RNA–Protein interactions for RNA: ENST00000480219.1

SCAMP3-207, Transcript of secretory carrier membrane protein 3, humanhuman

TSL 2

Gene SCAMP3, Length 752 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAMP3-207ENST00000480219 NISCHQ9Y2I1 1504 aa39.69■■■■□ 3.94
SCAMP3-207ENST00000480219 CCDC180Q9P1Z9 1646 aa34.97■■■■□ 3.19
SCAMP3-207ENST00000480219 ABCC9O60706 1549 aa33.3■■■□□ 2.92
SCAMP3-207ENST00000480219 ZCCHC6Q5VYS8 1495 aaKnown RBP33.26■■■□□ 2.92
SCAMP3-207ENST00000480219 DCAF1Q9Y4B6 1507 aa32.98■■■□□ 2.87
SCAMP3-207ENST00000480219 MYO15BQ96JP2 1530 aa32.84■■■□□ 2.85
SCAMP3-207ENST00000480219 NACADO15069 1562 aa32.67■■■□□ 2.82
SCAMP3-207ENST00000480219 DCAF8L2P0C7V8 631 aa32.54■■■□□ 2.8
SCAMP3-207ENST00000480219 RB1CC1Q8TDY2 1594 aa32.47■■■□□ 2.79
SCAMP3-207ENST00000480219 SCRIBQ14160 1630 aa31.83■■■□□ 2.69
SCAMP3-207ENST00000480219 UNC13AQ9UPW8 1703 aa31.74■■■□□ 2.67
SCAMP3-207ENST00000480219 SHROOM4Q9ULL8 1493 aa31.61■■■□□ 2.65
SCAMP3-207ENST00000480219 BICRAQ9NZM4 1560 aa31.51■■■□□ 2.64
SCAMP3-207ENST00000480219 PABPN1Q86U42 306 aaKnown RBP eCLIP31.2■■■□□ 2.59
SCAMP3-207ENST00000480219 CECR2Q9BXF3 1484 aa30.77■■■□□ 2.52
SCAMP3-207ENST00000480219 BAZ1AQ9NRL2 1556 aaPredicted RBP30.7■■■□□ 2.5
SCAMP3-207ENST00000480219 SMARCA4P51532 1647 aa30.61■■■□□ 2.49
SCAMP3-207ENST00000480219 EIF4G1Q04637 1599 aaKnown RBP30.58■■■□□ 2.49
SCAMP3-207ENST00000480219 MROH2BQ7Z745 1585 aa30.57■■■□□ 2.48
SCAMP3-207ENST00000480219 RSF1Q96T23 1441 aaPredicted RBP30.52■■■□□ 2.48
SCAMP3-207ENST00000480219 PEG3Q9GZU2 1588 aa30.4■■■□□ 2.46
SCAMP3-207ENST00000480219 ATAD2BQ9ULI0 1458 aa30.25■■■□□ 2.43
SCAMP3-207ENST00000480219 SMARCA2P51531 1590 aa30.25■■■□□ 2.43
SCAMP3-207ENST00000480219 WIZO95785 1651 aa30.24■■■□□ 2.43
SCAMP3-207ENST00000480219 CC2D2AQ9P2K1 1620 aa30.22■■■□□ 2.43
SCAMP3-207ENST00000480219 NCAPD3P42695 1498 aa30.15■■■□□ 2.42
SCAMP3-207ENST00000480219 SUPT5HO00267 1087 aaKnown RBP30.13■■■□□ 2.41
SCAMP3-207ENST00000480219 HMGXB3Q12766 1538 aa30.08■■■□□ 2.41
SCAMP3-207ENST00000480219 TOP2AP11388 1531 aaKnown RBP30.03■■■□□ 2.4
SCAMP3-207ENST00000480219 BAZ1BQ9UIG0 1483 aaKnown RBP29.99■■■□□ 2.39
SCAMP3-207ENST00000480219 DNAJC5BQ9UF47 199 aa29.86■■■□□ 2.37
