RNA–Protein interactions for RNA: ENST00000539687.5

SPARC-209, Transcript of secreted protein acidic and cysteine rich, humanhuman

TSL 5

Gene SPARC, Length 511 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPARC-209ENST00000539687 NISCHQ9Y2I1 1504 aa22.4■■□□□ 1.18
SPARC-209ENST00000539687 AEBP2Q6ZN18 517 aaPredicted RBP21.71■■□□□ 1.07
SPARC-209ENST00000539687 CHIC1Q5VXU3 224 aa20.82■□□□□ 0.92
SPARC-209ENST00000539687 CCDC180Q9P1Z9 1646 aa19.51■□□□□ 0.71
SPARC-209ENST00000539687 ZCCHC6Q5VYS8 1495 aaKnown RBP18.88■□□□□ 0.61
SPARC-209ENST00000539687 ABCC9O60706 1549 aa18.64■□□□□ 0.58
SPARC-209ENST00000539687 DCAF1Q9Y4B6 1507 aa18.64■□□□□ 0.57
SPARC-209ENST00000539687 MYO15BQ96JP2 1530 aa18.37■□□□□ 0.53
SPARC-209ENST00000539687 PHF23Q9BUL5 403 aaPredicted RBP18.36■□□□□ 0.53
SPARC-209ENST00000539687 SENP3Q9H4L4 574 aaPredicted RBP18.33■□□□□ 0.52
SPARC-209ENST00000539687 DCAF8L2P0C7V8 631 aa18.28■□□□□ 0.52
SPARC-209ENST00000539687 SHROOM4Q9ULL8 1493 aa18.25■□□□□ 0.51
SPARC-209ENST00000539687 NACADO15069 1562 aa18.13■□□□□ 0.49
SPARC-209ENST00000539687 RB1CC1Q8TDY2 1594 aa17.89■□□□□ 0.45
SPARC-209ENST00000539687 DNAJC5BQ9UF47 199 aa17.88■□□□□ 0.45
SPARC-209ENST00000539687 SCRIBQ14160 1630 aa17.82■□□□□ 0.44
SPARC-209ENST00000539687 SUPT5HO00267 1087 aaKnown RBP17.72■□□□□ 0.43
SPARC-209ENST00000539687 RSF1Q96T23 1441 aaPredicted RBP17.42■□□□□ 0.38
SPARC-209ENST00000539687 UNC13AQ9UPW8 1703 aa17.37■□□□□ 0.37
SPARC-209ENST00000539687 BAZ1AQ9NRL2 1556 aaPredicted RBP17.34■□□□□ 0.37
SPARC-209ENST00000539687 PABPN1Q86U42 306 aaKnown RBP eCLIP17.26■□□□□ 0.35
SPARC-209ENST00000539687 CECR2Q9BXF3 1484 aa17.25■□□□□ 0.35
SPARC-209ENST00000539687 MROH2BQ7Z745 1585 aa17.23■□□□□ 0.35
SPARC-209ENST00000539687 BICRAQ9NZM4 1560 aa17.2■□□□□ 0.34
SPARC-209ENST00000539687 SMARCA4P51532 1647 aa17.16■□□□□ 0.34
SPARC-209ENST00000539687 FOXD1Q16676 465 aa17.13■□□□□ 0.33
SPARC-209ENST00000539687 WIZO95785 1651 aa17.09■□□□□ 0.33
SPARC-209ENST00000539687 TOP2AP11388 1531 aaKnown RBP17.05■□□□□ 0.32
SPARC-209ENST00000539687 PEG3Q9GZU2 1588 aa17■□□□□ 0.31
SPARC-209ENST00000539687 SMARCA2P51531 1590 aa16.9■□□□□ 0.3
SPARC-209ENST00000539687 CC2D2AQ9P2K1 1620 aa16.83■□□□□ 0.28
