RNA–Protein interactions for RNA: ENST00000522243.5

SDCBP-209, Transcript of syndecan binding protein, humanhuman

TSL 5

Gene SDCBP, Length 556 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-209ENST00000522243 NISCHQ9Y2I1 1504 aa51.31■■■■■ 5.8
SDCBP-209ENST00000522243 CCDC180Q9P1Z9 1646 aa45.87■■■■■ 4.93
SDCBP-209ENST00000522243 ABCC9O60706 1549 aa45.61■■■■■ 4.89
SDCBP-209ENST00000522243 RB1CC1Q8TDY2 1594 aa43.5■■■■■ 4.55
SDCBP-209ENST00000522243 DCAF8L2P0C7V8 631 aa43.28■■■■■ 4.52
SDCBP-209ENST00000522243 NACADO15069 1562 aa43.27■■■■■ 4.52
SDCBP-209ENST00000522243 MYO15BQ96JP2 1530 aa42.72■■■■■ 4.43
SDCBP-209ENST00000522243 UNC13AQ9UPW8 1703 aa42.6■■■■■ 4.41
SDCBP-209ENST00000522243 ZCCHC6Q5VYS8 1495 aaKnown RBP42.59■■■■■ 4.41
SDCBP-209ENST00000522243 PABPN1Q86U42 306 aaKnown RBP eCLIP42.54■■■■■ 4.4
SDCBP-209ENST00000522243 DNAJC5BQ9UF47 199 aa42.46■■■■■ 4.39
SDCBP-209ENST00000522243 DCAF1Q9Y4B6 1507 aa42.33■■■■■ 4.37
SDCBP-209ENST00000522243 BICRAQ9NZM4 1560 aa42.24■■■■■ 4.35
SDCBP-209ENST00000522243 SCRIBQ14160 1630 aa41.91■■■■■ 4.3
SDCBP-209ENST00000522243 SHROOM4Q9ULL8 1493 aa41.58■■■■■ 4.25
SDCBP-209ENST00000522243 CC2D2AQ9P2K1 1620 aa41.19■■■■■ 4.18
SDCBP-209ENST00000522243 EIF4G1Q04637 1599 aaKnown RBP41.16■■■■■ 4.18
SDCBP-209ENST00000522243 CECR2Q9BXF3 1484 aa41■■■■■ 4.15
SDCBP-209ENST00000522243 SMARCA4P51532 1647 aa39.97■■■■□ 3.99
SDCBP-209ENST00000522243 NCAPD3P42695 1498 aa39.94■■■■□ 3.98
SDCBP-209ENST00000522243 ATAD2BQ9ULI0 1458 aa39.89■■■■□ 3.98
SDCBP-209ENST00000522243 BAZ1AQ9NRL2 1556 aaPredicted RBP39.8■■■■□ 3.96
SDCBP-209ENST00000522243 SMARCA2P51531 1590 aa39.79■■■■□ 3.96
SDCBP-209ENST00000522243 HMGXB3Q12766 1538 aa39.67■■■■□ 3.94
SDCBP-209ENST00000522243 MROH2BQ7Z745 1585 aa39.58■■■■□ 3.93
SDCBP-209ENST00000522243 BAZ1BQ9UIG0 1483 aaKnown RBP39.55■■■■□ 3.92
SDCBP-209ENST00000522243 PEG3Q9GZU2 1588 aa39.51■■■■□ 3.92
SDCBP-209ENST00000522243 ERCC6Q03468 1493 aa39.32■■■■□ 3.89
SDCBP-209ENST00000522243 NESP48681 1621 aa39.28■■■■□ 3.88
SDCBP-209ENST00000522243 WIZO95785 1651 aa39.16■■■■□ 3.86
SDCBP-209ENST00000522243 CUX2O14529 1486 aa39.06■■■■□ 3.84
SDCBP-209ENST00000522243 LAMC3Q9Y6N6 1575 aa38.99■■■■□ 3.83