SCAMP3-207ENST00000480219 CCDC88BA6NC98 1476 aa29.64■■■□□ 2.34
SCAMP3-207ENST00000480219 CFTRP13569 1480 aa29.29■■■□□ 2.28
SCAMP3-207ENST00000480219 CADPSQ9ULU8 1353 aa29.26■■■□□ 2.28
SCAMP3-207ENST00000480219 LAMC3Q9Y6N6 1575 aa29.21■■■□□ 2.27
SCAMP3-207ENST00000480219 PRDM2Q13029 1718 aa29.12■■■□□ 2.25
SCAMP3-207ENST00000480219 NESP48681 1621 aa29.07■■■□□ 2.24
SCAMP3-207ENST00000480219 PDS5BQ9NTI5 1447 aa28.94■■■□□ 2.22
SCAMP3-207ENST00000480219 FANCD2Q9BXW9 1451 aa28.9■■■□□ 2.22
SCAMP3-207ENST00000480219 CEP164Q9UPV0 1460 aa28.79■■■□□ 2.2
SCAMP3-207ENST00000480219 KIF21AQ7Z4S6 1674 aa28.77■■■□□ 2.2
SCAMP3-207ENST00000480219 ABCC8Q09428 1581 aa28.75■■■□□ 2.19
SCAMP3-207ENST00000480219 WRNQ14191 1432 aaPredicted RBP eCLIP28.72■■■□□ 2.19
SCAMP3-207ENST00000480219 CHIC1Q5VXU3 224 aa28.72■■■□□ 2.19
SCAMP3-207ENST00000480219 CUX1P39880 1505 aa28.64■■■□□ 2.17
SCAMP3-207ENST00000480219 TOP2BQ02880 1626 aa28.62■■■□□ 2.17
SCAMP3-207ENST00000480219 BIVM-ERCC5R4GMW8 1640 aa28.62■■■□□ 2.17
SCAMP3-207ENST00000480219 SYNJ1O43426 1573 aa28.62■■■□□ 2.17
SCAMP3-207ENST00000480219 ERCC6Q03468 1493 aa28.61■■■□□ 2.17
SCAMP3-207ENST00000480219 MRC2Q9UBG0 1479 aa28.6■■■□□ 2.17
SCAMP3-207ENST00000480219 DNMBPQ6XZF7 1577 aa28.6■■■□□ 2.17
SCAMP3-207ENST00000480219 URB2Q14146 1524 aaKnown RBP28.59■■■□□ 2.17
SCAMP3-207ENST00000480219 TOPBP1Q92547 1522 aa28.55■■■□□ 2.16
SCAMP3-207ENST00000480219 THOC2Q8NI27 1593 aaKnown RBP28.54■■■□□ 2.16
SCAMP3-207ENST00000480219 WDR62O43379 1518 aa28.53■■■□□ 2.16
SCAMP3-207ENST00000480219 TRIM41Q8WV44 630 aa28.48■■■□□ 2.15
SCAMP3-207ENST00000480219 FGD5Q6ZNL6 1462 aa28.39■■■□□ 2.13
SCAMP3-207ENST00000480219 POLA1P09884 1462 aaPredicted RBP28.37■■■□□ 2.13
SCAMP3-207ENST00000480219 CUX2O14529 1486 aa28.26■■■□□ 2.11
SCAMP3-207ENST00000480219 SOGA1O94964 1423 aa28.22■■■□□ 2.11
SCAMP3-207ENST00000480219 TARBP1Q13395 1621 aaKnown RBP28.21■■■□□ 2.11
SCAMP3-207ENST00000480219 ABCA10Q8WWZ4 1543 aa28.21■■■□□ 2.11
SCAMP3-207ENST00000480219 WDR97A6NE52 1622 aa28.18■■■□□ 2.1
SCAMP3-207ENST00000480219 IFT140Q96RY7 1462 aa28.18■■■□□ 2.1
SCAMP3-207ENST00000480219 RAD54L2Q9Y4B4 1467 aa28.17■■■□□ 2.1
SCAMP3-207ENST00000480219 EEA1Q15075 1411 aa28.11■■■□□ 2.09