SPARC-209ENST00000539687 ATAD2BQ9ULI0 1458 aa16.81■□□□□ 0.28
SPARC-209ENST00000539687 CCDC88BA6NC98 1476 aa16.8■□□□□ 0.28
SPARC-209ENST00000539687 EIF4G1Q04637 1599 aaKnown RBP16.77■□□□□ 0.28
SPARC-209ENST00000539687 DNAJC5Q9H3Z4 198 aa16.77■□□□□ 0.28
SPARC-209ENST00000539687 BAZ1BQ9UIG0 1483 aaKnown RBP16.77■□□□□ 0.28
SPARC-209ENST00000539687 TRIM41Q8WV44 630 aa16.76■□□□□ 0.27
SPARC-209ENST00000539687 HMGXB3Q12766 1538 aa16.71■□□□□ 0.27
SPARC-209ENST00000539687 PLPPR3Q6T4P5 718 aa16.7■□□□□ 0.26
SPARC-209ENST00000539687 NCAPD3P42695 1498 aa16.67■□□□□ 0.26
SPARC-209ENST00000539687 EEA1Q15075 1411 aa16.47■□□□□ 0.23
SPARC-209ENST00000539687 ABCC8Q09428 1581 aa16.45■□□□□ 0.22
SPARC-209ENST00000539687 WRNQ14191 1432 aaPredicted RBP eCLIP16.45■□□□□ 0.22
SPARC-209ENST00000539687 LOC105371045A0A1W2PR82 267 aa16.37■□□□□ 0.21
SPARC-209ENST00000539687 CFTRP13569 1480 aa16.35■□□□□ 0.21
SPARC-209ENST00000539687 PRDM2Q13029 1718 aa16.31■□□□□ 0.2
SPARC-209ENST00000539687 FAM9AQ8IZU1 332 aaPredicted RBP16.3■□□□□ 0.2
SPARC-209ENST00000539687 PPP6R1Q9UPN7 881 aa16.29■□□□□ 0.2
SPARC-209ENST00000539687 TOP2BQ02880 1626 aa16.29■□□□□ 0.2
SPARC-209ENST00000539687 SYNJ1O43426 1573 aa16.29■□□□□ 0.2
SPARC-209ENST00000539687 BIVM-ERCC5R4GMW8 1640 aa16.27■□□□□ 0.2
SPARC-209ENST00000539687 CUX2O14529 1486 aa16.25■□□□□ 0.19
SPARC-209ENST00000539687 CADPSQ9ULU8 1353 aa16.25■□□□□ 0.19
SPARC-209ENST00000539687 ADRA2BP18089 450 aa16.22■□□□□ 0.19
SPARC-209ENST00000539687 CSRNP3Q8WYN3 585 aa16.21■□□□□ 0.19
SPARC-209ENST00000539687 SOGA1O94964 1423 aa16.2■□□□□ 0.18
SPARC-209ENST00000539687 GOLGA3Q08378 1498 aa16.16■□□□□ 0.18
SPARC-209ENST00000539687 KIF21BO75037 1637 aa16.16■□□□□ 0.18
SPARC-209ENST00000539687 CEP164Q9UPV0 1460 aa16.15■□□□□ 0.18
SPARC-209ENST00000539687 TNIKQ9UKE5 1360 aa16.14■□□□□ 0.17
SPARC-209ENST00000539687 ERCC6Q03468 1493 aa16.14■□□□□ 0.17
SPARC-209ENST00000539687 CUX1P39880 1505 aa16.12■□□□□ 0.17
SPARC-209ENST00000539687 LAMC3Q9Y6N6 1575 aa16.11■□□□□ 0.17
SPARC-209ENST00000539687 RUSC2Q8N2Y8 1516 aa16.07■□□□□ 0.16
SPARC-209ENST00000539687 KIF27Q86VH2 1401 aa16.06■□□□□ 0.16
SPARC-209ENST00000539687 FANCD2Q9BXW9 1451 aa16.05■□□□□ 0.16
