Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 SLC25A39-216ENST00000592857 837 ntTSL 326.11■■□□□ 1.771e-6■□□□□ 9.4
DDX55Q8NHQ9 SLC25A39-210ENST00000588315 1409 ntTSL 224.49■■□□□ 1.511e-6■□□□□ 9.4
DDX55Q8NHQ9 SLC25A39-209ENST00000588049 839 ntTSL 524.39■■□□□ 1.491e-6■□□□□ 9.4
DDX55Q8NHQ9 SLC25A39-208ENST00000586633 566 ntTSL 322.08■■□□□ 1.131e-6■□□□□ 9.4
DDX55Q8NHQ9 SLC25A39-214ENST00000591151 636 ntTSL 218.09■□□□□ 0.491e-6■□□□□ 9.4
DDX55Q8NHQ9 UBE2D3-207ENST00000394801 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC16.53■□□□□ 0.245e-17■□□□□ 9.4
DDX55Q8NHQ9 UBE2D3-210ENST00000453744 3990 ntAPPRIS ALT1 TSL 1 (best) BASIC14.61□□□□□ -0.075e-17■□□□□ 9.4
DDX55Q8NHQ9 UBE2D3-209ENST00000394804 4166 ntAPPRIS ALT1 TSL 5 BASIC12.33□□□□□ -0.445e-17■□□□□ 9.4
DDX55Q8NHQ9 UBE2D3-208ENST00000394803 2227 ntAPPRIS ALT1 TSL 1 (best) BASIC10.46□□□□□ -0.735e-17■□□□□ 9.4
DDX55Q8NHQ9 UBE2D3-203ENST00000343106 2389 ntAPPRIS P4 TSL 2 BASIC10.3□□□□□ -0.765e-17■□□□□ 9.4
DDX55Q8NHQ9 UBE2D3-224ENST00000508474 4819 ntTSL 28.29□□□□□ -1.085e-17■□□□□ 9.4
DDX55Q8NHQ9 UBE2D3-233ENST00000618836 3472 ntAPPRIS ALT1 TSL 5 BASIC3.92□□□□□ -1.785e-17■□□□□ 9.4
DDX55Q8NHQ9 DDX39A-206ENST00000587730 1813 ntTSL 1 (best)19.19■□□□□ 0.663e-14■□□□□ 9.4
DDX55Q8NHQ9 DDX39A-208ENST00000588692 1478 ntTSL 517.77■□□□□ 0.443e-14■□□□□ 9.4
DDX55Q8NHQ9 DDX39A-201ENST00000242776 1471 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.393e-14■□□□□ 9.4
DDX55Q8NHQ9 DDX39A-209ENST00000589318 1903 ntTSL 1 (best)17.36■□□□□ 0.373e-14■□□□□ 9.4
DDX55Q8NHQ9 MYLIP-201ENST00000349606 2796 ntTSL 1 (best) BASIC15.81■□□□□ 0.124e-8■□□□□ 9.4
DDX55Q8NHQ9 DDX39A-202ENST00000324340 1355 ntTSL 1 (best)14.7□□□□□ -0.063e-14■□□□□ 9.4
DDX55Q8NHQ9 NEDD4L-238ENST00000635997 4402 ntTSL 5 BASIC15.22■□□□□ 0.036e-22■□□□□ 9.4
DDX55Q8NHQ9 NEDD4L-220ENST00000587881 1984 ntTSL 515.01□□□□□ -0.016e-22■□□□□ 9.4
DDX55Q8NHQ9 NEDD4L-208ENST00000456173 4978 ntTSL 1 (best) BASIC13.85□□□□□ -0.196e-22■□□□□ 9.4
DDX55Q8NHQ9 NEDD4L-224ENST00000588712 2066 ntTSL 212.19□□□□□ -0.466e-22■□□□□ 9.4
DDX55Q8NHQ9 NEDD4L-206ENST00000431212 3338 ntTSL 1 (best) BASIC10.82□□□□□ -0.686e-22■□□□□ 9.4
DDX55Q8NHQ9 NEDD4L-203ENST00000357895 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC9.94□□□□□ -0.826e-22■□□□□ 9.4
DDX55Q8NHQ9 NEDD4L-209ENST00000456986 8436 ntTSL 1 (best) BASIC9.44□□□□□ -0.96e-22■□□□□ 9.4
DDX55Q8NHQ9 NEDD4L-214ENST00000586263 3347 ntAPPRIS ALT2 TSL 1 (best) BASIC9.41□□□□□ -0.96e-22■□□□□ 9.4
DDX55Q8NHQ9 NEDD4L-229ENST00000590506 2743 ntTSL 28.21□□□□□ -1.096e-22■□□□□ 9.4
DDX55Q8NHQ9 NEDD4L-207ENST00000435432 3417 ntTSL 1 (best) BASIC7.71□□□□□ -1.186e-22■□□□□ 9.4
DDX55Q8NHQ9 EIF2AK1-202ENST00000422786 782 ntTSL 314.47□□□□□ -0.095e-12■□□□□ 9.4
DDX55Q8NHQ9 HLA-B-258ENST00000640615 240 ntBASIC10.23□□□□□ -0.771e-6■□□□□ 9.4
DDX55Q8NHQ9 RRBP1-206ENST00000455029 2485 ntTSL 1 (best) BASIC13.79□□□□□ -0.24e-13■□□□□ 9.4
DDX55Q8NHQ9 KHNYN-205ENST00000556510 911 ntTSL 227.33■■□□□ 1.974e-13■□□□□ 9.4
DDX55Q8NHQ9 LRRC75A-AS1-216ENST00000492250 565 ntTSL 55.97□□□□□ -1.453e-70■□□□□ 9.4
DDX55Q8NHQ9 FLNA-216ENST00000490936 5374 ntTSL 1 (best)17.56■□□□□ 0.42e-8■□□□□ 9.4
DDX55Q8NHQ9 FLNA-217ENST00000498411 368 ntTSL 317.53■□□□□ 0.42e-8■□□□□ 9.4
DDX55Q8NHQ9 FLNA-207ENST00000422373 8486 ntAPPRIS P3 TSL 5 BASIC16.23■□□□□ 0.192e-8■□□□□ 9.4
DDX55Q8NHQ9 FLNA-206ENST00000420627 8225 ntTSL 514.76□□□□□ -0.052e-8■□□□□ 9.4
DDX55Q8NHQ9 FLNA-203ENST00000369850 8382 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.082e-8■□□□□ 9.4
DDX55Q8NHQ9 FLNA-204ENST00000369856 8241 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.192e-8■□□□□ 9.4
DDX55Q8NHQ9 FLNA-202ENST00000360319 8281 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.252e-8■□□□□ 9.4
DDX55Q8NHQ9 FLNA-219ENST00000610817 7595 ntTSL 5 BASIC13.1□□□□□ -0.312e-8■□□□□ 9.4
DDX55Q8NHQ9 EIF1-204ENST00000469308 815 ntTSL 227.74■■■□□ 2.031e-12■□□□□ 9.4
DDX55Q8NHQ9 EIF1-207ENST00000591776 797 ntTSL 4 BASIC8.98□□□□□ -0.971e-12■□□□□ 9.4
DDX55Q8NHQ9 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC29.49■■■□□ 2.311e-9■□□□□ 9.4
DDX55Q8NHQ9 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC23.9■■□□□ 1.421e-9■□□□□ 9.4
DDX55Q8NHQ9 AC011448.1-202ENST00000586674 1071 ntTSL 222.69■■□□□ 1.221e-9■□□□□ 9.4
DDX55Q8NHQ9 NDUFA13-202ENST00000502506 1166 ntTSL 219.07■□□□□ 0.641e-9■□□□□ 9.4
DDX55Q8NHQ9 NDUFA13-207ENST00000606722 502 ntTSL 315.32■□□□□ 0.041e-9■□□□□ 9.4
DDX55Q8NHQ9 NDUFA13-204ENST00000507754 991 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.081e-9■□□□□ 9.4