SCAMP3-207ENST00000480219 KIF27Q86VH2 1401 aa28.06■■■□□ 2.08
SCAMP3-207ENST00000480219 ABCA5Q8WWZ7 1642 aa28.03■■■□□ 2.08
SCAMP3-207ENST00000480219 RUSC2Q8N2Y8 1516 aa28.02■■■□□ 2.08
SCAMP3-207ENST00000480219 ZNF608Q9ULD9 1512 aaPredicted RBP27.94■■■□□ 2.06
SCAMP3-207ENST00000480219 TDRD9Q8NDG6 1382 aaKnown RBP27.93■■■□□ 2.06
SCAMP3-207ENST00000480219 GAPVD1Q14C86 1478 aa27.92■■■□□ 2.06
SCAMP3-207ENST00000480219 EIF4G3O43432 1585 aaKnown RBP27.9■■■□□ 2.06
SCAMP3-207ENST00000480219 ERICH3Q5RHP9 1530 aa27.89■■■□□ 2.06
SCAMP3-207ENST00000480219 IGF1RP08069 1367 aa27.86■■■□□ 2.05
SCAMP3-207ENST00000480219 CSRNP3Q8WYN3 585 aa27.86■■■□□ 2.05
SCAMP3-207ENST00000480219 AQRO60306 1485 aaKnown RBP eCLIP27.86■■■□□ 2.05
SCAMP3-207ENST00000480219 GRIN2BQ13224 1484 aa27.83■■■□□ 2.05
SCAMP3-207ENST00000480219 PBRM1Q86U86 1689 aa27.81■■■□□ 2.04
SCAMP3-207ENST00000480219 PRXQ9BXM0 1461 aa27.79■■■□□ 2.04
SCAMP3-207ENST00000480219 FAM9AQ8IZU1 332 aaPredicted RBP27.78■■■□□ 2.04
SCAMP3-207ENST00000480219 CUL7Q14999 1698 aa27.77■■■□□ 2.04
SCAMP3-207ENST00000480219 KIF21BO75037 1637 aa27.74■■■□□ 2.03
SCAMP3-207ENST00000480219 MAGI1Q96QZ7 1491 aaPredicted RBP27.7■■■□□ 2.02
SCAMP3-207ENST00000480219 CARMIL1Q5VZK9 1371 aa27.68■■■□□ 2.02
SCAMP3-207ENST00000480219 ADAMTS12P58397 1594 aa27.68■■■□□ 2.02
SCAMP3-207ENST00000480219 FHAD1B1AJZ9 1412 aa27.66■■■□□ 2.02
SCAMP3-207ENST00000480219 SNAPC4Q5SXM2 1469 aa27.65■■■□□ 2.02
SCAMP3-207ENST00000480219 RAPGEF2Q9Y4G8 1499 aa27.63■■■□□ 2.01
SCAMP3-207ENST00000480219 GOLGA3Q08378 1498 aa27.6■■■□□ 2.01
SCAMP3-207ENST00000480219 SYNJ2O15056 1496 aa27.57■■■□□ 2
SCAMP3-207ENST00000480219 GRIN2AQ12879 1464 aa27.48■■□□□ 1.99
SCAMP3-207ENST00000480219 LOC105371045A0A1W2PR82 267 aa27.45■■□□□ 1.98
SCAMP3-207ENST00000480219 TNIKQ9UKE5 1360 aa27.43■■□□□ 1.98
SCAMP3-207ENST00000480219 NUP160Q12769 1436 aa27.37■■□□□ 1.97
SCAMP3-207ENST00000480219 CHMP7Q8WUX9 453 aaPredicted RBP27.37■■□□□ 1.97
SCAMP3-207ENST00000480219 CHD1O14646 1710 aa27.36■■□□□ 1.97
SCAMP3-207ENST00000480219 CTTNBP2Q8WZ74 1663 aa27.32■■□□□ 1.96
SCAMP3-207ENST00000480219 UBTFP17480 764 aaKnown RBP27.31■■□□□ 1.96
SCAMP3-207ENST00000480219 CEP170Q5SW79 1584 aa27.31■■□□□ 1.96
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms