RNA–Protein interactions for RNA: ENST00000590506.1

NEDD4L-229, Transcript of neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase, human

TSL 2

Gene NEDD4L, Length 2,743 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NEDD4L-229	ENST00000590506	NISCH	Q9Y2I1	1504 aa		13.99	□□□□□ -0.17
NEDD4L-229	ENST00000590506	CHIC1	Q5VXU3	224 aa		13.49	□□□□□ -0.25
NEDD4L-229	ENST00000590506	HRC	P23327	699 aa		13.21	□□□□□ -0.29
NEDD4L-229	ENST00000590506	PELP1	Q8IZL8	1130 aa	Known RBP	13.11	□□□□□ -0.31
NEDD4L-229	ENST00000590506	PPARGC1B	Q86YN6	1023 aa	Known RBP	12.99	□□□□□ -0.33
NEDD4L-229	ENST00000590506	AEBP2	Q6ZN18	517 aa	Predicted RBP	12.91	□□□□□ -0.34
NEDD4L-229	ENST00000590506	PCGF6	Q9BYE7	350 aa		12.83	□□□□□ -0.36
NEDD4L-229	ENST00000590506	SCAF1	Q9H7N4	1312 aa	Known RBP	12.68	□□□□□ -0.38
NEDD4L-229	ENST00000590506	MYT1	Q01538	1121 aa		12.67	□□□□□ -0.38
NEDD4L-229	ENST00000590506	MYO15B	Q96JP2	1530 aa		12.6	□□□□□ -0.39
NEDD4L-229	ENST00000590506	SUPT5H	O00267	1087 aa	Known RBP	12.55	□□□□□ -0.4
NEDD4L-229	ENST00000590506	SHROOM4	Q9ULL8	1493 aa		12.51	□□□□□ -0.41
NEDD4L-229	ENST00000590506	SLC24A1	O60721	1099 aa		12.5	□□□□□ -0.41
NEDD4L-229	ENST00000590506	EHMT2	Q96KQ7	1210 aa		12.37	□□□□□ -0.43
NEDD4L-229	ENST00000590506	DCAF1	Q9Y4B6	1507 aa		12.33	□□□□□ -0.43
NEDD4L-229	ENST00000590506	TRIM26	Q12899	539 aa	Predicted RBP	12.3	□□□□□ -0.44
NEDD4L-229	ENST00000590506	ZEB1	P37275	1124 aa	Predicted RBP	12.26	□□□□□ -0.45
NEDD4L-229	ENST00000590506	ACIN1	Q9UKV3	1341 aa	Known RBP	12.26	□□□□□ -0.45
NEDD4L-229	ENST00000590506	CCDC180	Q9P1Z9	1646 aa		12.25	□□□□□ -0.45
NEDD4L-229	ENST00000590506	NEUROD1	Q13562	356 aa		12.23	□□□□□ -0.45
NEDD4L-229	ENST00000590506	PHF23	Q9BUL5	403 aa	Predicted RBP	12.22	□□□□□ -0.45
NEDD4L-229	ENST00000590506	LOC105371045	A0A1W2PR82	267 aa		12.2	□□□□□ -0.46
NEDD4L-229	ENST00000590506	GTF3C3	Q9Y5Q9	886 aa		12.2	□□□□□ -0.46
NEDD4L-229	ENST00000590506	CENPB	P07199	599 aa	Predicted RBP	12.04	□□□□□ -0.48
NEDD4L-229	ENST00000590506	TTBK1	Q5TCY1	1321 aa	Predicted RBP	11.93	□□□□□ -0.5
NEDD4L-229	ENST00000590506	BCL11A	Q9H165	835 aa		11.91	□□□□□ -0.5
NEDD4L-229	ENST00000590506	ZCCHC6	Q5VYS8	1495 aa	Known RBP	11.9	□□□□□ -0.5
NEDD4L-229	ENST00000590506	DIEXF	Q68CQ4	756 aa	Known RBP	11.9	□□□□□ -0.5
NEDD4L-229	ENST00000590506	PLPPR3	Q6T4P5	718 aa		11.87	□□□□□ -0.51
NEDD4L-229	ENST00000590506	FAM9A	Q8IZU1	332 aa	Predicted RBP	11.83	□□□□□ -0.52
NEDD4L-229	ENST00000590506	YTHDC1	Q96MU7	727 aa	Known RBP	11.8	□□□□□ -0.52
