RNA–Protein interactions for RNA: ENST00000497470.1

SCAMP3-209, Transcript of secretory carrier membrane protein 3, humanhuman

TSL 5

Gene SCAMP3, Length 845 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAMP3-209ENST00000497470 NISCHQ9Y2I1 1504 aa46.73■■■■■ 5.07
SCAMP3-209ENST00000497470 CCDC180Q9P1Z9 1646 aa41.29■■■■■ 4.2
SCAMP3-209ENST00000497470 ABCC9O60706 1549 aa39.45■■■■□ 3.91
SCAMP3-209ENST00000497470 ZCCHC6Q5VYS8 1495 aaKnown RBP39.09■■■■□ 3.85
SCAMP3-209ENST00000497470 DCAF1Q9Y4B6 1507 aa38.89■■■■□ 3.82
SCAMP3-209ENST00000497470 MYO15BQ96JP2 1530 aa38.85■■■■□ 3.81
SCAMP3-209ENST00000497470 NACADO15069 1562 aa38.68■■■■□ 3.78
SCAMP3-209ENST00000497470 RB1CC1Q8TDY2 1594 aa38.48■■■■□ 3.75
SCAMP3-209ENST00000497470 DCAF8L2P0C7V8 631 aa38.45■■■■□ 3.75
SCAMP3-209ENST00000497470 SCRIBQ14160 1630 aa37.46■■■■□ 3.59
SCAMP3-209ENST00000497470 UNC13AQ9UPW8 1703 aa37.44■■■■□ 3.58
SCAMP3-209ENST00000497470 BICRAQ9NZM4 1560 aa37.21■■■■□ 3.55
SCAMP3-209ENST00000497470 SHROOM4Q9ULL8 1493 aa37.19■■■■□ 3.54
SCAMP3-209ENST00000497470 PABPN1Q86U42 306 aaKnown RBP eCLIP36.94■■■■□ 3.5
SCAMP3-209ENST00000497470 BAZ1AQ9NRL2 1556 aaPredicted RBP36.2■■■■□ 3.39
SCAMP3-209ENST00000497470 CECR2Q9BXF3 1484 aa36.18■■■■□ 3.38
SCAMP3-209ENST00000497470 EIF4G1Q04637 1599 aaKnown RBP36.18■■■■□ 3.38
SCAMP3-209ENST00000497470 SMARCA4P51532 1647 aa36.05■■■■□ 3.36
SCAMP3-209ENST00000497470 MROH2BQ7Z745 1585 aa35.92■■■■□ 3.34
SCAMP3-209ENST00000497470 PEG3Q9GZU2 1588 aa35.85■■■■□ 3.33
SCAMP3-209ENST00000497470 RSF1Q96T23 1441 aaPredicted RBP35.83■■■■□ 3.33
SCAMP3-209ENST00000497470 CC2D2AQ9P2K1 1620 aa35.8■■■■□ 3.32
SCAMP3-209ENST00000497470 SMARCA2P51531 1590 aa35.77■■■■□ 3.32
SCAMP3-209ENST00000497470 ATAD2BQ9ULI0 1458 aa35.73■■■■□ 3.31
SCAMP3-209ENST00000497470 NCAPD3P42695 1498 aa35.7■■■■□ 3.31
SCAMP3-209ENST00000497470 DNAJC5BQ9UF47 199 aa35.57■■■■□ 3.28
SCAMP3-209ENST00000497470 HMGXB3Q12766 1538 aa35.56■■■■□ 3.28
SCAMP3-209ENST00000497470 WIZO95785 1651 aa35.5■■■■□ 3.27
SCAMP3-209ENST00000497470 BAZ1BQ9UIG0 1483 aaKnown RBP35.42■■■■□ 3.26
SCAMP3-209ENST00000497470 TOP2AP11388 1531 aaKnown RBP35.32■■■■□ 3.24
SCAMP3-209ENST00000497470 SUPT5HO00267 1087 aaKnown RBP35.24■■■■□ 3.23
