RNA–Protein interactions for RNA: ENST00000522843.5

SDCBP-210, Transcript of syndecan binding protein, humanhuman

TSL 2

Gene SDCBP, Length 764 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-210ENST00000522843 AEBP2Q6ZN18 517 aaPredicted RBP31.36■■■□□ 2.61
SDCBP-210ENST00000522843 CHIC1Q5VXU3 224 aa29.62■■■□□ 2.33
SDCBP-210ENST00000522843 SENP3Q9H4L4 574 aaPredicted RBP26.82■■□□□ 1.88
SDCBP-210ENST00000522843 PHF23Q9BUL5 403 aaPredicted RBP26.44■■□□□ 1.82
SDCBP-210ENST00000522843 FOXD1Q16676 465 aa25■■□□□ 1.59
SDCBP-210ENST00000522843 PLPPR3Q6T4P5 718 aa23.61■■□□□ 1.37
SDCBP-210ENST00000522843 MSH5O43196 834 aa23.49■■□□□ 1.35
SDCBP-210ENST00000522843 PIAS4Q8N2W9 510 aaPredicted RBP23.32■■□□□ 1.32
SDCBP-210ENST00000522843 PPP6R1Q9UPN7 881 aa23.23■■□□□ 1.31
SDCBP-210ENST00000522843 POTEDQ86YR6 584 aa23.21■■□□□ 1.31
SDCBP-210ENST00000522843 ADRA2BP18089 450 aa23.15■■□□□ 1.3
SDCBP-210ENST00000522843 MAPK8IP2Q13387 824 aaPredicted RBP21.32■■□□□ 1
SDCBP-210ENST00000522843 SCAF1Q9H7N4 1312 aaKnown RBP21.24■□□□□ 0.99
SDCBP-210ENST00000522843 DMRT2Q9Y5R5 561 aa21.23■□□□□ 0.99
SDCBP-210ENST00000522843 PPP4R3CPQ6ZMV5 832 aa20.66■□□□□ 0.9
SDCBP-210ENST00000522843 HOXD11P31277 338 aaPredicted RBP20.38■□□□□ 0.85
SDCBP-210ENST00000522843 DCAF8L1A6NGE4 600 aa20.37■□□□□ 0.85
SDCBP-210ENST00000522843 CNKSR2Q8WXI2 1034 aa20.32■□□□□ 0.84
SDCBP-210ENST00000522843 CACNB1Q02641 598 aaPredicted RBP20.26■□□□□ 0.83
SDCBP-210ENST00000522843 RNF216Q9NWF9 866 aaPredicted RBP20.19■□□□□ 0.82
SDCBP-210ENST00000522843 RNF39Q9H2S5 420 aa20.01■□□□□ 0.79
SDCBP-210ENST00000522843 NCBP3Q53F19 620 aaKnown RBP19.84■□□□□ 0.77
SDCBP-210ENST00000522843 C1QBPQ07021 282 aaKnown RBP19.74■□□□□ 0.75
SDCBP-210ENST00000522843 DNAJC5BQ9UF47 199 aa19.74■□□□□ 0.75
SDCBP-210ENST00000522843 NPM3O75607 178 aaKnown RBP19.52■□□□□ 0.72
SDCBP-210ENST00000522843 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.43■□□□□ 0.7
SDCBP-210ENST00000522843 KCNA4P22459 653 aa18.97■□□□□ 0.63
SDCBP-210ENST00000522843 U3KPZ7 1027 aaPredicted RBP18.97■□□□□ 0.63
SDCBP-210ENST00000522843 CAPN15O75808 1086 aa18.75■□□□□ 0.59
SDCBP-210ENST00000522843 SPINK5Q9NQ38 1064 aaPredicted RBP18.75■□□□□ 0.59
SDCBP-210ENST00000522843 SLC4A2P04920 1241 aa18.68■□□□□ 0.58