NEDD4L-229	ENST00000590506	HNRNPUL2-BSCL2	H3BQZ7	746 aa	Predicted RBP	11.8	□□□□□ -0.52
NEDD4L-229	ENST00000590506	DCAF8L2	P0C7V8	631 aa		11.77	□□□□□ -0.53
NEDD4L-229	ENST00000590506	CCER1	Q8TC90	406 aa	Predicted RBP	11.76	□□□□□ -0.53
NEDD4L-229	ENST00000590506	ANP32E	Q9BTT0	268 aa		11.71	□□□□□ -0.53
NEDD4L-229	ENST00000590506	TRIM41	Q8WV44	630 aa		11.66	□□□□□ -0.54
NEDD4L-229	ENST00000590506	RTN4	Q9NQC3	1192 aa	Known RBP	11.66	□□□□□ -0.54
NEDD4L-229	ENST00000590506	PRKCSH	P14314	528 aa	Predicted RBP	11.63	□□□□□ -0.55
NEDD4L-229	ENST00000590506	CSRNP3	Q8WYN3	585 aa		11.62	□□□□□ -0.55
NEDD4L-229	ENST00000590506	ZNF316	A6NFI3	1004 aa	Predicted RBP	11.59	□□□□□ -0.55
NEDD4L-229	ENST00000590506	MIER1	Q8N108	512 aa		11.59	□□□□□ -0.55
NEDD4L-229	ENST00000590506	KCNA4	P22459	653 aa		11.58	□□□□□ -0.56
NEDD4L-229	ENST00000590506	TSHZ2	Q9NRE2	1034 aa		11.56	□□□□□ -0.56
NEDD4L-229	ENST00000590506	SUPT16H	Q9Y5B9	1047 aa	Known RBP	11.52	□□□□□ -0.56
NEDD4L-229	ENST00000590506	CLSPN	Q9HAW4	1339 aa		11.4	□□□□□ -0.58
NEDD4L-229	ENST00000590506	ABCC9	O60706	1549 aa		11.31	□□□□□ -0.6
NEDD4L-229	ENST00000590506	ERICH6	Q7L0X2	663 aa		11.3	□□□□□ -0.6
NEDD4L-229	ENST00000590506	BCAN	Q96GW7	911 aa		11.3	□□□□□ -0.6
NEDD4L-229	ENST00000590506	RSF1	Q96T23	1441 aa	Predicted RBP	11.29	□□□□□ -0.6
NEDD4L-229	ENST00000590506	AMER1	Q5JTC6	1135 aa	Predicted RBP	11.29	□□□□□ -0.6
NEDD4L-229	ENST00000590506	RBM19	Q9Y4C8	960 aa	Known RBP	11.25	□□□□□ -0.61
NEDD4L-229	ENST00000590506	RB1CC1	Q8TDY2	1594 aa		11.24	□□□□□ -0.61
NEDD4L-229	ENST00000590506	MSH5	O43196	834 aa		11.2	□□□□□ -0.62
NEDD4L-229	ENST00000590506	FKBP8	Q14318	412 aa		11.18	□□□□□ -0.62
NEDD4L-229	ENST00000590506	APLP2	Q06481	763 aa		11.17	□□□□□ -0.62
NEDD4L-229	ENST00000590506	ANO8	Q9HCE9	1232 aa	Predicted RBP	11.16	□□□□□ -0.62
NEDD4L-229	ENST00000590506	HNRNPUL2	Q1KMD3	747 aa	Known RBP	11.16	□□□□□ -0.62
NEDD4L-229	ENST00000590506	WRN	Q14191	1432 aa	Predicted RBP eCLIP	11.15	□□□□□ -0.62
NEDD4L-229	ENST00000590506	ITGAE	P38570	1179 aa		11.12	□□□□□ -0.63
NEDD4L-229	ENST00000590506	NCBP3	Q53F19	620 aa	Known RBP	11.12	□□□□□ -0.63
NEDD4L-229	ENST00000590506	KCNH8	Q96L42	1107 aa		11.1	□□□□□ -0.63
NEDD4L-229	ENST00000590506	SCRIB	Q14160	1630 aa		11.09	□□□□□ -0.63
NEDD4L-229	ENST00000590506	DEK	P35659	375 aa	Known RBP	11.08	□□□□□ -0.64
NEDD4L-229	ENST00000590506	CEP162	Q5TB80	1403 aa		11.08	□□□□□ -0.64
NEDD4L-229	ENST00000590506	SLC4A1AP	Q9BWU0	796 aa	Known RBP	11.08	□□□□□ -0.64
NEDD4L-229	ENST00000590506	NEFL	P07196	543 aa		11.04	□□□□□ -0.64