SCAMP3-209ENST00000497470 CCDC88BA6NC98 1476 aa34.85■■■■□ 3.17
SCAMP3-209ENST00000497470 CADPSQ9ULU8 1353 aa34.63■■■■□ 3.13
SCAMP3-209ENST00000497470 CFTRP13569 1480 aa34.59■■■■□ 3.13
SCAMP3-209ENST00000497470 LAMC3Q9Y6N6 1575 aa34.59■■■■□ 3.13
SCAMP3-209ENST00000497470 PDS5BQ9NTI5 1447 aa34.34■■■■□ 3.09
SCAMP3-209ENST00000497470 NESP48681 1621 aa34.33■■■■□ 3.09
SCAMP3-209ENST00000497470 PRDM2Q13029 1718 aa34.31■■■■□ 3.08
SCAMP3-209ENST00000497470 FANCD2Q9BXW9 1451 aa34.15■■■■□ 3.06
SCAMP3-209ENST00000497470 CEP164Q9UPV0 1460 aa34.06■■■■□ 3.04
SCAMP3-209ENST00000497470 ERCC6Q03468 1493 aa34.01■■■■□ 3.03
SCAMP3-209ENST00000497470 KIF21AQ7Z4S6 1674 aa33.96■■■■□ 3.03
SCAMP3-209ENST00000497470 ABCC8Q09428 1581 aa33.92■■■■□ 3.02
SCAMP3-209ENST00000497470 MRC2Q9UBG0 1479 aa33.88■■■■□ 3.01
SCAMP3-209ENST00000497470 THOC2Q8NI27 1593 aaKnown RBP33.78■■■■□ 3
SCAMP3-209ENST00000497470 WDR62O43379 1518 aa33.77■■■■□ 3
SCAMP3-209ENST00000497470 WRNQ14191 1432 aaPredicted RBP eCLIP33.77■■■■□ 3
SCAMP3-209ENST00000497470 DNMBPQ6XZF7 1577 aa33.74■■■□□ 2.99
SCAMP3-209ENST00000497470 URB2Q14146 1524 aaKnown RBP33.74■■■□□ 2.99
SCAMP3-209ENST00000497470 TOPBP1Q92547 1522 aa33.7■■■□□ 2.99
SCAMP3-209ENST00000497470 CUX1P39880 1505 aa33.66■■■□□ 2.98
SCAMP3-209ENST00000497470 TOP2BQ02880 1626 aa33.64■■■□□ 2.98
SCAMP3-209ENST00000497470 BIVM-ERCC5R4GMW8 1640 aa33.62■■■□□ 2.97
SCAMP3-209ENST00000497470 CUX2O14529 1486 aa33.58■■■□□ 2.97
SCAMP3-209ENST00000497470 SYNJ1O43426 1573 aa33.54■■■□□ 2.96
SCAMP3-209ENST00000497470 CHIC1Q5VXU3 224 aa33.46■■■□□ 2.95
SCAMP3-209ENST00000497470 POLA1P09884 1462 aaPredicted RBP33.45■■■□□ 2.95
SCAMP3-209ENST00000497470 FGD5Q6ZNL6 1462 aa33.44■■■□□ 2.94
SCAMP3-209ENST00000497470 TRIM41Q8WV44 630 aa33.4■■■□□ 2.94
SCAMP3-209ENST00000497470 IFT140Q96RY7 1462 aa33.38■■■□□ 2.93
SCAMP3-209ENST00000497470 SOGA1O94964 1423 aa33.35■■■□□ 2.93
SCAMP3-209ENST00000497470 TARBP1Q13395 1621 aaKnown RBP33.28■■■□□ 2.92
SCAMP3-209ENST00000497470 ABCA10Q8WWZ4 1543 aa33.28■■■□□ 2.92
SCAMP3-209ENST00000497470 WDR97A6NE52 1622 aa33.26■■■□□ 2.91
SCAMP3-209ENST00000497470 RAD54L2Q9Y4B4 1467 aa33.19■■■□□ 2.9
SCAMP3-209ENST00000497470 KIF27Q86VH2 1401 aa33.05■■■□□ 2.88