SDCBP-210ENST00000522843 DSG3P32926 999 aa18.68■□□□□ 0.58
SDCBP-210ENST00000522843 APLP2Q06481 763 aa18.47■□□□□ 0.55
SDCBP-210ENST00000522843 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.41■□□□□ 0.54
SDCBP-210ENST00000522843 HNRNPUL2Q1KMD3 747 aaKnown RBP18.41■□□□□ 0.54
SDCBP-210ENST00000522843 TRHP20396 242 aaPredicted RBP18.4■□□□□ 0.54
SDCBP-210ENST00000522843 ZNF219Q9P2Y4 722 aaPredicted RBP18.36■□□□□ 0.53
SDCBP-210ENST00000522843 SAMD1Q6SPF0 538 aaPredicted RBP18.29■□□□□ 0.52
SDCBP-210ENST00000522843 ABCB7O75027 752 aa18.27■□□□□ 0.52
SDCBP-210ENST00000522843 POTEHQ6S545 545 aa18.16■□□□□ 0.5
SDCBP-210ENST00000522843 MYCNP04198 464 aaPredicted RBP18.06■□□□□ 0.48
SDCBP-210ENST00000522843 POLA2Q14181 598 aa17.88■□□□□ 0.45
SDCBP-210ENST00000522843 SLC4A1APQ9BWU0 796 aaKnown RBP17.88■□□□□ 0.45
SDCBP-210ENST00000522843 RBM42Q9BTD8 480 aaKnown RBP17.85■□□□□ 0.45
SDCBP-210ENST00000522843 FOXD4L1Q9NU39 408 aa17.77■□□□□ 0.44
SDCBP-210ENST00000522843 ATF5Q9Y2D1 282 aaPredicted RBP17.64■□□□□ 0.41
SDCBP-210ENST00000522843 CHRDL2Q6WN34 429 aa17.51■□□□□ 0.39
SDCBP-210ENST00000522843 ZBTB12Q9Y330 459 aaPredicted RBP17.5■□□□□ 0.39
SDCBP-210ENST00000522843 ZBTB22O15209 634 aa17.41■□□□□ 0.38
SDCBP-210ENST00000522843 AKT1S1Q96B36 256 aa17.4■□□□□ 0.38
SDCBP-210ENST00000522843 NISCHQ9Y2I1 1504 aa17.29■□□□□ 0.36
SDCBP-210ENST00000522843 OSCARQ8IYS5 282 aa17.28■□□□□ 0.36
SDCBP-210ENST00000522843 ATXN8OSP0DMR3 200 aa17.27■□□□□ 0.36
SDCBP-210ENST00000522843 REM2Q8IYK8 340 aaPredicted RBP17.22■□□□□ 0.35
SDCBP-210ENST00000522843 PIP4P2Q8N4L2 257 aa17.05■□□□□ 0.32
SDCBP-210ENST00000522843 PITPNM1O00562 1244 aa17.02■□□□□ 0.32
SDCBP-210ENST00000522843 FBLN2P98095 1184 aa17■□□□□ 0.31
SDCBP-210ENST00000522843 SPDYE2BA6NHP3 402 aa16.94■□□□□ 0.3
SDCBP-210ENST00000522843 SPDYE6P0CI01 402 aa16.94■□□□□ 0.3
SDCBP-210ENST00000522843 SPDYE2Q495Y8 402 aa16.94■□□□□ 0.3
SDCBP-210ENST00000522843 SP7Q8TDD2 431 aaPredicted RBP16.94■□□□□ 0.3
SDCBP-210ENST00000522843 FXR2P51116 673 aaKnown RBP eCLIP16.93■□□□□ 0.3
SDCBP-210ENST00000522843 HAX1O00165 279 aa16.82■□□□□ 0.28
SDCBP-210ENST00000522843 MKRN4PQ13434 485 aaPredicted RBP16.82■□□□□ 0.28
SDCBP-210ENST00000522843 ZNF692Q9BU19 519 aaPredicted RBP16.72■□□□□ 0.27