SDCBP-209ENST00000522243 RSF1Q96T23 1441 aaPredicted RBP38.86■■■■□ 3.81
SDCBP-209ENST00000522243 KIF21AQ7Z4S6 1674 aa38.8■■■■□ 3.8
SDCBP-209ENST00000522243 THOC2Q8NI27 1593 aaKnown RBP38.77■■■■□ 3.8
SDCBP-209ENST00000522243 CADPSQ9ULU8 1353 aa38.76■■■■□ 3.8
SDCBP-209ENST00000522243 PDS5BQ9NTI5 1447 aa38.75■■■■□ 3.79
SDCBP-209ENST00000522243 DNAJC5Q9H3Z4 198 aa38.66■■■■□ 3.78
SDCBP-209ENST00000522243 TOP2AP11388 1531 aaKnown RBP38.63■■■■□ 3.77
SDCBP-209ENST00000522243 MRC2Q9UBG0 1479 aa38.41■■■■□ 3.74
SDCBP-209ENST00000522243 CFTRP13569 1480 aa38.38■■■■□ 3.73
SDCBP-209ENST00000522243 CEP164Q9UPV0 1460 aa38.35■■■■□ 3.73
SDCBP-209ENST00000522243 FANCD2Q9BXW9 1451 aa38.34■■■■□ 3.73
SDCBP-209ENST00000522243 WDR62O43379 1518 aa38.3■■■■□ 3.72
SDCBP-209ENST00000522243 CCDC88BA6NC98 1476 aa38.21■■■■□ 3.71
SDCBP-209ENST00000522243 PRDM2Q13029 1718 aa38.08■■■■□ 3.69
SDCBP-209ENST00000522243 URB2Q14146 1524 aaKnown RBP38.02■■■■□ 3.68
SDCBP-209ENST00000522243 TOPBP1Q92547 1522 aa37.66■■■■□ 3.62
SDCBP-209ENST00000522243 ABCC8Q09428 1581 aa37.55■■■■□ 3.6
SDCBP-209ENST00000522243 DNMBPQ6XZF7 1577 aa37.55■■■■□ 3.6
SDCBP-209ENST00000522243 IFT140Q96RY7 1462 aa37.54■■■■□ 3.6
SDCBP-209ENST00000522243 SUPT5HO00267 1087 aaKnown RBP37.52■■■■□ 3.6
SDCBP-209ENST00000522243 ZNF608Q9ULD9 1512 aaPredicted RBP37.5■■■■□ 3.59
SDCBP-209ENST00000522243 OSCARQ8IYS5 282 aa37.39■■■■□ 3.58
SDCBP-209ENST00000522243 EIF4G3O43432 1585 aaKnown RBP37.3■■■■□ 3.56
SDCBP-209ENST00000522243 TARBP1Q13395 1621 aaKnown RBP37.29■■■■□ 3.56
SDCBP-209ENST00000522243 POLA1P09884 1462 aaPredicted RBP37.29■■■■□ 3.56
SDCBP-209ENST00000522243 TRIM41Q8WV44 630 aa37.22■■■■□ 3.55
SDCBP-209ENST00000522243 AQRO60306 1485 aaKnown RBP eCLIP37.21■■■■□ 3.55
SDCBP-209ENST00000522243 RAD54L2Q9Y4B4 1467 aa37.2■■■■□ 3.55
SDCBP-209ENST00000522243 CUX1P39880 1505 aa37.15■■■■□ 3.54
SDCBP-209ENST00000522243 SOGA1O94964 1423 aa37.15■■■■□ 3.54
SDCBP-209ENST00000522243 FGD5Q6ZNL6 1462 aa37.13■■■■□ 3.54
SDCBP-209ENST00000522243 TDRD9Q8NDG6 1382 aaKnown RBP37.04■■■■□ 3.52
SDCBP-209ENST00000522243 CHD1O14646 1710 aa37■■■■□ 3.51
SDCBP-209ENST00000522243 FBLN2P98095 1184 aa36.94■■■■□ 3.5