SCAMP3-209ENST00000497470 EEA1Q15075 1411 aa33.02■■■□□ 2.88
SCAMP3-209ENST00000497470 ABCA5Q8WWZ7 1642 aa33.01■■■□□ 2.87
SCAMP3-209ENST00000497470 ZNF608Q9ULD9 1512 aaPredicted RBP32.99■■■□□ 2.87
SCAMP3-209ENST00000497470 GAPVD1Q14C86 1478 aa32.98■■■□□ 2.87
SCAMP3-209ENST00000497470 TDRD9Q8NDG6 1382 aaKnown RBP32.97■■■□□ 2.87
SCAMP3-209ENST00000497470 EIF4G3O43432 1585 aaKnown RBP32.93■■■□□ 2.86
SCAMP3-209ENST00000497470 AQRO60306 1485 aaKnown RBP eCLIP32.92■■■□□ 2.86
SCAMP3-209ENST00000497470 GRIN2BQ13224 1484 aa32.91■■■□□ 2.86
SCAMP3-209ENST00000497470 ERICH3Q5RHP9 1530 aa32.91■■■□□ 2.86
SCAMP3-209ENST00000497470 IGF1RP08069 1367 aa32.82■■■□□ 2.84
SCAMP3-209ENST00000497470 MAGI1Q96QZ7 1491 aaPredicted RBP32.79■■■□□ 2.84
SCAMP3-209ENST00000497470 RUSC2Q8N2Y8 1516 aa32.77■■■□□ 2.84
SCAMP3-209ENST00000497470 PBRM1Q86U86 1689 aa32.76■■■□□ 2.84
SCAMP3-209ENST00000497470 CSRNP3Q8WYN3 585 aa32.72■■■□□ 2.83
SCAMP3-209ENST00000497470 CUL7Q14999 1698 aa32.7■■■□□ 2.83
SCAMP3-209ENST00000497470 FHAD1B1AJZ9 1412 aa32.68■■■□□ 2.82
SCAMP3-209ENST00000497470 SNAPC4Q5SXM2 1469 aa32.65■■■□□ 2.82
SCAMP3-209ENST00000497470 CARMIL1Q5VZK9 1371 aa32.62■■■□□ 2.81
SCAMP3-209ENST00000497470 SYNJ2O15056 1496 aa32.61■■■□□ 2.81
SCAMP3-209ENST00000497470 PRXQ9BXM0 1461 aa32.61■■■□□ 2.81
SCAMP3-209ENST00000497470 ADAMTS12P58397 1594 aa32.61■■■□□ 2.81
SCAMP3-209ENST00000497470 RAPGEF2Q9Y4G8 1499 aa32.52■■■□□ 2.8
SCAMP3-209ENST00000497470 KIF21BO75037 1637 aa32.48■■■□□ 2.79
SCAMP3-209ENST00000497470 CHMP7Q8WUX9 453 aaPredicted RBP32.47■■■□□ 2.79
SCAMP3-209ENST00000497470 FAM9AQ8IZU1 332 aaPredicted RBP32.45■■■□□ 2.79
SCAMP3-209ENST00000497470 GRIN2AQ12879 1464 aa32.45■■■□□ 2.79
SCAMP3-209ENST00000497470 NUP160Q12769 1436 aa32.34■■■□□ 2.77
SCAMP3-209ENST00000497470 CHD1O14646 1710 aa32.32■■■□□ 2.76
SCAMP3-209ENST00000497470 GOLGA3Q08378 1498 aa32.32■■■□□ 2.76
SCAMP3-209ENST00000497470 FBLN2P98095 1184 aa32.3■■■□□ 2.76
SCAMP3-209ENST00000497470 OSCARQ8IYS5 282 aa32.26■■■□□ 2.75
SCAMP3-209ENST00000497470 KIAA0586Q9BVV6 1533 aa32.22■■■□□ 2.75
SCAMP3-209ENST00000497470 CEP170Q5SW79 1584 aa32.19■■■□□ 2.74
SCAMP3-209ENST00000497470 CLASP1Q7Z460 1538 aa32.13■■■□□ 2.73
Retrieved 100 of 20,778 RNA–protein pairs in 173.2 ms