SPARC-209ENST00000539687 TRIM26Q12899 539 aaPredicted RBP16.03■□□□□ 0.16
SPARC-209ENST00000539687 PIAS4Q8N2W9 510 aaPredicted RBP16.03■□□□□ 0.16
SPARC-209ENST00000539687 ERICH3Q5RHP9 1530 aa16.03■□□□□ 0.16
SPARC-209ENST00000539687 CEP162Q5TB80 1403 aa16.02■□□□□ 0.15
SPARC-209ENST00000539687 UBTFP17480 764 aaKnown RBP15.99■□□□□ 0.15
SPARC-209ENST00000539687 DNMBPQ6XZF7 1577 aa15.99■□□□□ 0.15
SPARC-209ENST00000539687 PDS5BQ9NTI5 1447 aa15.98■□□□□ 0.15
SPARC-209ENST00000539687 EHMT2Q96KQ7 1210 aa15.96■□□□□ 0.15
SPARC-209ENST00000539687 PRXQ9BXM0 1461 aa15.96■□□□□ 0.14
SPARC-209ENST00000539687 PCGF6Q9BYE7 350 aa15.95■□□□□ 0.14
SPARC-209ENST00000539687 FGD5Q6ZNL6 1462 aa15.93■□□□□ 0.14
SPARC-209ENST00000539687 RAPGEF2Q9Y4G8 1499 aa15.9■□□□□ 0.14
SPARC-209ENST00000539687 TOPBP1Q92547 1522 aa15.89■□□□□ 0.13
SPARC-209ENST00000539687 NESP48681 1621 aa15.87■□□□□ 0.13
SPARC-209ENST00000539687 CLIP1P30622 1438 aa15.86■□□□□ 0.13
SPARC-209ENST00000539687 ABCA10Q8WWZ4 1543 aa15.86■□□□□ 0.13
SPARC-209ENST00000539687 THOC2Q8NI27 1593 aaKnown RBP15.83■□□□□ 0.12
SPARC-209ENST00000539687 POLA1P09884 1462 aaPredicted RBP15.82■□□□□ 0.12
SPARC-209ENST00000539687 MSH5O43196 834 aa15.81■□□□□ 0.12
SPARC-209ENST00000539687 IGF1RP08069 1367 aa15.79■□□□□ 0.12
SPARC-209ENST00000539687 VPS8Q8N3P4 1428 aa15.78■□□□□ 0.12
SPARC-209ENST00000539687 URB2Q14146 1524 aaKnown RBP15.78■□□□□ 0.12
SPARC-209ENST00000539687 HRCP23327 699 aa15.77■□□□□ 0.12
SPARC-209ENST00000539687 CUL7Q14999 1698 aa15.76■□□□□ 0.11
SPARC-209ENST00000539687 CARMIL1Q5VZK9 1371 aa15.75■□□□□ 0.11
SPARC-209ENST00000539687 KIF21AQ7Z4S6 1674 aa15.74■□□□□ 0.11
SPARC-209ENST00000539687 WDR97A6NE52 1622 aa15.74■□□□□ 0.11
SPARC-209ENST00000539687 MRC2Q9UBG0 1479 aa15.72■□□□□ 0.11
SPARC-209ENST00000539687 APLP2Q06481 763 aa15.7■□□□□ 0.1
SPARC-209ENST00000539687 RAD54L2Q9Y4B4 1467 aa15.7■□□□□ 0.1
SPARC-209ENST00000539687 ABCA5Q8WWZ7 1642 aa15.68■□□□□ 0.1
SPARC-209ENST00000539687 ZEB1P37275 1124 aaPredicted RBP15.66■□□□□ 0.1
SPARC-209ENST00000539687 GAPVD1Q14C86 1478 aa15.64■□□□□ 0.09
SPARC-209ENST00000539687 ARAP1Q96P48 1450 aa15.63■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 203 ms