SDCBP-209ENST00000522243 RIMBP3CA6NJZ7 1639 aa36.89■■■■□ 3.5
SDCBP-209ENST00000522243 RIMBP3BA6NNM3 1639 aa36.89■■■■□ 3.5
SDCBP-209ENST00000522243 RIMBP3Q9UFD9 1639 aa36.89■■■■□ 3.5
SDCBP-209ENST00000522243 WDR97A6NE52 1622 aa36.87■■■■□ 3.49
SDCBP-209ENST00000522243 SNAPC4Q5SXM2 1469 aa36.83■■■■□ 3.49
SDCBP-209ENST00000522243 ARHGEF11O15085 1522 aa36.79■■■■□ 3.48
SDCBP-209ENST00000522243 GRIN2BQ13224 1484 aa36.75■■■■□ 3.47
SDCBP-209ENST00000522243 MAGI1Q96QZ7 1491 aaPredicted RBP36.7■■■■□ 3.47
SDCBP-209ENST00000522243 PBRM1Q86U86 1689 aa36.7■■■■□ 3.47
SDCBP-209ENST00000522243 ABCA10Q8WWZ4 1543 aa36.69■■■■□ 3.46
SDCBP-209ENST00000522243 GAPVD1Q14C86 1478 aa36.69■■■■□ 3.46
SDCBP-209ENST00000522243 CHMP7Q8WUX9 453 aaPredicted RBP36.68■■■■□ 3.46
SDCBP-209ENST00000522243 WRNQ14191 1432 aaPredicted RBP eCLIP36.67■■■■□ 3.46
SDCBP-209ENST00000522243 BIVM-ERCC5R4GMW8 1640 aa36.65■■■■□ 3.46
SDCBP-209ENST00000522243 SYNJ1O43426 1573 aa36.64■■■■□ 3.46
SDCBP-209ENST00000522243 TOP2BQ02880 1626 aa36.63■■■■□ 3.45
SDCBP-209ENST00000522243 ABCA5Q8WWZ7 1642 aa36.63■■■■□ 3.45
SDCBP-209ENST00000522243 SYNJ2O15056 1496 aa36.58■■■■□ 3.45
SDCBP-209ENST00000522243 CYB5RLQ6IPT4 315 aa36.54■■■■□ 3.44
SDCBP-209ENST00000522243 CLASP1Q7Z460 1538 aa36.52■■■■□ 3.44
SDCBP-209ENST00000522243 ARAP1Q96P48 1450 aa36.45■■■■□ 3.43
SDCBP-209ENST00000522243 ADAMTS12P58397 1594 aa36.32■■■■□ 3.41
SDCBP-209ENST00000522243 GRIN2AQ12879 1464 aa36.3■■■■□ 3.4
SDCBP-209ENST00000522243 ERICH3Q5RHP9 1530 aa36.23■■■■□ 3.39
SDCBP-209ENST00000522243 FHAD1B1AJZ9 1412 aa36.22■■■■□ 3.39
SDCBP-209ENST00000522243 CEP170Q5SW79 1584 aa36.18■■■■□ 3.38
SDCBP-209ENST00000522243 NUP160Q12769 1436 aa36.14■■■■□ 3.38
SDCBP-209ENST00000522243 TRHP20396 242 aaPredicted RBP36.04■■■■□ 3.36
SDCBP-209ENST00000522243 ERCC6L2Q5T890 1561 aa36.04■■■■□ 3.36
SDCBP-209ENST00000522243 SHROOM2Q13796 1616 aa35.94■■■■□ 3.34
SDCBP-209ENST00000522243 KIF27Q86VH2 1401 aa35.93■■■■□ 3.34
SDCBP-209ENST00000522243 IGF1RP08069 1367 aa35.88■■■■□ 3.33
SDCBP-209ENST00000522243 JPH4Q96JJ6 628 aa35.81■■■■□ 3.32
SDCBP-209ENST00000522243 RUSC2Q8N2Y8 1516 aa35.8■■■■□ 3.32
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms