241704 CECR2Q9BXF3 1484 aa15.76■□□□□ 0.11
COPA-201ENST00000241704 ZNF316A6NFI3 1004 aaPredicted RBP15.75■□□□□ 0.11
COPA-201ENST00000241704 FAM50AQ14320 339 aaKnown RBP15.74■□□□□ 0.11
COPA-201ENST00000241704 ANP32EQ9BTT0 268 aa15.74■□□□□ 0.11
COPA-201ENST00000241704 POLR3GLQ9BT43 218 aa15.72■□□□□ 0.11
COPA-201ENST00000241704 CLSPNQ9HAW4 1339 aa15.72■□□□□ 0.11
COPA-201ENST00000241704 NEFLP07196 543 aa15.72■□□□□ 0.11
COPA-201ENST00000241704 BAZ1BQ9UIG0 1483 aaKnown RBP15.69■□□□□ 0.1
COPA-201ENST00000241704 P3H3Q8IVL6 736 aa15.66■□□□□ 0.1
COPA-201ENST00000241704 ARID3CA6NKF2 412 aa15.62■□□□□ 0.09
COPA-201ENST00000241704 WRNQ14191 1432 aaPredicted RBP eCLIP15.59■□□□□ 0.09
COPA-201ENST00000241704 EEA1Q15075 1411 aa15.59■□□□□ 0.09
COPA-201ENST00000241704 TRIM52Q96A61 297 aa15.59■□□□□ 0.09
COPA-201ENST00000241704 MROH2BQ7Z745 1585 aa15.58■□□□□ 0.09
COPA-201ENST00000241704 SLC4A1APQ9BWU0 796 aaKnown RBP15.58■□□□□ 0.08
COPA-201ENST00000241704 NPM1P06748 294 aaKnown RBP eCLIP15.56■□□□□ 0.08
COPA-201ENST00000241704 CNGB1Q14028 1251 aaPredicted RBP15.52■□□□□ 0.07
COPA-201ENST00000241704 CDK11AQ9UQ88 783 aaPredicted RBP15.49■□□□□ 0.07
COPA-201ENST00000241704 MIER1Q8N108 512 aa15.47■□□□□ 0.07
COPA-201ENST00000241704 CLIP1P30622 1438 aa15.46■□□□□ 0.06
COPA-201ENST00000241704 BCANQ96GW7 911 aa15.45■□□□□ 0.06
COPA-201ENST00000241704 GOLGA3Q08378 1498 aa15.45■□□□□ 0.06
COPA-201ENST00000241704 ZNF777Q9ULD5 760 aaPredicted RBP15.45■□□□□ 0.06
COPA-201ENST00000241704 CCDC88BA6NC98 1476 aa15.43■□□□□ 0.06
COPA-201ENST00000241704 CHMP7Q8WUX9 453 aaPredicted RBP15.42■□□□□ 0.06
COPA-201ENST00000241704 ESF1Q9H501 851 aaKnown RBP15.42■□□□□ 0.06
COPA-201ENST00000241704 KIF27Q86VH2 1401 aa15.4■□□□□ 0.06
COPA-201ENST00000241704 SMARCA2P51531 1590 aa15.4■□□□□ 0.06
COPA-201ENST00000241704 CEP162Q5TB80 1403 aa15.39■□□□□ 0.05
COPA-201ENST00000241704 TNIKQ9UKE5 1360 aa15.38■□□□□ 0.05
COPA-201ENST00000241704 CEP164Q9UPV0 1460 aa15.36■□□□□ 0.05
COPA-201ENST00000241704 ZNF326Q5BKZ1 582 aaKnown RBP15.36■□□□□ 0.05
COPA-201ENST00000241704 SUPT16HQ9Y5B9 1047 aaKnown RBP15.36■□□□□ 0.05
COPA-201ENST00000241704 WIZO95785 1651 aa15.34■□□□□ 0.05
COPA-201ENST00000241704 TOP2AP11388 1531 aaKnown RBP15.33■□□□□ 0.05
COPA-201ENST00000241704 PLPPR3Q6T4P5 718 aa15.31■□□□□ 0.04
COPA-201ENST00000241704 TSHZ2Q9NRE2 1034 aa15.29■□□□□ 0.04
COPA-201ENST00000241704 SOGA1O94964 1423 aa15.28■□□□□ 0.04
COPA-201ENST00000241704 FKBP8Q14318 412 aa15.26■□□□□ 0.03
COPA-201ENST00000241704 RTL5Q5HYW3 569 aaPredicted RBP15.26■□□□□ 0.03
COPA-201ENST00000241704 MTUS2Q5JR59 1369 aa15.25■□□□□ 0.03
COPA-201ENST00000241704 SMARCA4P51532 1647 aa15.25■□□□□ 0.03
COPA-201ENST00000241704 ATAD2BQ9ULI0 1458 aa15.25■□□□□ 0.03
COPA-201ENST00000241704 ERCC6Q03468 1493 aa15.24■□□□□ 0.03
COPA-201ENST00000241704 ABCC8Q09428 1581 aa15.23■□□□□ 0.03
COPA-201ENST00000241704 STAG3Q9UJ98 1225 aa15.22■□□□□ 0.03
COPA-201ENST00000241704 CUX2O14529 1486 aa15.19■□□□□ 0.02
COPA-201ENST00000241704 CHGAP10645 457 aaKnown RBP15.18■□□□□ 0.02
COPA-201ENST00000241704 PRKCSHP14314 528 aaPredicted RBP15.18■□□□□ 0.02
COPA-201ENST00000241704 CARMIL1Q5VZK9 1371 aa15.17■□□□□ 0.02
COPA-201ENST00000241704 ANP32CO43423 234 aa15.16■□□□□ 0.02
COPA-201ENST00000241704 CHIC2Q9UKJ5 165 aa15.14■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms