Protein–RNA interactions for Protein: P23396

RPS3, 40S ribosomal protein S3, humanhuman

Known RBP eCLIP

Length 243 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPS3P23396 SCAMP3-209ENST00000497470 845 ntTSL 519.58■□□□□ 0.722e-9■■■□□ 16
RPS3P23396 SCAMP3-204ENST00000465312 715 ntTSL 518.15■□□□□ 0.52e-9■■■□□ 16
RPS3P23396 SCAMP3-207ENST00000480219 752 ntTSL 216.71■□□□□ 0.272e-9■■■□□ 16
RPS3P23396 TF-207ENST00000467842 4602 ntTSL 1 (best)7.06□□□□□ -1.281e-33■■■□□ 16
RPS3P23396 SDCBP-209ENST00000522243 556 ntTSL 519.93■□□□□ 0.782e-6■■■□□ 16
RPS3P23396 SDCBP-210ENST00000522843 764 ntTSL 25.99□□□□□ -1.452e-6■■■□□ 16
RPS3P23396 STIP1-211ENST00000543847 772 ntTSL 1 (best) BASIC10.51□□□□□ -0.732e-7■■■□□ 16
RPS3P23396 AC092073.1-201ENST00000592740 625 ntAPPRIS P1 TSL 317■□□□□ 0.316e-10■■■□□ 16
RPS3P23396 CYP51A1-203ENST00000435873 556 ntTSL 43.12□□□□□ -1.912e-15■■■□□ 16
RPS3P23396 KIF22-209ENST00000569636 834 ntTSL 515.45■□□□□ 0.062e-7■■■□□ 16
RPS3P23396 CCT3-212ENST00000478640 583 ntTSL 210.83□□□□□ -0.688e-7■■■□□ 16
RPS3P23396 CCT3-208ENST00000415548 513 ntTSL 38.14□□□□□ -1.118e-7■■■□□ 16
RPS3P23396 CCT3-209ENST00000446905 593 ntTSL 34.74□□□□□ -1.658e-7■■■□□ 16
RPS3P23396 CCT3-210ENST00000463132 610 ntTSL 33.25□□□□□ -1.898e-7■■■□□ 16
RPS3P23396 KRT8-208ENST00000547031 883 ntTSL 215.72■□□□□ 0.113e-7■■■□□ 16
RPS3P23396 PCMT1-207ENST00000484601 1095 ntTSL 517.45■□□□□ 0.385e-7■■■□□ 16
RPS3P23396 PCMT1-208ENST00000486585 801 ntTSL 39.33□□□□□ -0.925e-7■■■□□ 16
RPS3P23396 WFS1-203ENST00000506362 755 ntAPPRIS ALT2 TSL 313.46□□□□□ -0.255e-8■■■□□ 16
RPS3P23396 P4HB-204ENST00000466567 872 ntTSL 220.3■□□□□ 0.841e-30■■■□□ 16
RPS3P23396 EIF3L-211ENST00000476955 583 ntTSL 58.43□□□□□ -1.064e-6■■■□□ 16
RPS3P23396 EIF3L-206ENST00000439997 787 ntTSL 56.05□□□□□ -1.444e-6■■■□□ 16
RPS3P23396 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC19.18■□□□□ 0.662e-6■■■□□ 16
RPS3P23396 SLC6A6-203ENST00000610642 1983 ntTSL 218.76■□□□□ 0.592e-6■■■□□ 16
RPS3P23396 SLC6A6-209ENST00000622176 1116 ntTSL 1 (best)17.2■□□□□ 0.342e-6■■■□□ 16
RPS3P23396 SLC6A6-206ENST00000615188 689 ntTSL 316.2■□□□□ 0.182e-6■■■□□ 16
RPS3P23396 SLC6A6-210ENST00000622186 6528 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.522e-6■■■□□ 16
RPS3P23396 SLC6A6-204ENST00000613060 6526 ntTSL 1 (best) BASIC11.81□□□□□ -0.522e-6■■■□□ 16
RPS3P23396 SLC6A6-207ENST00000618278 6401 ntTSL 510.88□□□□□ -0.672e-6■■■□□ 16
RPS3P23396 CNP-205ENST00000486438 911 ntTSL 219.29■□□□□ 0.686e-10■■■□□ 16
RPS3P23396 RPL4-216ENST00000569438 565 ntTSL 513.78□□□□□ -0.24e-11■■■□□ 16
RPS3P23396 RPL4-212ENST00000566622 817 ntTSL 213.03□□□□□ -0.324e-11■■■□□ 16
RPS3P23396 RPL4-211ENST00000566491 593 ntTSL 212.5□□□□□ -0.414e-11■■■□□ 16
RPS3P23396 RPL4-214ENST00000567229 2003 ntTSL 511.61□□□□□ -0.554e-11■■■□□ 16
RPS3P23396 RPL4-215ENST00000568588 1864 ntTSL 2 BASIC11□□□□□ -0.654e-11■■■□□ 16
RPS3P23396 RPL4-205ENST00000564439 582 ntTSL 310.52□□□□□ -0.734e-11■■■□□ 16
RPS3P23396 RPL4-201ENST00000307961 2769 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.734e-11■■■□□ 16
RPS3P23396 RPL4-202ENST00000561554 580 ntTSL 410.18□□□□□ -0.784e-11■■■□□ 16
RPS3P23396 RPL4-217ENST00000569696 569 ntTSL 59.86□□□□□ -0.834e-11■■■□□ 16
RPS3P23396 RPL4-213ENST00000566624 819 ntTSL 29.86□□□□□ -0.834e-11■■■□□ 16
RPS3P23396 RPL4-210ENST00000566039 1099 ntTSL 28.44□□□□□ -1.064e-11■■■□□ 16
RPS3P23396 RPL4-203ENST00000561775 1396 ntTSL 57.65□□□□□ -1.184e-11■■■□□ 16
RPS3P23396 CADM1-220ENST00000546000 734 ntTSL 1 (best)16.79■□□□□ 0.283e-10■■■□□ 16
RPS3P23396 CADM1-219ENST00000545960 630 ntTSL 515.32■□□□□ 0.043e-10■■■□□ 16
RPS3P23396 CADM1-209ENST00000540852 476 ntTSL 214.63□□□□□ -0.073e-10■■■□□ 16
RPS3P23396 CADM1-215ENST00000543375 668 ntTSL 311.6□□□□□ -0.553e-10■■■□□ 16
RPS3P23396 SAP18-201ENST00000382533 2298 ntAPPRIS P2 TSL 1 (best) BASIC13.22□□□□□ -0.295e-7■■■□□ 16
RPS3P23396 SAP18-208ENST00000621421 2300 ntAPPRIS P2 TSL 1 (best) BASIC12.77□□□□□ -0.365e-7■■■□□ 16
RPS3P23396 SAP18-207ENST00000607003 2234 ntAPPRIS ALT1 TSL 1 (best) BASIC7.3□□□□□ -1.245e-7■■■□□ 16
RPS3P23396 SAP18-206ENST00000492245 405 ntTSL 46.03□□□□□ -1.445e-7■■■□□ 16
RPS3P23396 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC20.45■□□□□ 0.863e-13■■■□□ 16
RPS3P23396 GART-201ENST00000361093 2149 ntTSL 1 (best) BASIC8.18□□□□□ -1.17e-7■■■□□ 16
RPS3P23396 ACLY-210ENST00000592970 540 ntTSL 49.76□□□□□ -0.855e-10■■■□□ 16
RPS3P23396 SNRNP200-201ENST00000323853 7165 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.748e-7■■■□□ 16
RPS3P23396 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC25.54■■□□□ 1.681e-6■■■□□ 16
RPS3P23396 NPC2-208ENST00000556009 699 ntTSL 516.95■□□□□ 0.31e-6■■■□□ 16
RPS3P23396 NPC2-202ENST00000434013 875 ntTSL 2 BASIC10.71□□□□□ -0.691e-6■■■□□ 16
RPS3P23396 NPC2-205ENST00000554482 583 ntTSL 210.63□□□□□ -0.711e-6■■■□□ 16
RPS3P23396 NPC2-203ENST00000541064 1436 ntTSL 2 BASIC8.89□□□□□ -0.991e-6■■■□□ 16
RPS3P23396 NPC2-201ENST00000238633 796 ntAPPRIS ALT1 TSL 3 BASIC8.64□□□□□ -1.031e-6■■■□□ 16
RPS3P23396 NPC2-209ENST00000557510 1029 ntTSL 1 (best) BASIC8.61□□□□□ -1.031e-6■■■□□ 16
RPS3P23396 NPC2-204ENST00000553490 729 ntTSL 27.92□□□□□ -1.141e-6■■■□□ 16
RPS3P23396 GLDC-221ENST00000640592 2828 ntTSL 57.71□□□□□ -1.182e-6■■■□□ 16
RPS3P23396 GLDC-212ENST00000639364 3298 ntTSL 57.67□□□□□ -1.182e-6■■■□□ 16
RPS3P23396 GLDC-218ENST00000639954 3279 ntTSL 56.98□□□□□ -1.292e-6■■■□□ 16
RPS3P23396 SAT1-206ENST00000463236 735 ntTSL 36.16□□□□□ -1.422e-19■■■□□ 16
RPS3P23396 HAX1-206ENST00000471326 1170 ntTSL 210.86□□□□□ -0.674e-11■■■□□ 16
RPS3P23396 SPARC-203ENST00000521327 864 ntTSL 212.81□□□□□ -0.368e-7■■■□□ 16
RPS3P23396 SPARC-209ENST00000539687 511 ntTSL 510.14□□□□□ -0.798e-7■■■□□ 16
RPS3P23396 SUN2-205ENST00000420859 538 ntTSL 517.19■□□□□ 0.341e-6■■■□□ 16
RPS3P23396 CYP51A1-201ENST00000003100 3210 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 04e-7■■■□□ 16
RPS3P23396 LRRD1-202ENST00000422722 3511 ntTSL 211.95□□□□□ -0.54e-7■■■□□ 16
RPS3P23396 CYP51A1-204ENST00000450723 1729 ntTSL 2 BASIC6.64□□□□□ -1.354e-7■■■□□ 16
RPS3P23396 SLC3A2-209ENST00000537508 583 ntTSL 29.1□□□□□ -0.954e-7■■■□□ 16
RPS3P23396 CCT3-207ENST00000413555 842 ntTSL 55.83□□□□□ -1.488e-7■■■□□ 16
RPS3P23396 PKM-206ENST00000562784 529 ntTSL 210.71□□□□□ -0.692e-14■■■□□ 16
RPS3P23396 POR-220ENST00000475509 590 ntTSL 510.25□□□□□ -0.772e-13■■■□□ 15.9
RPS3P23396 PFKL-203ENST00000460020 890 ntTSL 522.1■■□□□ 1.132e-6■■■□□ 15.9
RPS3P23396 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.761e-9■■■□□ 15.9
RPS3P23396 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC16.73■□□□□ 0.271e-9■■■□□ 15.9
RPS3P23396 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC15.97■□□□□ 0.151e-9■■■□□ 15.9
RPS3P23396 MRFAP1-204ENST00000512914 1982 nt15.7■□□□□ 0.11e-9■■■□□ 15.9
RPS3P23396 MRFAP1-202ENST00000382581 1584 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.151e-9■■■□□ 15.9
RPS3P23396 EML2-217ENST00000588496 669 ntTSL 318.31■□□□□ 0.521e-7■■■□□ 15.9
RPS3P23396 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC14.99□□□□□ -0.017e-12■■■□□ 15.9
RPS3P23396 TNS3-208ENST00000457718 3836 ntTSL 510.41□□□□□ -0.748e-7■■■□□ 15.9
RPS3P23396 GAA-205ENST00000572080 723 ntTSL 316.29■□□□□ 0.21e-6■■■□□ 15.9
RPS3P23396 PPP1CA-207ENST00000532279 552 ntTSL 322.15■■□□□ 1.143e-12■■■□□ 15.9
RPS3P23396 PPP1CA-204ENST00000526510 1677 ntTSL 1 (best)19.69■□□□□ 0.743e-12■■■□□ 15.9
RPS3P23396 PPP1CA-208ENST00000532446 1465 ntTSL 517.77■□□□□ 0.443e-12■■■□□ 15.9
RPS3P23396 LBR-207ENST00000487054 731 ntTSL 39.88□□□□□ -0.833e-12■■■□□ 15.9
RPS3P23396 CRLF1-205ENST00000597131 520 ntTSL 222.17■■□□□ 1.141e-15■■■□□ 15.9
RPS3P23396 CEACAM1-204ENST00000358394 1484 ntTSL 1 (best) BASIC8.47□□□□□ -1.051e-6■■■□□ 15.9
RPS3P23396 CEACAM1-213ENST00000599389 1342 ntTSL 5 BASIC6.43□□□□□ -1.381e-6■■■□□ 15.9
RPS3P23396 CEACAM1-203ENST00000352591 3170 ntTSL 1 (best) BASIC6.34□□□□□ -1.391e-6■■■□□ 15.9
RPS3P23396 CEACAM1-207ENST00000403444 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC6.15□□□□□ -1.421e-6■■■□□ 15.9
RPS3P23396 CEACAM1-201ENST00000161559 3519 ntAPPRIS P3 TSL 1 (best) BASIC5.54□□□□□ -1.521e-6■■■□□ 15.9
RPS3P23396 APOA2-208ENST00000481413 927 ntTSL 214.97□□□□□ -0.015e-51■■■□□ 15.9
RPS3P23396 APOA2-204ENST00000464492 530 ntTSL 3 BASIC14.29□□□□□ -0.125e-51■■■□□ 15.9
RPS3P23396 APOA2-209ENST00000481511 655 ntTSL 512.01□□□□□ -0.495e-51■■■□□ 15.9
RPS3P23396 APOA2-203ENST00000463812 401 ntTSL 2 BASIC9.05□□□□□ -0.965e-51■■■□□ 15.9
Retrieved 100 of 24,271 protein–RNA pairs in 361 ms