NEDD4L-229	ENST00000590506	SALL2	Q9Y467	1007 aa	Predicted RBP	11.02	□□□□□ -0.65
NEDD4L-229	ENST00000590506	FANCI	Q9NVI1	1328 aa		11.02	□□□□□ -0.65
NEDD4L-229	ENST00000590506	ADRA2B	P18089	450 aa		11.01	□□□□□ -0.65
NEDD4L-229	ENST00000590506	MYT1L	Q9UL68	1186 aa		11	□□□□□ -0.65
NEDD4L-229	ENST00000590506	CCDC136	Q96JN2	1154 aa		10.98	□□□□□ -0.65
NEDD4L-229	ENST00000590506	CECR2	Q9BXF3	1484 aa		10.96	□□□□□ -0.65
NEDD4L-229	ENST00000590506	TNIK	Q9UKE5	1360 aa		10.95	□□□□□ -0.66
NEDD4L-229	ENST00000590506	UBTF	P17480	764 aa	Known RBP	10.94	□□□□□ -0.66
NEDD4L-229	ENST00000590506	MROH2B	Q7Z745	1585 aa		10.94	□□□□□ -0.66
NEDD4L-229	ENST00000590506	DAXX	Q9UER7	740 aa	Predicted RBP	10.93	□□□□□ -0.66
NEDD4L-229	ENST00000590506	CDK11A	Q9UQ88	783 aa	Predicted RBP	10.92	□□□□□ -0.66
NEDD4L-229	ENST00000590506	NBR1	Q14596	966 aa		10.91	□□□□□ -0.66
NEDD4L-229	ENST00000590506	WIZ	O95785	1651 aa		10.9	□□□□□ -0.66
NEDD4L-229	ENST00000590506	TRIM52	Q96A61	297 aa		10.9	□□□□□ -0.66
NEDD4L-229	ENST00000590506	CCDC88B	A6NC98	1476 aa		10.9	□□□□□ -0.66
NEDD4L-229	ENST00000590506	DHX57	Q6P158	1386 aa	Known RBP	10.9	□□□□□ -0.66
NEDD4L-229	ENST00000590506	ABCC8	Q09428	1581 aa		10.89	□□□□□ -0.67
NEDD4L-229	ENST00000590506	ERICH6B	Q5W0A0	696 aa		10.89	□□□□□ -0.67
NEDD4L-229	ENST00000590506	ZBTB4	Q9P1Z0	1013 aa	Predicted RBP	10.88	□□□□□ -0.67
NEDD4L-229	ENST00000590506	SOGA1	O94964	1423 aa		10.88	□□□□□ -0.67
NEDD4L-229	ENST00000590506	UBE2Q2	Q8WVN8	375 aa		10.86	□□□□□ -0.67
NEDD4L-229	ENST00000590506	IRX6	P78412	446 aa	Predicted RBP	10.86	□□□□□ -0.67
NEDD4L-229	ENST00000590506	EIF4G1	Q04637	1599 aa	Known RBP	10.86	□□□□□ -0.67
NEDD4L-229	ENST00000590506	IL27	Q8NEV9	243 aa		10.85	□□□□□ -0.67
NEDD4L-229	ENST00000590506	DDX10	Q13206	875 aa	Known RBP	10.85	□□□□□ -0.67
NEDD4L-229	ENST00000590506	NOP58	Q9Y2X3	529 aa	Known RBP	10.81	□□□□□ -0.68
NEDD4L-229	ENST00000590506	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	10.81	□□□□□ -0.68
NEDD4L-229	ENST00000590506	PAK3	O75914	559 aa	Predicted RBP	10.81	□□□□□ -0.68
NEDD4L-229	ENST00000590506	RUSC2	Q8N2Y8	1516 aa		10.8	□□□□□ -0.68
NEDD4L-229	ENST00000590506	EEA1	Q15075	1411 aa		10.79	□□□□□ -0.68
NEDD4L-229	ENST00000590506	GOLGA3	Q08378	1498 aa		10.79	□□□□□ -0.68
NEDD4L-229	ENST00000590506	ZBTB22	O15209	634 aa		10.78	□□□□□ -0.68
NEDD4L-229	ENST00000590506	NACAD	O15069	1562 aa		10.76	□□□□□ -0.69
NEDD4L-229	ENST00000590506	RTL5	Q5HYW3	569 aa	Predicted RBP	10.75	□□□□□ -0.69

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