DDX55Q8NHQ9 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC21.17■□□□□ 0.981e-19■□□□□ 9.4
DDX55Q8NHQ9 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.31e-19■□□□□ 9.4
DDX55Q8NHQ9 HSP90B1-203ENST00000548462 3032 ntTSL 212.35□□□□□ -0.431e-19■□□□□ 9.4
DDX55Q8NHQ9 HSP90B1-207ENST00000550595 694 ntTSL 26.43□□□□□ -1.381e-19■□□□□ 9.4
DDX55Q8NHQ9 ANP32E-210ENST00000629042 3054 ntTSL 5 BASIC13.04□□□□□ -0.322e-6■□□□□ 9.4
DDX55Q8NHQ9 ANP32E-208ENST00000583931 3451 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.72e-6■□□□□ 9.4
DDX55Q8NHQ9 ANP32E-209ENST00000616917 2989 ntTSL 2 BASIC3.5□□□□□ -1.852e-6■□□□□ 9.4
DDX55Q8NHQ9 USP7-202ENST00000381886 3587 ntTSL 1 (best) BASIC6.19□□□□□ -1.424e-12■□□□□ 9.4
DDX55Q8NHQ9 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC19.53■□□□□ 0.721e-6■□□□□ 9.3
DDX55Q8NHQ9 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC22.34■■□□□ 1.172e-10■□□□□ 9.3
DDX55Q8NHQ9 PDIA4-203ENST00000466592 632 ntTSL 217.77■□□□□ 0.442e-10■□□□□ 9.3
DDX55Q8NHQ9 MRPL33-201ENST00000296102 518 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.242e-10■□□□□ 9.3
DDX55Q8NHQ9 MRPL33-202ENST00000379666 404 ntTSL 1 (best) BASIC16.53■□□□□ 0.242e-10■□□□□ 9.3
DDX55Q8NHQ9 MRPL33-203ENST00000448427 527 ntTSL 412.65□□□□□ -0.382e-10■□□□□ 9.3
DDX55Q8NHQ9 MRPL33-206ENST00000483992 729 ntTSL 29.29□□□□□ -0.922e-10■□□□□ 9.3
DDX55Q8NHQ9 MRPL33-205ENST00000476552 587 ntTSL 27.86□□□□□ -1.152e-10■□□□□ 9.3
DDX55Q8NHQ9 ARPP19-204ENST00000563277 955 ntTSL 2 BASIC6.73□□□□□ -1.332e-10■□□□□ 9.3
DDX55Q8NHQ9 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC22.33■■□□□ 1.172e-9■□□□□ 9.3
DDX55Q8NHQ9 RPL28-205ENST00000558131 444 ntTSL 5 BASIC20.5■□□□□ 0.872e-9■□□□□ 9.3
DDX55Q8NHQ9 RPL28-209ENST00000560055 670 ntTSL 3 BASIC20.31■□□□□ 0.842e-9■□□□□ 9.3
DDX55Q8NHQ9 RPL28-211ENST00000560881 1692 ntTSL 520.05■□□□□ 0.82e-9■□□□□ 9.3
DDX55Q8NHQ9 RPL28-207ENST00000558815 616 ntTSL 2 BASIC18.74■□□□□ 0.592e-9■□□□□ 9.3
DDX55Q8NHQ9 RPL28-208ENST00000559463 852 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.52e-9■□□□□ 9.3
DDX55Q8NHQ9 RPL28-202ENST00000426763 5620 ntTSL 1 (best)14.57□□□□□ -0.082e-9■□□□□ 9.3
DDX55Q8NHQ9 RPL28-201ENST00000344063 4796 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.532e-9■□□□□ 9.3
DDX55Q8NHQ9 ZNF385A-211ENST00000550779 2099 ntTSL 520.07■□□□□ 0.82e-7■□□□□ 9.3
DDX55Q8NHQ9 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC18.95■□□□□ 0.622e-7■□□□□ 9.3
DDX55Q8NHQ9 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC18.46■□□□□ 0.552e-7■□□□□ 9.3
DDX55Q8NHQ9 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC17.91■□□□□ 0.462e-7■□□□□ 9.3
DDX55Q8NHQ9 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.32e-7■□□□□ 9.3
DDX55Q8NHQ9 ZNF385A-205ENST00000546970 2494 ntTSL 1 (best) BASIC15.8■□□□□ 0.122e-7■□□□□ 9.3
DDX55Q8NHQ9 MACROD1-204ENST00000541041 230 ntTSL 315.17■□□□□ 0.022e-7■□□□□ 9.3
DDX55Q8NHQ9 RPS29-206ENST00000557111 488 ntTSL 2 BASIC21.11■□□□□ 0.975e-13■□□□□ 9.3
DDX55Q8NHQ9 RPS29-207ENST00000557367 499 ntTSL 216.62■□□□□ 0.255e-13■□□□□ 9.3
DDX55Q8NHQ9 RPS29-201ENST00000245458 296 ntAPPRIS P1 TSL 1 (best) BASIC8.2□□□□□ -1.15e-13■□□□□ 9.3
DDX55Q8NHQ9 RPS29-202ENST00000396020 7062 ntTSL 1 (best) BASIC7.95□□□□□ -1.145e-13■□□□□ 9.3
DDX55Q8NHQ9 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.759e-20■□□□□ 9.3
DDX55Q8NHQ9 FKBP10-206ENST00000489591 2826 ntTSL 218.29■□□□□ 0.529e-20■□□□□ 9.3
DDX55Q8NHQ9 FKBP10-203ENST00000455106 1965 ntTSL 215.92■□□□□ 0.149e-20■□□□□ 9.3
DDX55Q8NHQ9 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.754e-7■□□□□ 9.3
DDX55Q8NHQ9 AL021546.1-201ENST00000551806 552 ntAPPRIS P1 TSL 3 BASIC18.43■□□□□ 0.544e-7■□□□□ 9.3
DDX55Q8NHQ9 COX6A1-202ENST00000549525 767 nt7.61□□□□□ -1.194e-7■□□□□ 9.3
DDX55Q8NHQ9 RPL31-210ENST00000441435 717 ntTSL 27.32□□□□□ -1.241e-7■□□□□ 9.3
DDX55Q8NHQ9 A2M-211ENST00000543436 600 ntTSL 514.01□□□□□ -0.172e-55■□□□□ 9.3
DDX55Q8NHQ9 A2M-206ENST00000495442 729 ntTSL 310.1□□□□□ -0.792e-55■□□□□ 9.3
DDX55Q8NHQ9 A2M-201ENST00000318602 4844 ntAPPRIS P1 TSL 1 (best) BASIC8.14□□□□□ -1.112e-55■□□□□ 9.3
DDX55Q8NHQ9 A2M-207ENST00000495709 509 ntTSL 24.64□□□□□ -1.672e-55■□□□□ 9.3
DDX55Q8NHQ9 AL121722.1-201ENST00000638550 4849 ntAPPRIS P1 TSL 5 BASIC9.68□□□□□ -0.862e-6■□□□□ 9.3
DDX55Q8NHQ9 AKAP1-209ENST00000572560 442 ntTSL 320.02■□□□□ 0.85e-8■□□□□ 9.3
DDX55Q8NHQ9 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.235e-8■□□□□ 9.3
DDX55Q8NHQ9 AKAP1-214ENST00000575032 570 ntTSL 315.61■□□□□ 0.095e-8■□□□□ 9.3
Retrieved 100 of 15,504 protein–RNA pairs in 147.3 ms