SDCBP-210ENST00000522843 SPDYE1Q8NFV5 336 aaPredicted RBP16.7■□□□□ 0.26
SDCBP-210ENST00000522843 CLEC11AQ9Y240 323 aa16.68■□□□□ 0.26
SDCBP-210ENST00000522843 SSUH2Q9Y2M2 353 aa16.68■□□□□ 0.26
SDCBP-210ENST00000522843 PRKAR2AP13861 404 aaKnown RBP16.6■□□□□ 0.25
SDCBP-210ENST00000522843 EVX2Q03828 476 aa16.57■□□□□ 0.24
SDCBP-210ENST00000522843 CSRNP3Q8WYN3 585 aa16.48■□□□□ 0.23
SDCBP-210ENST00000522843 PABPN1Q86U42 306 aaKnown RBP eCLIP16.46■□□□□ 0.23
SDCBP-210ENST00000522843 C19orf67A6NJJ6 358 aa16.39■□□□□ 0.21
SDCBP-210ENST00000522843 PRR29P0C7W0 189 aa16.39■□□□□ 0.21
SDCBP-210ENST00000522843 CHADLQ6NUI6 762 aa16.35■□□□□ 0.21
SDCBP-210ENST00000522843 GABBR2O75899 941 aa16.2■□□□□ 0.18
SDCBP-210ENST00000522843 ABCC9O60706 1549 aa16.17■□□□□ 0.18
SDCBP-210ENST00000522843 EHMT2Q96KQ7 1210 aa16.14■□□□□ 0.17
SDCBP-210ENST00000522843 FARP1Q9Y4F1 1045 aaPredicted RBP16.12■□□□□ 0.17
SDCBP-210ENST00000522843 CD44P16070 742 aaKnown RBP16.06■□□□□ 0.16
SDCBP-210ENST00000522843 STAG3Q9UJ98 1225 aa16■□□□□ 0.15
SDCBP-210ENST00000522843 SPDYE4A6NLX3 237 aa15.96■□□□□ 0.15
SDCBP-210ENST00000522843 CLCN6P51797 869 aa15.93■□□□□ 0.14
SDCBP-210ENST00000522843 CREBZFQ9NS37 354 aa15.91■□□□□ 0.14
SDCBP-210ENST00000522843 LHX8Q68G74 356 aa15.9■□□□□ 0.14
SDCBP-210ENST00000522843 POTEIP0CG38 1075 aa15.83■□□□□ 0.12
SDCBP-210ENST00000522843 ZRANB1Q9UGI0 708 aa15.81■□□□□ 0.12
SDCBP-210ENST00000522843 ZNF579Q8NAF0 562 aaKnown RBP15.8■□□□□ 0.12
SDCBP-210ENST00000522843 DCBLD2Q96PD2 775 aa15.74■□□□□ 0.11
SDCBP-210ENST00000522843 CCDC180Q9P1Z9 1646 aa15.67■□□□□ 0.1
SDCBP-210ENST00000522843 PAK3O75914 559 aaPredicted RBP15.66■□□□□ 0.1
SDCBP-210ENST00000522843 NPM1P06748 294 aaKnown RBP eCLIP15.65■□□□□ 0.1
SDCBP-210ENST00000522843 GALR2O43603 387 aaPredicted RBP15.61■□□□□ 0.09
SDCBP-210ENST00000522843 MNX1P50219 401 aaPredicted RBP15.61■□□□□ 0.09
SDCBP-210ENST00000522843 PHF12Q96QT6 1004 aa15.55■□□□□ 0.08
SDCBP-210ENST00000522843 PROM2Q8N271 834 aa15.53■□□□□ 0.08
SDCBP-210ENST00000522843 TSPYL2Q9H2G4 693 aaPredicted RBP15.34■□□□□ 0.05
SDCBP-210ENST00000522843 PELP1Q8IZL8 1130 aaKnown RBP15.33■□□□□ 0.04
SDCBP-210ENST00000522843 MS4A3Q96HJ5 214 aa15.33■□□□□ 0.04
SDCBP-210ENST00000522843 POTEB2H3BUK9 544 aa15.32■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms